[med-svn] r2576 - trunk/packages/seaview/trunk/debian

[plessy at alioth.debian.org]

Author: plessy
Date: 2008-10-20 15:08:40 +0000 (Mon, 20 Oct 2008)
New Revision: 2576

Added:
   trunk/packages/seaview/trunk/debian/references
   trunk/packages/seaview/trunk/debian/seaview.doc-base.reference
Modified:
   trunk/packages/seaview/trunk/debian/rules
Log:
Experimenting the handling of BibTex references.


Added: trunk/packages/seaview/trunk/debian/references
===================================================================
--- trunk/packages/seaview/trunk/debian/references	                        (rev 0)
+++ trunk/packages/seaview/trunk/debian/references	2008-10-20 15:08:40 UTC (rev 2576)
@@ -0,0 +1,19 @@
+
+
+ 
+
+ at article{N.Galtier12011996,
+author = {Galtier, N. and Gouy, M. and Gautier, C.},
+title = {{SEAVIEW and PHYLO_WIN: two graphic tools for sequence alignment and molecular phylogeny}},
+journal = {Comput. Appl. Biosci.},
+volume = {12},
+number = {6},
+pages = {543-548},
+doi = {10.1093/bioinformatics/12.6.543},
+year = {1996},
+abstract = {SEA VIEW and PHYLO_WIN are two graphic tools for X Windows-Unix computers dedicated to sequence alignment and molecular phylogenetics. SEA VIEW is a sequence alignment editor allowing manual or automatic alignment through an interface with CLUSTALW program. Alignment of large sequences with extensive length differences is made easier by a dot-plot-based routine. The PHYLO_WIN program allows phylogenetic tree building according to most usual methods (neighbor joining with numerous distance estimates, maximum parsimony, maximum likelihood), and a bootstrap analysis with any of them. Reconstructed trees can be drawn, edited, printed, stored, evaluated according to numerous criteria. Taxonomic species groups and sets of conserved regions can be defined by mouse and stored into sequence files, thus avoiding multiple data files. Both tools are entirely mouse driven. On-line help makes them easy to use. They are freely available by anonymous ftp at biom3.univ-lyonl. fr/pub/ mol_phylogeny or http://acnuc.univ-lyonl.fr, or by e-mail to galtier at biomserv.univ-lyonl.fr.
+},
+URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/12/6/543},
+eprint = {http://bioinformatics.oxfordjournals.org/cgi/reprint/12/6/543.pdf}
+}
+


Property changes on: trunk/packages/seaview/trunk/debian/references
___________________________________________________________________
Name: svn:mergeinfo
   + 

Modified: trunk/packages/seaview/trunk/debian/rules
===================================================================
--- trunk/packages/seaview/trunk/debian/rules	2008-10-15 21:27:45 UTC (rev 2575)
+++ trunk/packages/seaview/trunk/debian/rules	2008-10-20 15:08:40 UTC (rev 2576)
@@ -49,7 +49,7 @@
 	dh_testdir
 	dh_testroot
 	dh_installchangelogs
-	dh_installdocs
+	dh_installdocs debian/references
 	dh_installexamples debian/examples/* protein.mase
 	dh_installmenu
 	dh_desktop

Added: trunk/packages/seaview/trunk/debian/seaview.doc-base.reference
===================================================================
--- trunk/packages/seaview/trunk/debian/seaview.doc-base.reference	                        (rev 0)
+++ trunk/packages/seaview/trunk/debian/seaview.doc-base.reference	2008-10-20 15:08:40 UTC (rev 2576)
@@ -0,0 +1,6 @@
+Document: seaview-reference
+Title: Reference for SeaView
+Section: Bibliography
+
+Format: Text
+Files: /usr/share/doc/seaview/references