[med-svn] r3781 - in trunk/packages: . acedb acedb/trunk acedb/trunk/debian
Steffen Möller
smoe-guest at alioth.debian.org
Mon Aug 17 16:43:23 UTC 2009
Author: smoe-guest
Date: 2009-08-17 16:43:23 +0000 (Mon, 17 Aug 2009)
New Revision: 3781
Added:
trunk/packages/acedb/
trunk/packages/acedb/trunk/
trunk/packages/acedb/trunk/debian/
trunk/packages/acedb/trunk/debian/README.Debian
trunk/packages/acedb/trunk/debian/acedb-other-belvu.install
trunk/packages/acedb/trunk/debian/acedb-other-dotter.install
trunk/packages/acedb/trunk/debian/acedb-other.install
trunk/packages/acedb/trunk/debian/changelog
trunk/packages/acedb/trunk/debian/compat
trunk/packages/acedb/trunk/debian/control
trunk/packages/acedb/trunk/debian/copyright
trunk/packages/acedb/trunk/debian/dirs
trunk/packages/acedb/trunk/debian/docs
trunk/packages/acedb/trunk/debian/rules
trunk/packages/acedb/trunk/debian/watch
Log:
Adding skeleton for acedb.
Added: trunk/packages/acedb/trunk/debian/README.Debian
===================================================================
--- trunk/packages/acedb/trunk/debian/README.Debian (rev 0)
+++ trunk/packages/acedb/trunk/debian/README.Debian 2009-08-17 16:43:23 UTC (rev 3781)
@@ -0,0 +1,13 @@
+acedb for Debian
+----------------
+
+To package ACEDB is a long term project that will grow with demands.
+
+The proper packaging, i.e. to reduce the size of the binaries in favour
+of an increased acceptance of the distribution's alread shipped classical
+libraries, will need a closer collaboration with upstream and/or a higher
+personal investment.
+
+Whoever feels like it please go ahead.
+
+ -- Steffen Moeller <moeller at debian.org> Mon, 17 Aug 2009 14:39:57 +0200
Added: trunk/packages/acedb/trunk/debian/acedb-other-belvu.install
===================================================================
--- trunk/packages/acedb/trunk/debian/acedb-other-belvu.install (rev 0)
+++ trunk/packages/acedb/trunk/debian/acedb-other-belvu.install 2009-08-17 16:43:23 UTC (rev 3781)
@@ -0,0 +1 @@
+bin/belvu
Added: trunk/packages/acedb/trunk/debian/acedb-other-dotter.install
===================================================================
--- trunk/packages/acedb/trunk/debian/acedb-other-dotter.install (rev 0)
+++ trunk/packages/acedb/trunk/debian/acedb-other-dotter.install 2009-08-17 16:43:23 UTC (rev 3781)
@@ -0,0 +1 @@
+bin/dotter
Added: trunk/packages/acedb/trunk/debian/acedb-other.install
===================================================================
--- trunk/packages/acedb/trunk/debian/acedb-other.install (rev 0)
+++ trunk/packages/acedb/trunk/debian/acedb-other.install 2009-08-17 16:43:23 UTC (rev 3781)
@@ -0,0 +1 @@
+bin/efetch
Added: trunk/packages/acedb/trunk/debian/changelog
===================================================================
--- trunk/packages/acedb/trunk/debian/changelog (rev 0)
+++ trunk/packages/acedb/trunk/debian/changelog 2009-08-17 16:43:23 UTC (rev 3781)
@@ -0,0 +1,5 @@
+acedb (4.9.39-1) unstable; urgency=low
+
+ * A first part of ACEDB is packaged - the belvu alignment editor.
+
+ -- Steffen Moeller <moeller at debian.org> Mon, 17 Aug 2009 14:39:57 +0200
Added: trunk/packages/acedb/trunk/debian/compat
===================================================================
--- trunk/packages/acedb/trunk/debian/compat (rev 0)
+++ trunk/packages/acedb/trunk/debian/compat 2009-08-17 16:43:23 UTC (rev 3781)
@@ -0,0 +1 @@
+7
Added: trunk/packages/acedb/trunk/debian/control
===================================================================
--- trunk/packages/acedb/trunk/debian/control (rev 0)
+++ trunk/packages/acedb/trunk/debian/control 2009-08-17 16:43:23 UTC (rev 3781)
@@ -0,0 +1,51 @@
+Source: acedb
+Section: science
+Priority: extra
+Maintainer: Steffen Moeller <moeller at debian.org>
+Build-Depends: debhelper (>= 7), libreadline5-dev, libgtk2.0-dev
+Standards-Version: 3.8.3
+Homepage: http://www.acedb.org/
+
+Package: acedb-other-dotter
+Provides: dotter
+Architecture: any
+Depends: ${shlibs:Depends}, ${misc:Depends}
+Description: visualisation of sequence similarity
+ For the analysis of biological sequences, a general
+ principle is to corresponding regions between
+ related proteins, RNA or DNA.
+ .
+ Dotter displays graphically the similarity of
+ DNA or protein sequence to itself or another
+ sequence.
+
+
+Package: acedb-other-belvu
+Provides: belvu
+Architecture: any
+Depends: ${shlibs:Depends}, ${misc:Depends}
+Description: multiple sequence alignment editor
+ For the analysis of biological sequences, a general
+ principle is to corresponding regions between
+ related proteins, RNA or DNA. Written next to
+ each other, corresponding positions above each
+ other, one has prepared an alignment.
+ .
+ Belvu is best known for its perfect implementation
+ of the Stockholm format of multiple sequence alignments,
+ since upstream is maintaining that. That is for
+ instance used in the Pfam and Rfam databases.
+
+
+Package: acedb-other
+Provides: efetch
+Architecture: any
+Depends: ${shlibs:Depends}, ${misc:Depends}
+Description: retrieval of DNA or protein sequences
+ This package collects all those smallish applications
+ that acedb collects under its 'other' target of
+ its Makefile.
+ .
+ efetch: presumably short for 'entry fetch' collects
+ sequence information from common DNA and protein
+ databases.
Added: trunk/packages/acedb/trunk/debian/copyright
===================================================================
--- trunk/packages/acedb/trunk/debian/copyright (rev 0)
+++ trunk/packages/acedb/trunk/debian/copyright 2009-08-17 16:43:23 UTC (rev 3781)
@@ -0,0 +1,28 @@
+This package was debianized by Steffen Moeller <moeller at debian.org> on
+Mon, 17 Aug 2009 14:39:57 +0200.
+
+It was downloaded from <url://example.com>
+
+Upstream Author(s):
+
+ <put author's name and email here>
+ <likewise for another author>
+
+Copyright:
+
+ <Copyright (C) YYYY Name OfAuthor>
+ <likewise for another author>
+
+License:
+
+ <Put the license of the package here indented by 4 spaces>
+
+The Debian packaging is:
+
+ Copyright (C) 2009 Steffen Moeller <moeller at debian.org>
+
+and is licensed under the GPL version 3,
+see `/usr/share/common-licenses/GPL-3'.
+
+# Please also look if there are files or directories which have a
+# different copyright/license attached and list them here.
Added: trunk/packages/acedb/trunk/debian/dirs
===================================================================
--- trunk/packages/acedb/trunk/debian/dirs (rev 0)
+++ trunk/packages/acedb/trunk/debian/dirs 2009-08-17 16:43:23 UTC (rev 3781)
@@ -0,0 +1,2 @@
+usr/bin
+usr/sbin
Added: trunk/packages/acedb/trunk/debian/rules
===================================================================
--- trunk/packages/acedb/trunk/debian/rules (rev 0)
+++ trunk/packages/acedb/trunk/debian/rules 2009-08-17 16:43:23 UTC (rev 3781)
@@ -0,0 +1,87 @@
+#!/usr/bin/make -f
+# -*- makefile -*-
+
+# Uncomment this to turn on verbose mode.
+#export DH_VERBOSE=1
+
+# This has to be exported to make some magic below work.
+export DH_OPTIONS
+
+#export ACEDB_MACHINE=LINUX_4
+export ACEDB_MACHINE=LINUX_64
+
+configure-stamp:
+ ln -sf bin.$(ACEDB_MACHINE) bin
+ touch $@
+
+#Architecture
+build: build-arch build-indep
+
+build-arch: build-arch-stamp
+build-arch-stamp: configure-stamp
+
+ # Add here commands to compile the arch part of the package.
+ $(MAKE) tools other
+ touch $@
+
+build-indep: build-indep-stamp
+build-indep-stamp: configure-stamp
+
+ # Add here commands to compile the indep part of the package.
+ #$(MAKE) doc
+ touch $@
+
+clean:
+ dh_testdir
+ dh_testroot
+ rm -f build-arch-stamp build-indep-stamp configure-stamp
+ $(MAKE) clean
+ dh_clean bin
+
+install: install-indep install-arch
+install-indep:
+ dh_testdir
+ dh_testroot
+ dh_prep -i
+ dh_installdirs -i
+ dh_install -i
+
+install-arch:
+ dh_testdir
+ dh_testroot
+ dh_prep -s
+ dh_installdirs -s
+ dh_install -s
+
+# Must not depend on anything. This is to be called by
+# binary-arch/binary-indep
+# in another 'make' thread.
+binary-common:
+ dh_testdir
+ dh_testroot
+ dh_installchangelogs
+ dh_installdocs
+ dh_installexamples
+# dh_installmenu
+ dh_installman
+ dh_link
+ dh_strip
+ dh_compress
+ dh_fixperms
+ dh_makeshlibs
+ dh_installdeb
+ dh_shlibdeps
+ dh_gencontrol
+ dh_md5sums
+ dh_builddeb
+
+# Build architecture independant packages using the common target.
+binary-indep: build-indep install-indep
+ $(MAKE) -f debian/rules DH_OPTIONS=-i binary-common
+
+# Build architecture dependant packages using the common target.
+binary-arch: build-arch install-arch
+ $(MAKE) -f debian/rules DH_OPTIONS=-s binary-common
+
+binary: binary-arch binary-indep
+.PHONY: build clean binary-indep binary-arch binary install install-indep install-arch configure
Property changes on: trunk/packages/acedb/trunk/debian/rules
___________________________________________________________________
Added: svn:executable
+ *
Added: trunk/packages/acedb/trunk/debian/watch
===================================================================
--- trunk/packages/acedb/trunk/debian/watch (rev 0)
+++ trunk/packages/acedb/trunk/debian/watch 2009-08-17 16:43:23 UTC (rev 3781)
@@ -0,0 +1,2 @@
+version=3
+fto://ftp://ftp.sanger.ac.uk/pub/acedb/SUPPORTED/ACEDB-source\.([0-9.])\.tar\.gz
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