[med-svn] r2482 - in trunk/packages/agdbnet/trunk/debian: . patches

[tille at alioth.debian.org]

Author: tille
Date: 2008-09-11 12:17:16 +0000 (Thu, 11 Sep 2008)
New Revision: 2482

Added:
   trunk/packages/agdbnet/trunk/debian/README.Debian
   trunk/packages/agdbnet/trunk/debian/docs
   trunk/packages/agdbnet/trunk/debian/examples
Modified:
   trunk/packages/agdbnet/trunk/debian/control
   trunk/packages/agdbnet/trunk/debian/dirs
   trunk/packages/agdbnet/trunk/debian/install
   trunk/packages/agdbnet/trunk/debian/patches/series
   trunk/packages/agdbnet/trunk/debian/postinst
Log:
More patches to fit installation on Debian system


Added: trunk/packages/agdbnet/trunk/debian/README.Debian
===================================================================
--- trunk/packages/agdbnet/trunk/debian/README.Debian	                        (rev 0)
+++ trunk/packages/agdbnet/trunk/debian/README.Debian	2008-09-11 12:17:16 UTC (rev 2482)
@@ -0,0 +1,8 @@
+agdbnet for Debian
+------------------
+
+This Debian package tries to prepare your server as good as possible
+enable you to do the final steps to run agdbnet.  Here are the last
+steps from installation manual that have to be done.
+
+ -- Andreas Tille <tille at debian.org>  Fri, 05 Sep 2008 11:07:50 +0200

Modified: trunk/packages/agdbnet/trunk/debian/control
===================================================================
--- trunk/packages/agdbnet/trunk/debian/control	2008-09-11 09:00:26 UTC (rev 2481)
+++ trunk/packages/agdbnet/trunk/debian/control	2008-09-11 12:17:16 UTC (rev 2482)
@@ -2,7 +2,7 @@
 Section: science
 Priority: optional
 Maintainer: Debian-Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-DM-Upload-Allowed: Yes
+DM-Upload-Allowed: yes
 Uploaders: Andreas Tille <tille at debian.org>
 Build-Depends: debhelper (>= 7), quilt, cdbs
 Standards-Version: 3.8.0
@@ -12,7 +12,8 @@
 
 Package: agdbnet
 Architecture: any
-Depends: ${shlibs:Depends}, ${misc:Depends}, emboss-lib, blast2
+Depends: ${shlibs:Depends}, ${misc:Depends}, emboss-lib, blast2, postgresql-8.3,
+ libcgi-pm-perl, libdbd-pg-perl, libxml-perl
 Description: antigen sequence database software for web-based bacterial typing
  AgdbNet facilitates simultaneous BLAST querying of multiple loci using
  either nucleotide or peptide sequences.  Databases are described by XML

Modified: trunk/packages/agdbnet/trunk/debian/dirs
===================================================================
--- trunk/packages/agdbnet/trunk/debian/dirs	2008-09-11 09:00:26 UTC (rev 2481)
+++ trunk/packages/agdbnet/trunk/debian/dirs	2008-09-11 12:17:16 UTC (rev 2482)
@@ -1 +1 @@
-/etc/agdbnet
+/etc

Added: trunk/packages/agdbnet/trunk/debian/docs
===================================================================
--- trunk/packages/agdbnet/trunk/debian/docs	                        (rev 0)
+++ trunk/packages/agdbnet/trunk/debian/docs	2008-09-11 12:17:16 UTC (rev 2482)
@@ -0,0 +1 @@
+installation.html

Added: trunk/packages/agdbnet/trunk/debian/examples
===================================================================
--- trunk/packages/agdbnet/trunk/debian/examples	                        (rev 0)
+++ trunk/packages/agdbnet/trunk/debian/examples	2008-09-11 12:17:16 UTC (rev 2482)
@@ -0,0 +1 @@
+examples/*

Modified: trunk/packages/agdbnet/trunk/debian/install
===================================================================
--- trunk/packages/agdbnet/trunk/debian/install	2008-09-11 09:00:26 UTC (rev 2481)
+++ trunk/packages/agdbnet/trunk/debian/install	2008-09-11 12:17:16 UTC (rev 2482)
@@ -1 +1 @@
-cgi-bin/agdbnet.pl usr/lib/cgi-bin
+cgi-bin usr/lib

Modified: trunk/packages/agdbnet/trunk/debian/patches/series
===================================================================
--- trunk/packages/agdbnet/trunk/debian/patches/series	2008-09-11 09:00:26 UTC (rev 2481)
+++ trunk/packages/agdbnet/trunk/debian/patches/series	2008-09-11 12:17:16 UTC (rev 2482)
@@ -1 +1,3 @@
-10_conf_location.dpatch
+10_conf_location.patch
+10_bioperl.patch
+10_preconf.patch

Modified: trunk/packages/agdbnet/trunk/debian/postinst
===================================================================
--- trunk/packages/agdbnet/trunk/debian/postinst	2008-09-11 09:00:26 UTC (rev 2481)
+++ trunk/packages/agdbnet/trunk/debian/postinst	2008-09-11 12:17:16 UTC (rev 2482)
@@ -22,7 +22,8 @@
 case "$1" in
     configure)
 	[ -d ${TMPDIR} ] || mkdir -p ${TMPDIR}
-	chmod +w www-data ${TMPDIR}
+	chgrp www-data ${TMPDIR}
+	chmod g+w ${TMPDIR}
     ;;
 
     abort-upgrade|abort-remove|abort-deconfigure)