[med-svn] r2469 - trunk/packages/srf/trunk/debian

[plessy at alioth.debian.org]

Author: plessy
Date: 2008-09-09 07:34:44 +0000 (Tue, 09 Sep 2008)
New Revision: 2469

Added:
   trunk/packages/srf/trunk/debian/srf-doc.docs
Removed:
   trunk/packages/srf/trunk/debian/dirs
Modified:
   trunk/packages/srf/trunk/debian/control
   trunk/packages/srf/trunk/debian/rules
Log:
Control file adapted to renamed libread; debhelper and documentation tidied a little.


Modified: trunk/packages/srf/trunk/debian/control
===================================================================
--- trunk/packages/srf/trunk/debian/control	2008-09-05 01:57:05 UTC (rev 2468)
+++ trunk/packages/srf/trunk/debian/control	2008-09-09 07:34:44 UTC (rev 2469)
@@ -1,13 +1,40 @@
 Source: srf
-Section: unknown
-Priority: extra
-Maintainer: Charles Plessy <plessy at debian.org>
-Build-Depends: cdbs, quilt, debhelper (>= 7), autotools-dev, libcurl4-gnutls-dev
-Standards-Version: 3.7.3
-Homepage: <insert the upstream URL, if relevant>
+Section: science
+Priority: optional
+Maintainer: Debian-Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+DM-Upload-Allowed: yes
+Uploaders: Charles Plessy <plessy at debian.org>
+Build-Depends: cdbs, quilt, debhelper (>= 7), autotools-dev, libcurl4-gnutls-dev, libstaden-read-dev
+Standards-Version: 3.8.0
+Homepage: http://srf.sourceforge.net/
+Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/srf/trunk/?rev=0&sc=0
+Vcs-Svn: svn://svn.debian.org/svn/debian-med/trunk/packages/srf/trunk/
 
 Package: srf
 Architecture: any
 Depends: ${shlibs:Depends}, ${misc:Depends}
 Description: <insert up to 60 chars description>
  <insert long description, indented with spaces>
+
+Package: srf-doc
+Architecture: all
+Depends: ${misc:Depends}
+Description: specification documents for the SRF format DNA sequence data
+ SRF (sort for Sequence Read Format) is a generic format capable of storing
+ data generated by any DNA sequencing technology. Hence it has sufficient
+ flexibility to store data from current and future DNA sequencing technologies
+ at minimal cost of implementation. Benefits include a single input file format
+ for all downstream applications and a read lookup index enabling downstream
+ formats to reference reads without duplication of all of the read specific
+ information. 
+ .
+ This package contains the version 1.3 and the draft of the version
+ 1.3.1 of the SRF specification.
+
+Package: libsrf1
+Architecture: any
+Depends: ${shlibs:Depends}, ${misc:Depends}
+Description: C++ implementation of the SRF format for DNA sequence data
+ SRF (sort for Sequence Read Format) is a generic format capable of storing
+ data generated by any DNA sequencing technology. This library is an
+ implementation of SRF and provides basic input-output functions.

Deleted: trunk/packages/srf/trunk/debian/dirs
===================================================================
--- trunk/packages/srf/trunk/debian/dirs	2008-09-05 01:57:05 UTC (rev 2468)
+++ trunk/packages/srf/trunk/debian/dirs	2008-09-09 07:34:44 UTC (rev 2469)
@@ -1,2 +0,0 @@
-usr/bin
-usr/sbin

Modified: trunk/packages/srf/trunk/debian/rules
===================================================================
--- trunk/packages/srf/trunk/debian/rules	2008-09-05 01:57:05 UTC (rev 2468)
+++ trunk/packages/srf/trunk/debian/rules	2008-09-09 07:34:44 UTC (rev 2469)
@@ -4,6 +4,6 @@
 include /usr/share/cdbs/1/rules/debhelper.mk
 include /usr/share/cdbs/1/class/autotools.mk
 
-CXXFLAGS += -I/usr/include/io_lib
+#CXXFLAGS += -I/usr/include/io_lib
 
 # Add here any variable or target overrides you need.

Added: trunk/packages/srf/trunk/debian/srf-doc.docs
===================================================================
--- trunk/packages/srf/trunk/debian/srf-doc.docs	                        (rev 0)
+++ trunk/packages/srf/trunk/debian/srf-doc.docs	2008-09-09 07:34:44 UTC (rev 2469)
@@ -0,0 +1,4 @@
+docs/SequenceReadFormat_v_1_3_1_Feb_27th_08.pdf
+docs/ShortSequenceFormatDec18th_v_1_3.doc
+docs/ShortSequenceFormatDec18th_v_1_3.pdf
+docs/ShortSequenceFormatFeb11th_v1_approved.doc