[med-svn] r2553 - trunk/packages/agdbnet/trunk/debian/patches

[tille at alioth.debian.org]

Author: tille
Date: 2008-09-29 11:42:14 +0000 (Mon, 29 Sep 2008)
New Revision: 2553

Removed:
   trunk/packages/agdbnet/trunk/debian/patches/10_bioperl.patch
Modified:
   trunk/packages/agdbnet/trunk/debian/patches/series
Log:
This patch is not needed.  Upstream said: The 'use Bio::AlignIO' is called from within an eval in the readconfigfile subroutine.


Deleted: trunk/packages/agdbnet/trunk/debian/patches/10_bioperl.patch
===================================================================
--- trunk/packages/agdbnet/trunk/debian/patches/10_bioperl.patch	2008-09-29 08:19:04 UTC (rev 2552)
+++ trunk/packages/agdbnet/trunk/debian/patches/10_bioperl.patch	2008-09-29 11:42:14 UTC (rev 2553)
@@ -1,12 +0,0 @@
-The Debian package depends from bioperl - so we can be sure that this
-feature is available and enable it inside the cgi script.
---- agdbnet_v1.0.0.orig/cgi-bin/agdbnet.pl
-+++ agdbnet_v1.0.0/cgi-bin/agdbnet.pl
-@@ -31,6 +31,7 @@
- ###########Optional modules###########################
- #Bio::AlignIO used for generating sequences in different formats.
- #   if not installed ensure that 'bioperl=0' is set in agdbnet.conf
-+use Bio::AlignIO;
- #
- ######################################################
- 

Modified: trunk/packages/agdbnet/trunk/debian/patches/series
===================================================================
--- trunk/packages/agdbnet/trunk/debian/patches/series	2008-09-29 08:19:04 UTC (rev 2552)
+++ trunk/packages/agdbnet/trunk/debian/patches/series	2008-09-29 11:42:14 UTC (rev 2553)
@@ -1,5 +1,4 @@
 10_config_location.patch
-10_bioperl.patch
 10_preconf.patch
 11_moreinfo.patch
 12_apache_is_web-data.patch