[med-svn] r3808 - in trunk/packages/libgo-perl/trunk/debian: . patches

Charles Plessy plessy at alioth.debian.org
Mon Aug 24 08:30:06 UTC 2009


Author: plessy
Date: 2009-08-24 08:30:05 +0000 (Mon, 24 Aug 2009)
New Revision: 3808

Added:
   trunk/packages/libgo-perl/trunk/debian/README.source
   trunk/packages/libgo-perl/trunk/debian/patches/fix-pod.patch
Modified:
   trunk/packages/libgo-perl/trunk/debian/changelog
   trunk/packages/libgo-perl/trunk/debian/compat
   trunk/packages/libgo-perl/trunk/debian/control
   trunk/packages/libgo-perl/trunk/debian/copyright
   trunk/packages/libgo-perl/trunk/debian/patches/series
   trunk/packages/libgo-perl/trunk/debian/rules
   trunk/packages/libgo-perl/trunk/debian/watch
Log:
New upstream version.

Pacakge completely refreshed with dh-make-perl:

   * debian/rules, debian/control and debian/compat and debian/watch
     refreshed with dh-make-perl 0.59. This converts the package to
     debhelper 7.3 from CDBS.
   * Adjusted the list of recommended packages after inspection of
     the upstream source code (grep -ri XML . | grep use).
   * Added README.source to point to the quilt documentation.
   * Refreshed debian/copyright to the latest machine-readable format.


Added: trunk/packages/libgo-perl/trunk/debian/README.source
===================================================================
--- trunk/packages/libgo-perl/trunk/debian/README.source	                        (rev 0)
+++ trunk/packages/libgo-perl/trunk/debian/README.source	2009-08-24 08:30:05 UTC (rev 3808)
@@ -0,0 +1,2 @@
+This package uses quilt to patch the original upstream files. Please refer to
+‘/usr/share/doc/quilt/README.source’ for more information.

Modified: trunk/packages/libgo-perl/trunk/debian/changelog
===================================================================
--- trunk/packages/libgo-perl/trunk/debian/changelog	2009-08-24 04:01:57 UTC (rev 3807)
+++ trunk/packages/libgo-perl/trunk/debian/changelog	2009-08-24 08:30:05 UTC (rev 3808)
@@ -1,3 +1,16 @@
+libgo-perl (0.10-1) unstable; urgency=low
+
+  * New upstream version.
+  * debian/rules, debian/control and debian/compat and debian/watch
+    refreshed with dh-make-perl 0.59. This converts the package to
+    debhelper 7.3 from CDBS.
+  * Adjusted the list of recommended packages after inspection of
+    the upstream source code (grep -ri XML . | grep use).
+  * Added README.source to point to the quilt documentation.
+  * Refreshed debian/copyright to the latest machine-readable format.
+
+ -- Charles Plessy <plessy at debian.org>  Mon, 24 Aug 2009 17:24:29 +0900
+
 libgo-perl (0.09-1) unstable; urgency=low
 
   * New upstream version

Modified: trunk/packages/libgo-perl/trunk/debian/compat
===================================================================
--- trunk/packages/libgo-perl/trunk/debian/compat	2009-08-24 04:01:57 UTC (rev 3807)
+++ trunk/packages/libgo-perl/trunk/debian/compat	2009-08-24 08:30:05 UTC (rev 3808)
@@ -1 +1 @@
-5
+7

Modified: trunk/packages/libgo-perl/trunk/debian/control
===================================================================
--- trunk/packages/libgo-perl/trunk/debian/control	2009-08-24 04:01:57 UTC (rev 3807)
+++ trunk/packages/libgo-perl/trunk/debian/control	2009-08-24 08:30:05 UTC (rev 3808)
@@ -1,24 +1,25 @@
 Source: libgo-perl
 Section: perl
 Priority: optional
+Build-Depends: debhelper (>= 7.3), quilt
+Build-Depends-Indep: perl, perl-modules, libdata-stag-perl
 Maintainer: Debian-Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
 DM-Upload-Allowed: yes
 Uploaders: Charles Plessy <plessy at debian.org>
-Build-Depends: debhelper (>= 5), cdbs, quilt
-Build-Depends-Indep: libdata-stag-perl, libxml-perl, libxml-writer-perl, xsltproc
-Standards-Version: 3.7.3
+Standards-Version: 3.8.3
 Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/libgo-perl/trunk/?rev=0&sc=0
 Vcs-Svn: svn://svn.debian.org/svn/debian-med/trunk/packages/libgo-perl/trunk/
 Homepage: http://geneontology.sourceforge.net/
 
 Package: libgo-perl
 Architecture: all
-Depends: ${perl:Depends}
-Recommends: libdata-stag-perl
-Suggests: xsltproc, libxml-perl, bioperl
+Depends: ${perl:Depends}, ${misc:Depends}, perl-modules,
+  libdata-stag-perl
+Recommends: libxml-libxml-perl, libxml-libxslt-perl, libxml-writer-perl, libxml-checker-perl, xsltproc
+Suggests: bioperl
 Description: perl modules for GO and other OBO ontologies
  This is a collection of perl code for dealing with Gene Ontologies (GO) and
- Open Biomedical Ontologies (OBO) style ontologies. It is part of the `go-dev'
+ Open Biomedical Ontologies (OBO) style ontologies. It is part of the ‘go-dev’
  distribution, but this Debian package is made from the CPAN archive. This
  package contains both scripts (which can be used with no knowledge of perl),
  and libraries which will be of use to perl programmers using GO or OBO.

Modified: trunk/packages/libgo-perl/trunk/debian/copyright
===================================================================
--- trunk/packages/libgo-perl/trunk/debian/copyright	2009-08-24 04:01:57 UTC (rev 3807)
+++ trunk/packages/libgo-perl/trunk/debian/copyright	2009-08-24 08:30:05 UTC (rev 3808)
@@ -1,18 +1,26 @@
-Format-Specification: http://wiki.debian.org/Proposals/CopyrightFormat?action=recall&rev=129
-Upstream-Author: Chris Mungall <cjm at fruitfly.org>
-Packaged-By: Charles Plessy <plessy at debian.org>
-Packaged-Date: Mon, 26 Nov 2007 14:56:58 +0900
-Original-Source-Location: http://search.cpan.org/CPAN/authors/id/C/CM/CMUNGALL/go-perl-0.09.tar.gz
+Machine-readable license summary, see ‘http://dep.debian.net/deps/dep5/’.
 
-Files: *
-Copyright: © 2000-2008 Chris Mungall <cjm at fruitfly.org>
-License: GPL-1+ | Artistic
- This module is free software. You may distribute under the same terms as perl itself.
-X-Comment: On Debian systems, the complete text of the GNU General
- Public License can be found in `/usr/share/common-licenses/GPL', 
- while the complete text of the Artistic License can be found in
- `/usr/share/common-licenses/Artistic'.
+Name      :  go-perl
+Contact   :  Chris Mungall <cjm at fruitfly.org>
+Source    :  http://search.cpan.org/CPAN/authors/id/C/CM/CMUNGALL/go-perl-0.10.tar.gz
 
-Files: debian/*
-Copyright: © 2007,2008 Charles Plessy <plessy at debian.org>
-License: same as go-perl itself
+Copyright :  2000-2009 Chris Mungall <cjm at fruitfly.org>
+License   :  Perl
+	
+	This module is free software. You may distribute under the same terms as perl itself.
+
+License   :  Perl
+	
+	This program is free software; you can redistribute it and/or modify
+	it under the terms of either:
+	
+	a) the GNU General Public License as published by the Free Software
+	   Foundation; either version 1, or (at your option) any later
+	   version, or
+	
+	b) the "Artistic License" which comes with Perl.
+
+On Debian systems, the complete text of the latest version of the GNU General
+Public License can be found in ‘/usr/share/common-licenses/GPL’, while the
+complete text of the Artistic License can be found in
+‘/usr/share/common-licenses/Artistic’.

Added: trunk/packages/libgo-perl/trunk/debian/patches/fix-pod.patch
===================================================================
--- trunk/packages/libgo-perl/trunk/debian/patches/fix-pod.patch	                        (rev 0)
+++ trunk/packages/libgo-perl/trunk/debian/patches/fix-pod.patch	2009-08-24 08:30:05 UTC (rev 3808)
@@ -0,0 +1,14 @@
+Description: Corrects POD documentation
+Author: Charles Plessy <plessy at debian.org>
+Forwarded: no
+--- a/GO/Parser.pm.orig	2009-08-24 17:08:01.000000000 +0900
++++ b/GO/Parser.pm	2009-08-24 17:08:18.000000000 +0900
+@@ -170,6 +170,8 @@
+ filesystem, for fast access. The obj_storable representation may not
+ be portable
+ 
++=back
++
+ =head2 PARSING ARCHITECTURE
+ 
+ Each parser fires XML B<events>. The XML events are known as

Modified: trunk/packages/libgo-perl/trunk/debian/patches/series
===================================================================
--- trunk/packages/libgo-perl/trunk/debian/patches/series	2009-08-24 04:01:57 UTC (rev 3807)
+++ trunk/packages/libgo-perl/trunk/debian/patches/series	2009-08-24 08:30:05 UTC (rev 3808)
@@ -1,2 +1,3 @@
 fix-whatis-entries.patch
 fix-missing-manpages
+fix-pod.patch

Modified: trunk/packages/libgo-perl/trunk/debian/rules
===================================================================
--- trunk/packages/libgo-perl/trunk/debian/rules	2009-08-24 04:01:57 UTC (rev 3807)
+++ trunk/packages/libgo-perl/trunk/debian/rules	2009-08-24 08:30:05 UTC (rev 3808)
@@ -1,9 +1,9 @@
 #!/usr/bin/make -f
 
-include /usr/share/cdbs/1/rules/patchsys-quilt.mk
-include /usr/share/cdbs/1/rules/debhelper.mk
-include /usr/share/cdbs/1/class/perlmodule.mk
+%:
+	dh --with quilt $@
 
-binary-fixup/libgo-perl::
+override_dh_install:
+	dh_install
 	prename 's/\.pl//' $(CURDIR)/debian/libgo-perl/usr/bin/*
 	prename 's/\.pl//' $(CURDIR)/debian/libgo-perl/usr/share/man/man1/*.pl*

Modified: trunk/packages/libgo-perl/trunk/debian/watch
===================================================================
--- trunk/packages/libgo-perl/trunk/debian/watch	2009-08-24 04:01:57 UTC (rev 3807)
+++ trunk/packages/libgo-perl/trunk/debian/watch	2009-08-24 08:30:05 UTC (rev 3808)
@@ -1,2 +1,2 @@
 version=3
-http://search.cpan.org/CPAN/authors/id/C/CM/CMUNGALL/go-perl-([\d\.]*)\.tar.gz
+http://search.cpan.org/dist/go-perl/   .*/go-perl-v?(\d[\d.-]+)\.(?:tar(?:\.gz|\.bz2)?|tgz|zip)$




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