[med-svn] r3735 - trunk/packages/samtools/trunk/debian

Thu Aug 6 04:47:25 UTC 2009

Author: plessy
Date: 2009-08-06 04:47:25 +0000 (Thu, 06 Aug 2009)
New Revision: 3735

Modified:
   trunk/packages/samtools/trunk/debian/copyright
Log:
Copyright clarified upstream, but MD5 implementation has an evil advertisement clause?\226?\128?\166


Modified: trunk/packages/samtools/trunk/debian/copyright
===================================================================

--- trunk/packages/samtools/trunk/debian/copyright	2009-08-05 11:14:07 UTC (rev 3734)
+++ trunk/packages/samtools/trunk/debian/copyright	2009-08-06 04:47:25 UTC (rev 3735)
@@ -1,32 +1,85 @@
 Machine-readable license summary, see ‘http://dep.debian.net/deps/dep5/’.
 
-Name    :  
-Contact :  
-Source  :  http://downloads.sourceforge.net/sourceforge/samtools/samtools-0.1.5c.tar.bz2
+Name      :  SAMtools
+Contact   :  SAMtools mailing list <samtools-help at lists.sourceforge.net>
+Source    :  http://downloads.sourceforge.net/sourceforge/samtools/samtools-0.1.5c.tar.bz2
 
+Copyright :  © 2008–2009, Genome Research Ltd.
+License   :  MIT
 
+	Permission is hereby granted, free of charge, to any person obtaining a copy
+	of this software and associated documentation files (the "Software"), to deal
+	in the Software without restriction, including without limitation the rights
+	to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
+	copies of the Software, and to permit persons to whom the Software is
+	furnished to do so, subject to the following conditions:
+	
+	The above copyright notice and this permission notice shall be included in
+	all copies or substantial portions of the Software.
+	
+	THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+	IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
+	FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
+	AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
+	LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
+	OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN
+	THE SOFTWARE.
 
-./bgzf.c: * Broad Institute/Massachusetts Institute of Technology. All rights are reserved.
-./bgzip.c: * Broad Institute/Massachusetts Institute of Technology. All rights are reserved.
+Files     :  bgzf.*, bgzip.c
+Copyright :  © 2008 Broad Institute / Massachusetts Institute of Technology
+License   :  MIT
 
-Do not upload before sorting this out.
+The license of the above files have been confirmed upstream and their headers
+will be corrected in the next release. See:
+http://samtools.svn.sourceforge.net/viewvc/samtools?view=rev&revision=441
 
-Files: *
-Copyright: © 2008–2009, Genome Research Ltd.
-License: MIT
- Permission is hereby granted, free of charge, to any person obtaining a copy
- of this software and associated documentation files (the "Software"), to deal
- in the Software without restriction, including without limitation the rights
- to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
- copies of the Software, and to permit persons to whom the Software is
- furnished to do so, subject to the following conditions:
- .
- The above copyright notice and this permission notice shall be included in
- all copies or substantial portions of the Software.
- .
- THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
- IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
- FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
- AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
- LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
- OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN
+
+Files     :  razf.*
+Name      :  RAZF : Random Access compressed(Z) File
+Copyright :  2008, Jue Ruan <ruanjue at gmail.com>, Heng Li <lh3 at sanger.ac.uk>
+License   :  Similar to NetBSD license.
+	
+	Redistribution and use in source and binary forms, with or without
+	modification, are permitted provided that the following conditions
+	are met:
+	1. Redistributions of source code must retain the above copyright
+	   notice, this list of conditions and the following disclaimer.
+	2. Redistributions in binary form must reproduce the above copyright
+	   notice, this list of conditions and the following disclaimer in the
+	   documentation and/or other materials provided with the distribution.
+	
+	THIS SOFTWARE IS PROVIDED BY THE AUTHOR AND CONTRIBUTORS ``AS IS'' AND
+	ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
+	IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
+	ARE DISCLAIMED.  IN NO EVENT SHALL THE AUTHOR OR CONTRIBUTORS BE LIABLE
+	FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL
+	DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS
+	OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION)
+	HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT
+	LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY
+	OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF
+	SUCH DAMAGE.
+
+
+Files     :  misc/md5.*
+Name      :  MD5 Message Digest Algorithm
+Copyright :  © 1990, RSA Data Security, Inc.
+License   :
+	
+	License to copy and use this software is granted provided that   
+	it is identified as the "RSA Data Security, Inc. MD5 Message     
+	Digest Algorithm" in all material mentioning or referencing this 
+	software or this function.                                       
+	                                                                 
+	License is also granted to make and use derivative works         
+	provided that such works are identified as "derived from the RSA 
+	Data Security, Inc. MD5 Message Digest Algorithm" in all         
+	material mentioning or referencing the derived work.             
+	                                                                 
+	RSA Data Security, Inc. makes no representations concerning      
+	either the merchantability of this software or the suitability   
+	of this software for any particular purpose.  It is provided "as 
+	is" without express or implied warranty of any kind.             
+	                                                                 
+	These notices must be retained in any copies of any part of this 
+	documentation and/or software.                                   


