[med-svn] r2967 - in trunk/packages/velvet/trunk/debian: . patches

plessy at alioth.debian.org plessy at alioth.debian.org
Mon Jan 12 15:07:00 UTC 2009 

Author: plessy
Date: 2009-01-12 15:06:59 +0000 (Mon, 12 Jan 2009)
New Revision: 2967

Modified:
   trunk/packages/velvet/trunk/debian/README.Debian
   trunk/packages/velvet/trunk/debian/changelog
   trunk/packages/velvet/trunk/debian/control
   trunk/packages/velvet/trunk/debian/copyright
   trunk/packages/velvet/trunk/debian/install
   trunk/packages/velvet/trunk/debian/patches/20_external_zlib.patch
   trunk/packages/velvet/trunk/debian/watch
Log:
Polished copyright file, fixed minor errors; ready for upload.


Modified: trunk/packages/velvet/trunk/debian/README.Debian
===================================================================
--- trunk/packages/velvet/trunk/debian/README.Debian	2009-01-12 10:38:45 UTC (rev 2966)
+++ trunk/packages/velvet/trunk/debian/README.Debian	2009-01-12 15:06:59 UTC (rev 2967)
@@ -1,8 +1,6 @@
 velvet for Debian
 -----------------
 
-This is just a draft. In particular, I cut-pasted some compilation options from
-the web until the building worked, and I do not know that I am doing. Use it at
-your own risk !
+Third party scripts have been placed in /usr/share/velvet.
 
- -- Charles Plessy <plessy at debian.org>  Thu, 19 Jun 2008 11:57:43 +0900
+ -- Charles Plessy <plessy at debian.org>  Tue, 13 Jan 2009 00:06:25 +0900

Modified: trunk/packages/velvet/trunk/debian/changelog
===================================================================
--- trunk/packages/velvet/trunk/debian/changelog	2009-01-12 10:38:45 UTC (rev 2966)
+++ trunk/packages/velvet/trunk/debian/changelog	2009-01-12 15:06:59 UTC (rev 2967)
@@ -1,4 +1,4 @@
-velvet (0.7.20-1) UNRELEASED; urgency=low
+velvet (0.7.24-1) unstable; urgency=low
 
   * Initial release (Closes: #487026)
 

Modified: trunk/packages/velvet/trunk/debian/control
===================================================================
--- trunk/packages/velvet/trunk/debian/control	2009-01-12 10:38:45 UTC (rev 2966)
+++ trunk/packages/velvet/trunk/debian/control	2009-01-12 15:06:59 UTC (rev 2967)
@@ -31,6 +31,7 @@
 
 Package: velvet-example
 Architecture: all
-Description: Example data for the Velvet sequence assembler.
+Depends: ${misc:Depends}
+Description: Example data for the Velvet sequence assembler
  This package contains the example data distributed in the sources of Velvet,
  a de novo genomic assembler. 

Modified: trunk/packages/velvet/trunk/debian/copyright
===================================================================
--- trunk/packages/velvet/trunk/debian/copyright	2009-01-12 10:38:45 UTC (rev 2966)
+++ trunk/packages/velvet/trunk/debian/copyright	2009-01-12 15:06:59 UTC (rev 2967)
@@ -1,19 +1,61 @@
-X-Format-Specification: http://wiki.debian.org/Proposals/CopyrightFormat
-X-Debianized-By: Charles Plessy <plessy at debian.org>
-X-Debinized-Date: Thu, 19 Jun 2008 11:57:43 +0900.
-X-Upstream-Author: Daniel Zerbino,
+Format-Specification: http://wiki.debian.org/Proposals/CopyrightFormat
+Upstream-Name: Velvet
+Upstream-Maintainer: Daniel Zerbino,
  John-Mark Gurney (Fibonacci heap implementation),
  Guy Slater (memory management routines),
  Ewan Birney (hashing function)
-X-Homepage: http://www.ebi.ac.uk/~zerbino/velvet/
+Upstream-Source: http://www.ebi.ac.uk/~zerbino/velvet/velvet_0.7.24.tgz
 
 Files: *
-Copyright: (C) 2006-2008 Daniel Zerbino
-License: GPL
+Copyright: © 2006-2008 Daniel Zerbino
+License: GPL-2+
+ This program is free software; you can redistribute it and/or modify
+ it under the terms of the GNU General Public License as published by
+ the Free Software Foundation; either version 2 of the License, or
+ (at your option) any later version.
+ .
+ This program is distributed in the hope that it will be useful,
+ but WITHOUT ANY WARRANTY; without even the implied warranty of
+ MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+ GNU General Public License for more details.
+ .
+ You should have received a copy of the GNU General Public License along
+ with this program; if not, write to the Free Software Foundation, Inc.,
+ 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
 X-Comment: On Debian systems, the complete text of the GNU General Public
  License can be found in `/usr/share/common-licenses/GPL'.
 
+Files: /third-party/afg_handling/*
+Copyright: © 2008 Simon Gladman <simon.gladman at csiro.au>
+License: GPL-2+
+
+Files: /third-party/z-lib-1.2.3
+Copyright: © 1995-1998 Jean-loup Gailly and Mark Adler
+License:
+ This software is provided 'as-is', without any express or implied
+ warranty.  In no event will the authors be held liable for any damages
+ arising from the use of this software.
+ .
+ Permission is granted to anyone to use this software for any purpose,
+ including commercial applications, and to alter it and redistribute it
+ freely, subject to the following restrictions:
+ .
+ 1. The origin of this software must not be misrepresented; you must not
+    claim that you wrote the original software. If you use this software
+    in a product, an acknowledgment in the product documentation would be
+    appreciated but is not required.
+ 2. Altered source versions must be plainly marked as such, and must not be
+    misrepresented as being the original software.
+ 3. This notice may not be removed or altered from any source distribution.
+ .
+ Jean-loup Gailly        Mark Adler
+ jloup at gzip.org          madler at alumni.caltech.edu
+
+Files: third-party/layout/*
+Copyright: © 2008 Paul Harrison (pfh at logarithmic.net)
+License: GPL-2+
+
 Files: debian/*
-Copyright: 2008 Andreas Tille <tille at debian.org>,
- Charles Plessy <plessy at debian.org>
+Copyright: 2008-2009 Charles Plessy <plessy at debian.org>
+           2008 Andreas Tille <tille at debian.org>,
 License: Same as velvet

Modified: trunk/packages/velvet/trunk/debian/install
===================================================================
--- trunk/packages/velvet/trunk/debian/install	2009-01-12 10:38:45 UTC (rev 2966)
+++ trunk/packages/velvet/trunk/debian/install	2009-01-12 15:06:59 UTC (rev 2967)
@@ -1,2 +1,4 @@
 velvetg	usr/bin
 velveth	usr/bin
+third-party/afg_handling/	usr/share/velvet
+third-party/layout/		usr/share/velvet

Modified: trunk/packages/velvet/trunk/debian/patches/20_external_zlib.patch
===================================================================
--- trunk/packages/velvet/trunk/debian/patches/20_external_zlib.patch	2009-01-12 10:38:45 UTC (rev 2966)
+++ trunk/packages/velvet/trunk/debian/patches/20_external_zlib.patch	2009-01-12 15:06:59 UTC (rev 2967)
@@ -1,3 +1,7 @@
+Author: Andreas Tille
+Description: To build velvet on Debian's zlib
+License: Same as velvet
+Forwarded: Daniel Zerbino (zerbino <at> ebi <dot> ac <dot> uk)
 --- velvet_0.7.20.orig/src/readSet.c
 +++ velvet_0.7.20/src/readSet.c
 @@ -28,11 +28,7 @@

Modified: trunk/packages/velvet/trunk/debian/watch
===================================================================
--- trunk/packages/velvet/trunk/debian/watch	2009-01-12 10:38:45 UTC (rev 2966)
+++ trunk/packages/velvet/trunk/debian/watch	2009-01-12 15:06:59 UTC (rev 2967)
@@ -1,12 +1,2 @@
 version=3
-
-# just make the 'latest' link very low to obtain the tarball with real version number
-# Unfortunately the latest version number is not linked explicitely at the upstream
-# homepage - ask upstream to use an explicite link?
-# At least the file exists on the webserver if you try to download it
-
-opts="uversionmangle=s/latest/0.0.0/" \
-http://www.ebi.ac.uk/~zerbino/velvet velvet_(.*)\.tgz
-
-# opts="uversionmangle=s/latest/0.0.0/" \
-# http://www.ebi.ac.uk/~zerbino/velvet/velvet_(.*)\.tgz
+http://www.ebi.ac.uk/~zerbino/velvet/velvet_([.\d]*).tgz

More information about the debian-med-commit mailing list