[med-svn] r3063 - trunk/community/infrastructure/getData/getData.conf.d

[plessy at alioth.debian.org]

Author: plessy
Date: 2009-01-27 12:11:34 +0000 (Tue, 27 Jan 2009)
New Revision: 3063

Added:
   trunk/community/infrastructure/getData/getData.conf.d/rfam.getData
   trunk/community/infrastructure/getData/getData.conf.d/rfam.getData.mk
Log:
Preliminary Rfam support.


Added: trunk/community/infrastructure/getData/getData.conf.d/rfam.getData
===================================================================
--- trunk/community/infrastructure/getData/getData.conf.d/rfam.getData	                        (rev 0)
+++ trunk/community/infrastructure/getData/getData.conf.d/rfam.getData	2009-01-27 12:11:34 UTC (rev 3063)
@@ -0,0 +1,10 @@
+print STDERR "Reading Canis lupus familiaris configuration file\n";
+
+$toBeMirrored{"dog.genome"}={
+  "name" => "Rfam9.1 - Multiple alignments and covariance models of non-coding RNA families",
+  "tags" => ["rna"],
+  "source" => "ln -s /etc/getData.conf.d/rfam.getData.mk Makefile ; make get unpack",
+  "post-download" => ""
+};
+
+1;

Added: trunk/community/infrastructure/getData/getData.conf.d/rfam.getData.mk
===================================================================
--- trunk/community/infrastructure/getData/getData.conf.d/rfam.getData.mk	                        (rev 0)
+++ trunk/community/infrastructure/getData/getData.conf.d/rfam.getData.mk	2009-01-27 12:11:34 UTC (rev 3063)
@@ -0,0 +1,7 @@
+SHARED_WGET_OPTIONS=$(shell getData --getWgetOptions)
+
+get:
+	wget $SHARED_WGET_OPTIONS ftp://ftp.sanger.ac.uk/pub/databases/Rfam/9.1/*
+
+unpack:
+	for file in *.gz ; do zcat $$file > `basename $$file .gz` ; done