[med-svn] r2998 - trunk/packages/bioperl/trunk/debian

[plessy at alioth.debian.org]

Author: plessy
Date: 2009-01-16 10:49:17 +0000 (Fri, 16 Jan 2009)
New Revision: 2998

Modified:
   trunk/packages/bioperl/trunk/debian/changelog
   trunk/packages/bioperl/trunk/debian/control
   trunk/packages/bioperl/trunk/debian/rules
Log:
Sorting out dependancies, reenabling tests, and a bit of cleaning.

Modified: trunk/packages/bioperl/trunk/debian/changelog
===================================================================
--- trunk/packages/bioperl/trunk/debian/changelog	2009-01-16 08:24:21 UTC (rev 2997)
+++ trunk/packages/bioperl/trunk/debian/changelog	2009-01-16 10:49:17 UTC (rev 2998)
@@ -8,8 +8,9 @@
       libsvg-graph-perl, libbio-asn1-entrezgene-perl to Build-Depends-Indep.
     - Added bioperl-run to the recommended packages.
     - Updated my email address.
-  * debian/rules build: building Makefile.PL as bioperl does not use it by
-    default anymore.
+  * debian/rules build:
+    - building Makefile.PL as bioperl does not use it by default anymore.
+    - re-enabled the tests.
   * debian/README.Debian: reference transferred to debian/reference.
   * debian/watch: BioPerl is now mixed case.
 

Modified: trunk/packages/bioperl/trunk/debian/control
===================================================================
--- trunk/packages/bioperl/trunk/debian/control	2009-01-16 08:24:21 UTC (rev 2997)
+++ trunk/packages/bioperl/trunk/debian/control	2009-01-16 10:49:17 UTC (rev 2998)
@@ -21,26 +21,23 @@
  libconvert-binary-c-perl,
  libgraph-perl,
  libgraphviz-perl,
- libhtml-entities-perl,
  libhtml-parser-perl,
- libhttp-request-common-perl,
- liblwp-useragent-perl,
  libmath-random-perl,
- libpostcript-textblock-perl,
+ libpostscript-perl,
  libset-scalar-perl,
  libsoap-lite-perl,
  libspreadsheet-parseexcel-perl,
  libstorable-perl,
  libsvg-graph-perl,
 # libtext-parsewords-perl, # provided by Perl 5.10
- liburi-escape-perl,
+ liburi-perl,
  libxml-dom-xpath-perl,
  libxml-parser-perl,
- libxml-parser-perlsax-perl,
  libxml-sax-perl,
  libxml-sax-writer-perl,
- libxml-twix-perl,
+ libxml-twig-perl,
  libxml-writer-perl
+ libwww-perl
 Standards-Version: 3.8.0
 Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/bioperl/trunk/?rev=0&sc=0
 Vcs-Svn: svn://svn.debian.org/svn/debian-med/trunk/packages/bioperl/trunk/
@@ -54,7 +51,7 @@
  liburi-perl,
  libxml-writer-perl
 Suggests:
-# Recommended in Build.PL (we want them to run the tests)
+# Recommended in Build.PL
  libace-perl,
  libalgorithm-munkres-perl,
  libarray-compare-perl,
@@ -63,12 +60,9 @@
  libconvert-binary-c-perl,
  libgraph-perl,
  libgraphviz-perl,
- libhtml-entities-perl,
  libhtml-parser-perl,
- libhttp-request-common-perl,
- liblwp-useragent-perl,
  libmath-random-perl,
- libpostcript-textblock-perl,
+ libpostscript-perl,
  libset-scalar-perl,
  libsoap-lite-perl,
  libspreadsheet-parseexcel-perl,
@@ -76,14 +70,14 @@
  libsvg-graph-perl,
 # provided by Perl 5.10 ?
  libtext-parsewords-perl,
- liburi-escape-perl,
+ liburi-perl,
  libxml-dom-xpath-perl,
  libxml-parser-perl,
- libxml-parser-perlsax-perl,
  libxml-sax-perl,
  libxml-sax-writer-perl,
- libxml-twix-perl,
+ libxml-twig-perl,
  libxml-writer-perl
+ libwww-perl
 # old, still needed ?
 # libclass-autoclass-perl,
 # libdata-stag-xmlwriter-perl,

Modified: trunk/packages/bioperl/trunk/debian/rules
===================================================================
--- trunk/packages/bioperl/trunk/debian/rules	2009-01-16 08:24:21 UTC (rev 2997)
+++ trunk/packages/bioperl/trunk/debian/rules	2009-01-16 10:49:17 UTC (rev 2998)
@@ -27,24 +27,8 @@
 	dh_testroot
 	dh_clean -k
 	dh_installdirs usr/share/perl5
-
-	# Add here commands to install the package into debian/bioperl.
 	$(MAKE) install PREFIX=$(CURDIR)/debian/bioperl/usr INSTALLMAN3DIR=$(CURDIR)/debian/bioperl/usr/share/man/man3
-#	rm -f debian/bioperl/usr/lib/perl5/*-linux/*/perllocal.pod
-#	rm -f debian/bioperl/usr/lib/perl/5.6.0/perllocal.pod
 	find debian/bioperl -type f -name .packlist | xargs rm -f
-#	-find debian/bioperl/usr/lib/ -depth -type d -empty | xargs rmdir
-#	-chmod a-x debian/bioperl/usr/share/perl5/*.pod
-#	chmod 644 debian/bioperl/usr/share/perl5/Bio/Variation/README
-#	chmod 644 debian/bioperl/usr/share/perl5/Bio/Tools/BPlite/Iteration.pm
-#	chmod 644 debian/bioperl/usr/share/perl5/Bio/Tools/BPpsilite.pm
-#	find debian/bioperl/usr/share/perl5/Bio -type f -exec chmod a-x {} \;
-#X#	chmod 644 debian/bioperl/usr/share/perl5/Bio/Tools/Blast/Run/Makefile.PL
-#	chmod 644 debian/bioperl/usr/share/perl5/Bio/Tools/Blast/CHANGES
-#	chmod 644 debian/bioperl/usr/share/perl5/Bio/Tools/Blast/README
-
-#	-mv debian/bioperl/usr/share/perl5/bptutorial.pl debian/bioperl/usr/share/doc/bioperl/examples/
-
 	# prename is the rename utility written in perl usually available as /usr/bin/rename in Debian.
 	prename s/.pl$$// debian/bioperl/usr/bin/*pl
 	prename s/.pl.1p$$/.1p/ debian/bioperl/usr/share/man/man1/*1p
@@ -54,7 +38,7 @@
 test: build
 	./Build test
 
-binary-indep: build install
+binary-indep: build install test
 	dh_testdir
 	dh_testroot
 #	chmod a-x -R debian/bioperl/usr/share/doc/bioperl/examples