[med-svn] r3577 - trunk/packages/ncbi-epcr/trunk/debian
Charles Plessy
plessy at alioth.debian.org
Thu Jul 2 00:35:44 UTC 2009
Author: plessy
Date: 2009-07-02 00:35:43 +0000 (Thu, 02 Jul 2009)
New Revision: 3577
Added:
trunk/packages/ncbi-epcr/trunk/debian/reference
Modified:
trunk/packages/ncbi-epcr/trunk/debian/changelog
trunk/packages/ncbi-epcr/trunk/debian/copyright
trunk/packages/ncbi-epcr/trunk/debian/rules
Log:
New upstream release plus package husbandry.
* New upstream release buildable with GCC 4.4 (Closes: #504849)
* Version number updated in debian/rules.
* debian/copyright refreshed to my latest exploration of the
machine-readable format.
* Added a BibTeX reference in debian/reference.
Modified: trunk/packages/ncbi-epcr/trunk/debian/changelog
===================================================================
--- trunk/packages/ncbi-epcr/trunk/debian/changelog 2009-07-01 05:34:31 UTC (rev 3576)
+++ trunk/packages/ncbi-epcr/trunk/debian/changelog 2009-07-02 00:35:43 UTC (rev 3577)
@@ -1,3 +1,13 @@
+epcr (2.3.12-1) unstable; urgency=low
+
+ * New upstream release buildable with GCC 4.4 (Closes: #504849)
+ * Version number updated in debian/rules.
+ * debian/copyright refreshed to my latest exploration of the
+ machine-readable format.
+ * Added a BibTeX reference in debian/reference.
+
+ -- Charles Plessy <plessy at debian.org> Thu, 02 Jul 2009 09:31:29 +0900
+
epcr (2.3.11-1) unstable; urgency=low
* New upstream release. When parsing commandline if -d was used before -w or
Modified: trunk/packages/ncbi-epcr/trunk/debian/copyright
===================================================================
--- trunk/packages/ncbi-epcr/trunk/debian/copyright 2009-07-01 05:34:31 UTC (rev 3576)
+++ trunk/packages/ncbi-epcr/trunk/debian/copyright 2009-07-02 00:35:43 UTC (rev 3577)
@@ -2,28 +2,28 @@
Name: e-PCR
Contact: Gregory D. Schuler <schuler at ncbi.nlm.nih.gov>
-Source: ftp://ftp.ncbi.nlm.nih.gov/pub/schuler/e-PCR/e-PCR-2.3.11-src.tar.gz
+Source: ftp://ftp.ncbi.nlm.nih.gov/pub/schuler/e-PCR/e-PCR-2.3.12-src.tar.gz
Licence: PD
- PUBLIC DOMAIN NOTICE
- National Center for Biotechnology Information
- .
- This software/database is a "United States Government Work" under the
- terms of the United States Copyright Act. It was written as part of
- the author's official duties as a United States Government employee and
- thus cannot be copyrighted. This software/database is freely available
- to the public for use. The National Library of Medicine and the U.S.
- Government have not placed any restriction on its use or reproduction.
- .
- Although all reasonable efforts have been taken to ensure the accuracy
- and reliability of the software and data, the NLM and the U.S.
- Government do not and cannot warrant the performance or results that
- may be obtained by using this software or data. The NLM and the U.S.
- Government disclaim all warranties, express or implied, including
- warranties of performance, merchantability or fitness for any particular
- purpose.
- .
- Please cite the author in any work or product based on this material.
+ PUBLIC DOMAIN NOTICE
+ National Center for Biotechnology Information
+
+ This software/database is a "United States Government Work" under the
+ terms of the United States Copyright Act. It was written as part of
+ the author's official duties as a United States Government employee and
+ thus cannot be copyrighted. This software/database is freely available
+ to the public for use. The National Library of Medicine and the U.S.
+ Government have not placed any restriction on its use or reproduction.
+
+ Although all reasonable efforts have been taken to ensure the accuracy
+ and reliability of the software and data, the NLM and the U.S.
+ Government do not and cannot warrant the performance or results that
+ may be obtained by using this software or data. The NLM and the U.S.
+ Government disclaim all warranties, express or implied, including
+ warranties of performance, merchantability or fitness for any particular
+ purpose.
+
+ Please cite the author in any work or product based on this material.
The lines below are about the license of the Debian packaging work:
@@ -41,43 +41,23 @@
Copyright: © 2003-2004 Steffen Moeller <moeller at debian.org>
© 2008 Andreas Tille <tille at debian.org>
License: GPL-2+
- debian/*.1: manual pages for e-PCR.
- Copyright © 2008 Steffen Moeller <moeller at debian.org> and
- Andreas Tille <tille at debian.org>
- .
- This program is free software; you can redistribute it and/or modify
- it under the terms of the GNU General Public License as published by
- the Free Software Foundation; either version 2 of the License, or
- (at your option) any later version.
- .
- This program is distributed in the hope that it will be useful,
- but WITHOUT ANY WARRANTY; without even the implied warranty of
- MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
- GNU General Public License for more details.
- .
- You should have received a copy of the GNU General Public License along
- with this program; if not, write to the Free Software Foundation, Inc.,
- 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
+ This program is free software; you can redistribute it and/or modify
+ it under the terms of the GNU General Public License as published by
+ the Free Software Foundation; either version 2 of the License, or
+ (at your option) any later version.
+
+ This program is distributed in the hope that it will be useful,
+ but WITHOUT ANY WARRANTY; without even the implied warranty of
+ MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ GNU General Public License for more details.
+
+ You should have received a copy of the GNU General Public License along
+ with this program; if not, write to the Free Software Foundation, Inc.,
+ 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
Files: debian/rules
Copyright: © 2008 Andreas Tille <tille at debian.org>
License: GPL-1+
- debian/rules: file to build the ncbi-epcr Debian package
- Copyright © 2008 Andreas Tille <tille at debian.org>
- .
- This program is free software; you can redistribute it and/or modify
- it under the terms of the GNU General Public License as published by
- the Free Software Foundation; either version 2 of the License, or
- (at your option) any later version.
- .
- This program is distributed in the hope that it will be useful,
- but WITHOUT ANY WARRANTY; without even the implied warranty of
- MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
- GNU General Public License for more details.
- .
- You should have received a copy of the GNU General Public License along
- with this program; if not, write to the Free Software Foundation, Inc.,
- 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
On Debian systems, you can find the full text of the latest
GNU General Public License in the file `/usr/share/common-licenses/GPL'
Added: trunk/packages/ncbi-epcr/trunk/debian/reference
===================================================================
--- trunk/packages/ncbi-epcr/trunk/debian/reference (rev 0)
+++ trunk/packages/ncbi-epcr/trunk/debian/reference 2009-07-02 00:35:43 UTC (rev 3577)
@@ -0,0 +1,12 @@
+ at article{Gregory D.Schuler05011997,
+author = {Schuler, Gregory D.},
+title={{Sequence Mapping by Electronic PCR}},
+journal = {Genome Research},
+volume = {7},
+number = {5},
+pages = {541-550},
+doi = {10.1101/gr.7.5.541},
+year = {1997},
+URL = {http://genome.cshlp.org/content/7/5/541.abstract},
+eprint = {http://genome.cshlp.org/content/7/5/541.full.pdf+html}
+}
Modified: trunk/packages/ncbi-epcr/trunk/debian/rules
===================================================================
--- trunk/packages/ncbi-epcr/trunk/debian/rules 2009-07-01 05:34:31 UTC (rev 3576)
+++ trunk/packages/ncbi-epcr/trunk/debian/rules 2009-07-02 00:35:43 UTC (rev 3577)
@@ -11,6 +11,6 @@
rm -f libepcr.a
rm -f e-PCR famap fahash re-PCR
-DEB_OPT_FLAG += -I. -g2 -DDEALLOCATE=0 `getconf LFS_CFLAGS` -DVERSION=\\\"2.3.10\\\" -DVER_MAJOR=2 -DVER_MINOR=3 -DVER_BUILD=10 -DSTANDALONE=1
+DEB_OPT_FLAG += -I. -g2 -DDEALLOCATE=0 `getconf LFS_CFLAGS` -DVERSION=\\\"2.3.12\\\" -DVER_MAJOR=2 -DVER_MINOR=3 -DVER_BUILD=12 -DSTANDALONE=1
LDFLAGS += `getconf LFS_LDFLAGS` `getconf LFS_LIBS` -L.
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