[med-svn] r3077 - trunk/packages/last-align/trunk/debian

[plessy at alioth.debian.org]

Author: plessy
Date: 2009-02-02 05:09:39 +0000 (Mon, 02 Feb 2009)
New Revision: 3077

Added:
   trunk/packages/last-align/trunk/debian/NEWS
Modified:
   trunk/packages/last-align/trunk/debian/README.source
   trunk/packages/last-align/trunk/debian/changelog
   trunk/packages/last-align/trunk/debian/copyright
   trunk/packages/last-align/trunk/debian/rules
Log:
New upstream release breaking backward compatibility.


Added: trunk/packages/last-align/trunk/debian/NEWS
===================================================================
--- trunk/packages/last-align/trunk/debian/NEWS	                        (rev 0)
+++ trunk/packages/last-align/trunk/debian/NEWS	2009-02-02 05:09:39 UTC (rev 3077)
@@ -0,0 +1,6 @@
+last-align (39-1) unstable; urgency=low
+
+  Old lastdb protein databases built with last-align version lower than 39
+  won't work properly: you need to re-run lastdb.
+
+ -- Charles Plessy <plessy at debian.org>  Mon, 02 Feb 2009 12:42:26 +0900


Property changes on: trunk/packages/last-align/trunk/debian/NEWS
___________________________________________________________________
Name: svn:mergeinfo
   + 

Modified: trunk/packages/last-align/trunk/debian/README.source
===================================================================
--- trunk/packages/last-align/trunk/debian/README.source	2009-01-31 12:53:56 UTC (rev 3076)
+++ trunk/packages/last-align/trunk/debian/README.source	2009-02-02 05:09:39 UTC (rev 3077)
@@ -1,9 +1,3 @@
-This package is maintained by the Debian Med packaging team. Please refer to
-our group policy if you would like to commit to our Subversion repository. All
-Debian developpers have write acces to it.
-
-http://debian-med.alioth.debian.org/docs/policy.html
-
 Upstream sources are distributed as a ZIP archive. The debian/rules file
 contains a rule named `get-orig-source' to create a gzipped tar archive whose
 name follows the Debian policy.

Modified: trunk/packages/last-align/trunk/debian/changelog
===================================================================
--- trunk/packages/last-align/trunk/debian/changelog	2009-01-31 12:53:56 UTC (rev 3076)
+++ trunk/packages/last-align/trunk/debian/changelog	2009-02-02 05:09:39 UTC (rev 3077)
@@ -1,3 +1,17 @@
+last-align (39-1) unstable; urgency=low
+
+  * New upstream release.
+    - Bugfix: for protein alignments, tyrosine was forbidden in initial
+      matches.
+    - *Old lastdb protein databases won't work properly: you need to re-run
+      lastdb.*
+  * Added debian/NEWS.Debian to indicate the backward incompatibility.
+  * Debian/changelog: removed vanity entries and incremented copyright year.
+  * Transferred informations about packaging practices and repository from
+    README.source to README.Debian.
+
+ -- Charles Plessy <plessy at debian.org>  Mon, 02 Feb 2009 12:42:26 +0900
+
 last-align (37-1) unstable; urgency=low
 
   * New upstream release. 
@@ -7,7 +21,7 @@
       Linux-2.6.13/x86_64/gcc-4.0.2).
     - Made lastdb radix sort a bit faster, with the oracle array trick.
     - Allowed the mismatch score to be zero, due to a request.
-    - Made gapped extension faster for short sequences (e.g. tag mapping).
+    - Made gaped extension faster for short sequences (e.g. tag mapping).
     - Bugfix: the sequence names weren't printed correctly for
       match-counting output (-j 0).
     - Fixed compiler warnings with gcc 4.3.

Modified: trunk/packages/last-align/trunk/debian/copyright
===================================================================
--- trunk/packages/last-align/trunk/debian/copyright	2009-01-31 12:53:56 UTC (rev 3076)
+++ trunk/packages/last-align/trunk/debian/copyright	2009-02-02 05:09:39 UTC (rev 3077)
@@ -1,11 +1,9 @@
 Format-Specification: http://wiki.debian.org/Proposals/CopyrightFormat
 Upstream-Author: Martin C. Frith, Michiaki Hamada and Paul B. Horton <last at cbrc.jp>
-X-Packaged-By: Charles Plessy <plessy at debian.org>
-X-Packaged-Date: Wed, 10 Sep 2008 19:49:11 +0900
-Upstream-Source: http://last.cbrc.jp/archive/last-31.zip
+Upstream-Source: http://last.cbrc.jp/archive/last-39.zip
 
 Files: *
-Copyright: © 2008 Martin C. Frith, Michiaki Hamada and Paul B. Horton <last at cbrc.jp>
+Copyright: © 2008–2009 Martin C. Frith, Michiaki Hamada and Paul B. Horton <last at cbrc.jp>
 License: GPL-3+
  This program is free software: you can redistribute it and/or modify
  it under the terms of the GNU General Public License as published by
@@ -36,6 +34,6 @@
 License: GPL-3+
 
 Files: debian/*
-Copyright: © 2008, Charles Plessy <plessy at debian.org>
+Copyright: © 2008–2009, Charles Plessy <plessy at debian.org>
 License: Same as LAST itself
  See above.

Modified: trunk/packages/last-align/trunk/debian/rules
===================================================================
--- trunk/packages/last-align/trunk/debian/rules	2009-01-31 12:53:56 UTC (rev 3076)
+++ trunk/packages/last-align/trunk/debian/rules	2009-02-02 05:09:39 UTC (rev 3077)
@@ -1,5 +1,11 @@
 #!/usr/bin/make -f
 
+# This package is maintained by the Debian Med packaging team. Please refer to
+# our group policy if you would like to commit to our Subversion repository. All
+# Debian developpers have write acces to it.
+# 
+# http://debian-med.alioth.debian.org/docs/policy.html
+
 include /usr/share/cdbs/1/rules/debhelper.mk
 include /usr/share/cdbs/1/class/makefile.mk