[med-svn] r3059 - trunk/packages/bioperl/trunk/debian

[plessy at alioth.debian.org]

Author: plessy
Date: 2009-01-26 10:36:12 +0000 (Mon, 26 Jan 2009)
New Revision: 3059

Modified:
   trunk/packages/bioperl/trunk/debian/changelog
   trunk/packages/bioperl/trunk/debian/control
   trunk/packages/bioperl/trunk/debian/rules
Log:
Preparation of the non-experimental update.

To be uploaded when all missing build-dependancies will be ready.


Modified: trunk/packages/bioperl/trunk/debian/changelog
===================================================================
--- trunk/packages/bioperl/trunk/debian/changelog	2009-01-26 10:15:08 UTC (rev 3058)
+++ trunk/packages/bioperl/trunk/debian/changelog	2009-01-26 10:36:12 UTC (rev 3059)
@@ -1,3 +1,20 @@
+bioperl (1.6.0-2) UNRELEASED; urgency=low
+
+  * NOT RELEASED YET
+  * Removed patch system (not used):
+    - removed instuctions in debian/rules;
+    - removed quilt from Build-Depends in debian/control.
+  * Re-enabled tests:
+    - uncommented test command in debian/rules;
+    - uncommented previously missing build-dependencies in debian/control.
+    - Re-enabled tests and uncommented build-dependencies accordingly.
+  * Removed libmodule-build-perl and libtest-harness-perl from
+    Build-Depends-Indep (provided by perl-modules).
+  * Better cleaning of empty directories using find -type d -empty -delete
+    instead of rmdir in debian/rules.
+
+ -- Charles Plessy <plessy at debian.org>  Mon, 26 Jan 2009 19:15:12 +0900
+
 bioperl (1.6.0-1) experimental; urgency=low
 
   [ Charles Plessy ]
@@ -2,3 +19,3 @@
   * debian/control
-    - Updated dependancies according to the new upstream release.
+    - Updated dependencies according to the new upstream release.
     - Added the CPAN dependancies of BioPerl to Build-Depends-Indep in order to
@@ -11,7 +28,8 @@
   * debian/patches: removed as not needed (no downloads by default).
   * debian/rules:
     - Uses Build.PL instead of Makefile.PL.
-    - Tests disabled for the experimental upload: not all dependancies are available yet.
+    - Tests disabled for the experimental upload: not all dependencies are
+      available yet.
   * debian/README.{Debian,source}: removed as not needed anymore
   * debian/watch: BioPerl is now mixed case.
 

Modified: trunk/packages/bioperl/trunk/debian/control
===================================================================
--- trunk/packages/bioperl/trunk/debian/control	2009-01-26 10:15:08 UTC (rev 3058)
+++ trunk/packages/bioperl/trunk/debian/control	2009-01-26 10:36:12 UTC (rev 3059)
@@ -6,24 +6,21 @@
 Uploaders: Charles Plessy <plessy at debian.org>,
  Steffen Moeller <moeller at debian.org>,
  David Paleino <d.paleino at gmail.com>
-Build-Depends: debhelper (>= 7), quilt
+Build-Depends: debhelper (>= 7)
 Build-Depends-Indep: perl,
- libmodule-build-perl (>= 0.2808-0.2),
- libtest-harness-perl (>= 2.62),
  libio-string-perl,
  libdata-stag-perl,
 # Recommended in Build.PL (we want them to run the tests)
-#
-# libace-perl,
-# libalgorithm-munkres-perl,
+ libace-perl,
+ libalgorithm-munkres-perl,
  libarray-compare-perl,
  libbio-asn1-entrezgene-perl,
  libclone-perl,
-# libconvert-binary-c-perl,
+ libconvert-binary-c-perl,
  libgraph-perl,
  libgraphviz-perl,
  libhtml-parser-perl,
-# libmath-random-perl,
+ libmath-random-perl,
  libpostscript-perl,
  libset-scalar-perl,
  libsoap-lite-perl,

Modified: trunk/packages/bioperl/trunk/debian/rules
===================================================================
--- trunk/packages/bioperl/trunk/debian/rules	2009-01-26 10:15:08 UTC (rev 3058)
+++ trunk/packages/bioperl/trunk/debian/rules	2009-01-26 10:36:12 UTC (rev 3059)
@@ -1,19 +1,16 @@
 #!/usr/bin/make -f
 
-include /usr/share/quilt/quilt.make
-
-build: patch build-stamp
+build: build-stamp
 build-stamp:
 	dh_testdir
 	perl Build.PL < /dev/null # non-interactive, uses defaults
 	./Build
 ifeq (,$(filter nocheck,$(DEB_BUILD_OPTIONS)))
-# Tests are temporarly disabled in the experimental package.
-#	./Build test
+	./Build test
 endif
 	touch build-stamp
 
-clean: unpatch
+clean:
 	dh_testdir
 	dh_testroot
 	[ ! -f Build ] || ./Build realclean
@@ -32,7 +29,7 @@
 	        --install_path  libdoc=/usr/share/man/man3   \
 		--destdir       $(CURDIR)/debian/bioperl
 	find debian/bioperl -type f -name .packlist | xargs rm
-	rmdir $(CURDIR)/debian/bioperl/usr/lib/perl5/powerpc-linux-gnu-thread-multi/auto/Bio/
+	find $(CURDIR)/debian/bioperl -type d -empty -delete
 	# prename is the rename utility written in perl usually available as /usr/bin/rename in Debian.
 	prename s/.pl$$// debian/bioperl/usr/bin/*pl
 	prename s/.pl.1p$$/.1p/ debian/bioperl/usr/share/man/man1/*1p