[med-svn] r3016 - in trunk/packages/R: . r-cran-epi r-cran-epi/trunk r-cran-epi/trunk/debian

Sat Jan 17 20:14:42 UTC 2009

Author: tille
Date: 2009-01-17 20:14:42 +0000 (Sat, 17 Jan 2009)
New Revision: 3016

Added:
   trunk/packages/R/r-cran-epi/
   trunk/packages/R/r-cran-epi/trunk/
   trunk/packages/R/r-cran-epi/trunk/debian/
   trunk/packages/R/r-cran-epi/trunk/debian/changelog
   trunk/packages/R/r-cran-epi/trunk/debian/compat
   trunk/packages/R/r-cran-epi/trunk/debian/control
   trunk/packages/R/r-cran-epi/trunk/debian/copyright
   trunk/packages/R/r-cran-epi/trunk/debian/dirs
   trunk/packages/R/r-cran-epi/trunk/debian/links
   trunk/packages/R/r-cran-epi/trunk/debian/rules
   trunk/packages/R/r-cran-epi/trunk/debian/watch
Log:
Another epidemiological R package


Added: trunk/packages/R/r-cran-epi/trunk/debian/changelog
===================================================================

--- trunk/packages/R/r-cran-epi/trunk/debian/changelog	                        (rev 0)
+++ trunk/packages/R/r-cran-epi/trunk/debian/changelog	2009-01-17 20:14:42 UTC (rev 3016)
@@ -0,0 +1,5 @@
+epi (1.0.8-1) unstable; urgency=low
+
+  * Initial release (closes: #).
+
+ -- Andreas Tille <tille at debian.org>  Mon, 24 Nov 2008 22:34:43 +0100

Added: trunk/packages/R/r-cran-epi/trunk/debian/compat
===================================================================
--- trunk/packages/R/r-cran-epi/trunk/debian/compat	                        (rev 0)
+++ trunk/packages/R/r-cran-epi/trunk/debian/compat	2009-01-17 20:14:42 UTC (rev 3016)
@@ -0,0 +1 @@
+7

Added: trunk/packages/R/r-cran-epi/trunk/debian/control
===================================================================
--- trunk/packages/R/r-cran-epi/trunk/debian/control	                        (rev 0)
+++ trunk/packages/R/r-cran-epi/trunk/debian/control	2009-01-17 20:14:42 UTC (rev 3016)
@@ -0,0 +1,33 @@
+Source: epi
+Section: science
+Priority: optional
+Maintainer: Debian-Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+Uploaders: Andreas Tille <tille at debian.org>
+DM-Upload-Allowed: yes
+Build-Depends: debhelper (>= 7.0), cdbs, r-base-dev
+Standards-Version: 3.8.0
+Homepage: http://staff.pubhealth.ku.dk/~bxc/Epi/
+Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/R/r-cran-epi/trunk/?rev=0&sc=0
+Vcs-Svn: svn://svn.debian.org/svn/debian-med/trunk/packages/R/r-cran-epi/trunk/
+
+Package: r-cran-epi
+Architecture: all
+Depends: ${shlibs:Depends}, r-base-core
+Description: GNU R epidemiological analysis
+ Functions for demographic and epidemiological analysis in the Lexis diagram,
+ i.e. register and cohort follow-up data, including interval censored data and
+ representation of multistate data. Also some useful functions for tabulation
+ and plotting. Contains some epidemiological datasets.
+ .
+ The Epi package is mainly focused on "classical" chronic disease epidemiology.
+ The package has grown out of the course Statistical Practice in Epidemiology
+ using R (see http://www.pubhealth.ku.dk/~bxc/SPE).
+ .
+ There is A short introduction to R for Epidemiology available at
+ http://staff.pubhealth.ku.dk/%7Ebxc/Epi/R-intro.pdf
+ Beware that the pages 38-120 of this is merely the manual pages for the Epi
+ package.
+ .
+ Epi is not the only R-package for epidemiological analysis, a package with
+ more affinity to infectious disease epidemiology is the epitools package
+ which is also evailable in Debian.

Added: trunk/packages/R/r-cran-epi/trunk/debian/copyright
===================================================================
--- trunk/packages/R/r-cran-epi/trunk/debian/copyright	                        (rev 0)
+++ trunk/packages/R/r-cran-epi/trunk/debian/copyright	2009-01-17 20:14:42 UTC (rev 3016)
@@ -0,0 +1,28 @@
+Format-Specification: http://wiki.debian.org/Proposals/CopyrightFormat
+Upstream-Author: Bendix Carstensen <bxc at steno.dk>
+Packaged-By: Andreas Tille <tille at debian.org>
+Packaged-Date: Mon, 24 Nov 2008 13:12:38 +0100
+Upstream-Source: http://cran.r-project.org/src/contrib/
+
+Files: *
+License: GPL2+
+Copyright: 2008 Bendix Carstensen, Martyn Plummer, Esa Laara, Michael Hills et. al.
+ This program is free software: you can redistribute it and/or modify
+ it under the terms of the GNU General Public License as published by
+ the Free Software Foundation, either version 2 of the License, or
+ (at your option) any later version.
+ .
+ This program is distributed in the hope that it will be useful,
+ but WITHOUT ANY WARRANTY; without even the implied warranty of
+ MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+ GNU General Public License for more details.
+ .
+ You should have received a copy of the GNU General Public License
+ along with this program.  If not, see <http://www.gnu.org/licenses/>.
+X-Comment: On Debian systems, the complete text of the GNU Public
+ License can be found in `/usr/share/common-licenses/GPL'.
+
+Files: debian/*
+Copyright: © 2008 Andreas Tille <tille at debian.org>
+License: Same as r-cran-epitools itelf
+ (see above)

Added: trunk/packages/R/r-cran-epi/trunk/debian/dirs
===================================================================
--- trunk/packages/R/r-cran-epi/trunk/debian/dirs	                        (rev 0)
+++ trunk/packages/R/r-cran-epi/trunk/debian/dirs	2009-01-17 20:14:42 UTC (rev 3016)
@@ -0,0 +1,2 @@
+usr/share/doc/r-cran-epi
+

Added: trunk/packages/R/r-cran-epi/trunk/debian/links
===================================================================
--- trunk/packages/R/r-cran-epi/trunk/debian/links	                        (rev 0)
+++ trunk/packages/R/r-cran-epi/trunk/debian/links	2009-01-17 20:14:42 UTC (rev 3016)
@@ -0,0 +1,2 @@
+usr/share/doc/r-cran-epi usr/lib/R/site-library/Epi/doc
+

Added: trunk/packages/R/r-cran-epi/trunk/debian/rules
===================================================================
--- trunk/packages/R/r-cran-epi/trunk/debian/rules	                        (rev 0)
+++ trunk/packages/R/r-cran-epi/trunk/debian/rules	2009-01-17 20:14:42 UTC (rev 3016)
@@ -0,0 +1,12 @@
+#!/usr/bin/make -f
+# 							-*- makefile -*-
+# debian/rules file for the Debian/GNU Linux r-cran-epi package
+# Copyright 2008 by Andreas Tille <tille at debian.org>
+
+include /usr/share/R/debian/r-cran.mk
+
+DEB_COMPRESS_EXCLUDE := .pdf
+
+install/$(package)::
+	mv debian/$(package)/usr/lib/R/site-library/Epi/doc/* debian/$(package)/usr/share/doc/$(package)
+	rmdir debian/$(package)/usr/lib/R/site-library/Epi/doc


Property changes on: trunk/packages/R/r-cran-epi/trunk/debian/rules
___________________________________________________________________
Name: svn:executable
   + *

Added: trunk/packages/R/r-cran-epi/trunk/debian/watch
===================================================================
--- trunk/packages/R/r-cran-epi/trunk/debian/watch	                        (rev 0)
+++ trunk/packages/R/r-cran-epi/trunk/debian/watch	2009-01-17 20:14:42 UTC (rev 3016)
@@ -0,0 +1,2 @@
+version=3
+http://cran.r-project.org/src/contrib/Epi_([-\d.]*)\.tar\.gz


