[med-svn] r2471 - in trunk/packages: . agdbnet agdbnet/trunk agdbnet/trunk/debian agdbnet/trunk/debian/patches
tille at alioth.debian.org
tille at alioth.debian.org
Wed Sep 10 12:18:50 UTC 2008
Author: tille
Date: 2008-09-10 12:18:49 +0000 (Wed, 10 Sep 2008)
New Revision: 2471
Added:
trunk/packages/agdbnet/
trunk/packages/agdbnet/trunk/
trunk/packages/agdbnet/trunk/debian/
trunk/packages/agdbnet/trunk/debian/changelog
trunk/packages/agdbnet/trunk/debian/compat
trunk/packages/agdbnet/trunk/debian/control
trunk/packages/agdbnet/trunk/debian/copyright
trunk/packages/agdbnet/trunk/debian/install
trunk/packages/agdbnet/trunk/debian/patches/
trunk/packages/agdbnet/trunk/debian/patches/10_conf_location.patch
trunk/packages/agdbnet/trunk/debian/patches/series
Log:
Inject first non-templated packaging stuff for agdbnet
Added: trunk/packages/agdbnet/trunk/debian/changelog
===================================================================
--- trunk/packages/agdbnet/trunk/debian/changelog (rev 0)
+++ trunk/packages/agdbnet/trunk/debian/changelog 2008-09-10 12:18:49 UTC (rev 2471)
@@ -0,0 +1,5 @@
+agdbnet (1.0.0-1) unstable; urgency=low
+
+ * Initial release (Closes: #nnnn)
+
+ -- Andreas Tille <tille at debian.org> Fri, 05 Sep 2008 11:07:50 +0200
Added: trunk/packages/agdbnet/trunk/debian/compat
===================================================================
--- trunk/packages/agdbnet/trunk/debian/compat (rev 0)
+++ trunk/packages/agdbnet/trunk/debian/compat 2008-09-10 12:18:49 UTC (rev 2471)
@@ -0,0 +1 @@
+7
Added: trunk/packages/agdbnet/trunk/debian/control
===================================================================
--- trunk/packages/agdbnet/trunk/debian/control (rev 0)
+++ trunk/packages/agdbnet/trunk/debian/control 2008-09-10 12:18:49 UTC (rev 2471)
@@ -0,0 +1,30 @@
+Source: agdbnet
+Section: unknown
+Priority: optional
+Maintainer: Debian-Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+DM-Upload-Allowed: Yes
+Uploaders: Andreas Tille <tille at debian.org>
+Build-Depends: debhelper (>= 7), quilt
+Standards-Version: 3.8.0
+Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/agdbnet/trunk/?rev=0&sc=0
+Vcs-Svn: svn://svn.debian.org/svn/debian-med/trunk/packages/agdbnet/trunk/
+Homepage: http://pubmlst.org/software/database/agdbnet/
+
+Package: agdbnet
+Architecture: any
+Depends: ${shlibs:Depends}, ${misc:Depends}, emboss-lib, blast2
+Description: antigen sequence database software for web-based bacterial typing
+ AgdbNet facilitates simultaneous BLAST querying of multiple loci using
+ either nucleotide or peptide sequences. Databases are described by XML
+ files and can have any number of loci, which may be defined by nucleotide
+ and/or peptide sequences. The databases can optionally have integral
+ isolate tables so that information about representative isolates can
+ be retrieved or they may be configured to query external isolate databases,
+ such as those hosted on PubMLST.org.
+ .
+ The software is used on a number of public bacterial typing databases:
+ * Neisseria PorA variable regions (http://neisseria.org/nm/typing/pora/),
+ PorB (http://neisseria.org/nm/typing/porb/),
+ FetA (http://neisseria.org/nm/typing/feta/)
+ * Campylobacter flaA (http://hercules.medawar.ox.ac.uk/flaA/)
+ * Streptococcus equi seM (http://pubmlst.org/szooepidemicus/seM/)
Added: trunk/packages/agdbnet/trunk/debian/copyright
===================================================================
--- trunk/packages/agdbnet/trunk/debian/copyright (rev 0)
+++ trunk/packages/agdbnet/trunk/debian/copyright 2008-09-10 12:18:49 UTC (rev 2471)
@@ -0,0 +1,28 @@
+X-Format-Specification: http://wiki.debian.org/Proposals/CopyrightFormat
+X-Debianized-By: Andreas Tille <tille at debian.org>
+X-Debinized-Date: Fri, 05 Sep 2008 11:07:50 +0200
+X-Source-Downloaded-From: http://pubmlst.org/software/database/agdbnet/installation.shtml
+X-Upstream-Author: 2004-2006 Keith Jolley <keith.jolley at medawar.ox.ac.uk>
+
+Files: debian/*
+Copyright: 2008 Andreas Tille <tille at debian.org> on
+License: Same as agdbnet itself
+
+Files: *
+Copyright: (C) 2004-2006 Keith Jolley, University of Oxford
+ This program is free software; you can redistribute it and/or modify
+ it under the terms of the GNU General Public License as published by
+ the Free Software Foundation; either version 2 of the License, or
+ (at your option) any later version.
+ .
+ This program is distributed in the hope that it will be useful,
+ but WITHOUT ANY WARRANTY; without even the implied warranty of
+ MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ GNU General Public License for more details.
+ .
+ You should have received a copy of the GNU General Public License along
+ with this program; if not, write to the Free Software Foundation, Inc.,
+ 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
+X-Comment: On Debian systems, the complete text of the GNU General Public
+ License can be found in `/usr/share/common-licenses/GPL'.
+
Added: trunk/packages/agdbnet/trunk/debian/install
===================================================================
--- trunk/packages/agdbnet/trunk/debian/install (rev 0)
+++ trunk/packages/agdbnet/trunk/debian/install 2008-09-10 12:18:49 UTC (rev 2471)
@@ -0,0 +1 @@
+cgi-bin/agdbnet.pl usr/lib/cgi-bin
Added: trunk/packages/agdbnet/trunk/debian/patches/10_conf_location.patch
===================================================================
--- trunk/packages/agdbnet/trunk/debian/patches/10_conf_location.patch (rev 0)
+++ trunk/packages/agdbnet/trunk/debian/patches/10_conf_location.patch 2008-09-10 12:18:49 UTC (rev 2471)
@@ -0,0 +1,11 @@
+--- agdbnet_v1.0.0.orig/cgi-bin/agdbnet.pl.orig
++++ agdbnet_v1.0.0/cgi-bin/agdbnet.pl
+@@ -35,7 +35,7 @@
+ ######################################################
+
+ ###########Local configuration########################
+-local ( our $configfile = '/usr/local/agdbnet/agdbnet.conf' );
++local ( our $configfile = '/etc/agdbnet/agdbnet.conf' );
+ #######End Local configuration########################
+
+ local (
Added: trunk/packages/agdbnet/trunk/debian/patches/series
===================================================================
--- trunk/packages/agdbnet/trunk/debian/patches/series (rev 0)
+++ trunk/packages/agdbnet/trunk/debian/patches/series 2008-09-10 12:18:49 UTC (rev 2471)
@@ -0,0 +1 @@
+10_conf_location.dpatch
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