[med-svn] r3274 - trunk/packages/last-align/trunk/debian

[Charles Plessy]

Author: plessy
Date: 2009-04-08 11:19:24 +0000 (Wed, 08 Apr 2009)
New Revision: 3274

Modified:
   trunk/packages/last-align/trunk/debian/changelog
   trunk/packages/last-align/trunk/debian/control
   trunk/packages/last-align/trunk/debian/copyright
   trunk/packages/last-align/trunk/debian/last-align.doc-base.last-align-scripts
Log:
New upstream relase.

 * New upstream release.
   - maf-join.py: joins pairwise alignments into multiple alignments.
   - Changed lastal default gap existence cost for DNA to 7.
   - Changed lastal default gapped score threshold for DNA to 40.
   - maf-swap.py: Added -n option to move any sequence to the top.
   - Allow suffixes K(ibibyte), M(ebibyte), and G(ibibyte) for sizes.
   - Plus other bugfixes and improvements, please refer Upstream's changelog.
 * Incremented Standards-Version in debian/control to reflect conformance
   with Policy 3.8.1 (no changes needed).
 * Simplified machine-readable debian/copyright file.
 * last-align.doc-base.last-align-scripts: last-scripts.txt is now compressed. 


Modified: trunk/packages/last-align/trunk/debian/changelog
===================================================================
--- trunk/packages/last-align/trunk/debian/changelog	2009-04-08 11:18:21 UTC (rev 3273)
+++ trunk/packages/last-align/trunk/debian/changelog	2009-04-08 11:19:24 UTC (rev 3274)
@@ -1,3 +1,19 @@
+last-align (48-1) unstable; urgency=low
+
+  * New upstream release.
+    - maf-join.py: joins pairwise alignments into multiple alignments.
+    - Changed lastal default gap existence cost for DNA to 7.
+    - Changed lastal default gapped score threshold for DNA to 40.
+    - maf-swap.py: Added -n option to move any sequence to the top.
+    - Allow suffixes K(ibibyte), M(ebibyte), and G(ibibyte) for sizes.
+    - Plus other bugfixes and improvements, please refer Upstream's changelog.
+  * Incremented Standards-Version in debian/control to reflect conformance
+    with Policy 3.8.1 (no changes needed).
+  * Simplified machine-readable debian/copyright file.
+  * last-align.doc-base.last-align-scripts: last-scripts.txt is now compressed. 
+
+ -- Charles Plessy <plessy at debian.org>  Wed, 08 Apr 2009 19:31:28 +0900
+
 last-align (42-1) unstable; urgency=low
 
   * New upstream release:

Modified: trunk/packages/last-align/trunk/debian/control
===================================================================
--- trunk/packages/last-align/trunk/debian/control	2009-04-08 11:18:21 UTC (rev 3273)
+++ trunk/packages/last-align/trunk/debian/control	2009-04-08 11:19:24 UTC (rev 3274)
@@ -5,7 +5,7 @@
 DM-Upload-Allowed: yes
 Uploaders: Charles Plessy <plessy at debian.org>
 Build-Depends: debhelper (>= 7), cdbs
-Standards-Version: 3.8.0
+Standards-Version: 3.8.1
 Homepage: http://last.cbrc.jp/
 Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/last-align/trunk/?rev=0&sc=0
 Vcs-Svn: svn://svn.debian.org/svn/debian-med/trunk/packages/last-align/trunk/

Modified: trunk/packages/last-align/trunk/debian/copyright
===================================================================
--- trunk/packages/last-align/trunk/debian/copyright	2009-04-08 11:18:21 UTC (rev 3273)
+++ trunk/packages/last-align/trunk/debian/copyright	2009-04-08 11:19:24 UTC (rev 3274)
@@ -1,8 +1,8 @@
 Format-Specification: http://wiki.debian.org/Proposals/CopyrightFormat
-Upstream-Author: Martin C. Frith, Michiaki Hamada and Paul B. Horton <last at cbrc.jp>
-Upstream-Source: http://last.cbrc.jp/archive/last-42.zip
+Name: LAST
+Maintainer: Martin C. Frith, Michiaki Hamada and Paul B. Horton <last at cbrc.jp>
+Source: http://last.cbrc.jp/archive/last-48.zip
 
-Files: *
 Copyright: © 2008–2009 Martin C. Frith, Michiaki Hamada and Paul B. Horton <last at cbrc.jp>
 License: GPL-3+
  This program is free software: you can redistribute it and/or modify
@@ -17,17 +17,17 @@
  .
  You should have received a copy of the GNU General Public License
  along with this program.  If not, see <http://www.gnu.org/licenses/>.
-X-Comment: On Debian systems the full text of the GNU General Public License
+Comment: On Debian systems the full text of the GNU General Public License
  can be found in the `/usr/share/common-licenses/GPL-3' file.
 
 Files: CA_code/*
 Copyright: not copyrighted
-X-Comment: Public domain code from Yi-Kuo Yu & Stephen Altschul, NCBI 
+Comment: Public domain code from Yi-Kuo Yu & Stephen Altschul, NCBI 
 
 Files: CA_code/lambda_calculator.c
 Copyright: © 2008 Michiaki Hamada
 License: GPL-3+
-X-Comment: Adapted from public domain code by Yi-Kuo Yu, NCBI
+Comment: Adapted from public domain code by Yi-Kuo Yu, NCBI
 
 Files: CA_code/lambda_calculator.h
 Copyright: © 2008 Michiaki Hamada

Modified: trunk/packages/last-align/trunk/debian/last-align.doc-base.last-align-scripts
===================================================================
--- trunk/packages/last-align/trunk/debian/last-align.doc-base.last-align-scripts	2009-04-08 11:18:21 UTC (rev 3273)
+++ trunk/packages/last-align/trunk/debian/last-align.doc-base.last-align-scripts	2009-04-08 11:19:24 UTC (rev 3274)
@@ -6,4 +6,4 @@
 Section: Science/Biology
 
 Format: text
-Files: /usr/share/doc/last-align/last-scripts.txt
+Files: /usr/share/doc/last-align/last-scripts.txt.gz