[med-svn] r3763 - trunk/packages/python-biopython/trunk/debian

Tue Aug 11 19:51:12 UTC 2009

Author: philipp
Date: 2009-08-11 19:51:12 +0000 (Tue, 11 Aug 2009)
New Revision: 3763

Removed:
   trunk/packages/python-biopython/trunk/debian/python-biopython-martel.files
Modified:
   trunk/packages/python-biopython/trunk/debian/README.Debian
   trunk/packages/python-biopython/trunk/debian/changelog
   trunk/packages/python-biopython/trunk/debian/control
   trunk/packages/python-biopython/trunk/debian/copyright
   trunk/packages/python-biopython/trunk/debian/rules
Log:
dropped biopython-martel

Modified: trunk/packages/python-biopython/trunk/debian/README.Debian
===================================================================

--- trunk/packages/python-biopython/trunk/debian/README.Debian	2009-08-11 12:06:57 UTC (rev 3762)
+++ trunk/packages/python-biopython/trunk/debian/README.Debian	2009-08-11 19:51:12 UTC (rev 3763)
@@ -5,4 +5,4 @@
 should install `python-biopython-doc', which provides additional
 documentation and example scripts.
 
- -- Philipp Benner <pbenner at uni-osnabrueck.de>, Mon, 14 Jan 2008 18:40:26 +0100
+ -- Philipp Benner <philipp at debian.org>, Tue, 11 Aug 2009 19:50:03 +0000

Modified: trunk/packages/python-biopython/trunk/debian/changelog
===================================================================
--- trunk/packages/python-biopython/trunk/debian/changelog	2009-08-11 12:06:57 UTC (rev 3762)
+++ trunk/packages/python-biopython/trunk/debian/changelog	2009-08-11 19:51:12 UTC (rev 3763)
@@ -1,3 +1,11 @@
+python-biopython (1.51b-2) unstable; urgency=low
+
+  * Dropped python-biopython-martel.
+  * Dropped dependency on python-egenix-mxtexttools.
+  * Removed DM-Upload-Allowed: yes.
+
+ -- Philipp Benner <philipp at debian.org>  Tue, 11 Aug 2009 19:47:52 +0000
+
 python-biopython (1.51b-1) unstable; urgency=low
 
   * New upstream release

Modified: trunk/packages/python-biopython/trunk/debian/control
===================================================================
--- trunk/packages/python-biopython/trunk/debian/control	2009-08-11 12:06:57 UTC (rev 3762)
+++ trunk/packages/python-biopython/trunk/debian/control	2009-08-11 19:51:12 UTC (rev 3763)
@@ -2,13 +2,10 @@
 Priority: optional
 Section: python
 Maintainer: Debian-Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-Uploaders: Philipp Benner <pbenner at uni-osnabrueck.de>,
+Uploaders: Philipp Benner <philipp at debian.org>,
            Charles Plessy <plessy at debian.org>
-DM-Upload-Allowed: yes
 Build-Depends: debhelper (>= 7), quilt, python-all-dev, flex, python-support,
- python-reportlab, python-numpy,
-# Should be removed when the deprecated Martel and Bio.Mindy are removed from upstream source.:
- python-egenix-mxtexttools,
+ python-reportlab, python-numpy
 # For the purpose of the tests
  python-mysqldb, wise
 XS-Python-Version: >= 2.3
@@ -19,10 +16,7 @@
 
 Package: python-biopython
 Architecture: any
-Depends: ${python:Depends}, ${shlibs:Depends}, python-numpy,
- python-biopython-martel (= ${source:Version}), python-reportlab,
-# Should be removed when the deprecated Martel and Bio.Mindy are removed from upstream source.:
- python-egenix-mxtexttools
+Depends: ${python:Depends}, ${shlibs:Depends}, python-numpy, python-reportlab
 Provides: ${python:Provides}
 Replaces: python2.3-biopython (<< 1.42-1), python2.4-biopython (<< 1.42-1)
 Conflicts: python2.3-biopython (<< 1.42-1), python2.4-biopython (<< 1.42-1)
@@ -63,21 +57,3 @@
  This is the Biopython interface to a BioSQL database (see www.biosql.org
  for details). BioPerl, BioJava and BioRuby also provide their own BioSQL
  interfaces onto the same shared SQL schema.
-
-Package: python-biopython-martel
-Architecture: all
-Priority: extra
-Depends: ${python:Depends}, python-biopython
-Provides: ${python:Provides}
-Replaces: python2.3-biopython-martel (<< 1.42-1), python2.4-biopython-martel (<< 1.42-1)
-Conflicts: python2.3-biopython-martel (<< 1.42-1), python2.4-biopython-martel (<< 1.42-1)
-XB-Python-Version: ${python:Versions}
-Description: Flat file parser for the Biopython library
- Martel uses regular expression format definition to generate
- a parser for flat- and semi-structured files.
- The parse tree information is passed back to the caller using
- XML SAX events. In other words, Martel lets you parse flat
- files as if they are in XML.
- .
- Biopython's old parsing infrastructure, Martel (this package) and Bio.Mindy,
- were deprecated in release 1.49.

Modified: trunk/packages/python-biopython/trunk/debian/copyright
===================================================================
--- trunk/packages/python-biopython/trunk/debian/copyright	2009-08-11 12:06:57 UTC (rev 3762)
+++ trunk/packages/python-biopython/trunk/debian/copyright	2009-08-11 19:51:12 UTC (rev 3763)
@@ -25,7 +25,7 @@
 
 Files: debian/*
 Copyright: © 2009      Charles Plessy <plessy at debian.org>
-             2004-2008 Philipp Benner <pbenner at uni-osnabrueck.de>
+             2004-2009 Philipp Benner <philipp at debian.org>
 License: GPL-2+
  The Debian packaging information is under the GPL, version 2 or later.
 

Deleted: trunk/packages/python-biopython/trunk/debian/python-biopython-martel.files
===================================================================
--- trunk/packages/python-biopython/trunk/debian/python-biopython-martel.files	2009-08-11 12:06:57 UTC (rev 3762)
+++ trunk/packages/python-biopython/trunk/debian/python-biopython-martel.files	2009-08-11 19:51:12 UTC (rev 3763)
@@ -1 +0,0 @@
-usr/lib/python*/site-packages/Martel

Modified: trunk/packages/python-biopython/trunk/debian/rules
===================================================================
--- trunk/packages/python-biopython/trunk/debian/rules	2009-08-11 12:06:57 UTC (rev 3762)
+++ trunk/packages/python-biopython/trunk/debian/rules	2009-08-11 19:51:12 UTC (rev 3763)
@@ -33,7 +33,6 @@
 
 	dh_movefiles -ppython-biopython		\
 		     -ppython-biopython-sql	\
-		     -ppython-biopython-martel	\
 		     --sourcedir=debian/python$*-tmp
 
 clean: unpatch $(PYVERS:%=clean-%)
@@ -45,7 +44,6 @@
 	$(RM) build-stamp
 
 # fix bugs in setup.py
-	$(RM) Martel/*.pyc
 	$(RM) Tests/*.pyc
 	$(RM) Tests/Graphics/*.eps
 	$(RM) Tests/Graphics/*.pdf


