[med-svn] r3458 - trunk/packages/melting/trunk/debian
Charles Plessy
plessy at alioth.debian.org
Thu Jun 4 05:30:17 UTC 2009
Author: plessy
Date: 2009-06-04 05:30:16 +0000 (Thu, 04 Jun 2009)
New Revision: 3458
Removed:
trunk/packages/melting/trunk/debian/melting-gui.desktop
trunk/packages/melting/trunk/debian/tkmelting.1
trunk/packages/melting/trunk/debian/tkmelting.1.xml
Modified:
trunk/packages/melting/trunk/debian/changelog
trunk/packages/melting/trunk/debian/control
trunk/packages/melting/trunk/debian/melting-gui.manpages
trunk/packages/melting/trunk/debian/melting.doc-base
trunk/packages/melting/trunk/debian/melting.docs
trunk/packages/melting/trunk/debian/rules
Log:
Would be ready to upload, but Tkmelting did not work in my tests.
debian/tkmelting.1* and debian/melting-gui.desktop were adopted upstream and
deleted from the debian directory.
Modified: trunk/packages/melting/trunk/debian/changelog
===================================================================
--- trunk/packages/melting/trunk/debian/changelog 2009-06-03 12:35:49 UTC (rev 3457)
+++ trunk/packages/melting/trunk/debian/changelog 2009-06-04 05:30:16 UTC (rev 3458)
@@ -1,11 +1,11 @@
-melting (4.3-1) UNRELEASED; urgency=low
+melting (4.3b-1) UNRELEASED; urgency=low
- [ Charles Plessy ]
- The LaTeX source of the documentation disappeared. The package can not be
- uploaded as is.
+ Tkmelting did not work in my tests.
* New upstream release, with new options for Tris, potassium and magnesium
concentrations, as well as support for inosine bases.
+
+ [ Charles Plessy ]
* debian/control:
- Moved bibliographic reference from the long description to a BibTeX file
(debian/reference, installed in /usr/share/doc/melting/reference).
@@ -25,11 +25,13 @@
debian/patches/melting.1_escape.patch cosmetic deviations from Upstream.
* debian/copyright updated and converted to latest version of the
machine-readable format.
+ * debian/tkmelting.1* and debian/melting-gui.desktop were adopted upstream and
+ deleted from the debian directory.
[ David Paleino ]
* Removed myself from Uploaders
- -- David Paleino <d.paleino at gmail.com> Sat, 23 May 2009 14:46:07 +0200
+ -- Charles Plessy <plessy at debian.org> Thu, 04 Jun 2009 13:51:52 +0900
melting (4.2h-3) unstable; urgency=low
Modified: trunk/packages/melting/trunk/debian/control
===================================================================
--- trunk/packages/melting/trunk/debian/control 2009-06-03 12:35:49 UTC (rev 3457)
+++ trunk/packages/melting/trunk/debian/control 2009-06-04 05:30:16 UTC (rev 3458)
@@ -28,7 +28,7 @@
Package: melting-gui
Architecture: all
Depends: perl-tk, melting, ${misc:Depends}
-Description: compute the melting temperature of nucleic acid duplex
+Description: graphical interface to compute the melting temperature of nucleic acid duplex
This package provides a graphical user interface for the “melting”
program, which computes for a nucleic acid duplex the enthalpy, the entropy
and the melting temperature of the helix-coil transitions.
Deleted: trunk/packages/melting/trunk/debian/melting-gui.desktop
===================================================================
--- trunk/packages/melting/trunk/debian/melting-gui.desktop 2009-06-03 12:35:49 UTC (rev 3457)
+++ trunk/packages/melting/trunk/debian/melting-gui.desktop 2009-06-04 05:30:16 UTC (rev 3458)
@@ -1,16 +0,0 @@
-[Desktop Entry]
-Version=1.0
-Terminal=false
-Icon=tkmelting
-Exec=tkmelting
-Name=Melting
-GenericName="Oligonucleotide analyser"
-GenericName[en]="Oligonucleotide analyser"
-GenericName[fr]="Analyse d'oligonucléotides"
-GenericName[pt_BR]="Analisador de oligonucleotídeos"
-Comment="Computes the melting temperature for a nucleic acid duplex."
-Comment[en]="Computes the melting temperature for a nucleic acid duplex."
-Comment[fr]="Calcule la température de fusion d'une paire d'oligonucléotides."
-Comment[pt_BR]="Calcula a temperatura de fusão de um par de ácido nucléico"
-Type=Application
-Categories=Biology;Science;Education;
Modified: trunk/packages/melting/trunk/debian/melting-gui.manpages
===================================================================
--- trunk/packages/melting/trunk/debian/melting-gui.manpages 2009-06-03 12:35:49 UTC (rev 3457)
+++ trunk/packages/melting/trunk/debian/melting-gui.manpages 2009-06-04 05:30:16 UTC (rev 3458)
@@ -1 +1 @@
-debian/tkmelting.1
+DOC/tkmelting.1
Modified: trunk/packages/melting/trunk/debian/melting.doc-base
===================================================================
--- trunk/packages/melting/trunk/debian/melting.doc-base 2009-06-03 12:35:49 UTC (rev 3457)
+++ trunk/packages/melting/trunk/debian/melting.doc-base 2009-06-04 05:30:16 UTC (rev 3458)
@@ -10,5 +10,5 @@
Files: /usr/share/doc/melting/melting.pdf.gz
Format: HTML
-Index: /usr/share/doc/melting/melting/index.html
+Index: /usr/share/doc/melting/melting.html
Files: /usr/share/doc/melting/melting/*
Modified: trunk/packages/melting/trunk/debian/melting.docs
===================================================================
--- trunk/packages/melting/trunk/debian/melting.docs 2009-06-03 12:35:49 UTC (rev 3457)
+++ trunk/packages/melting/trunk/debian/melting.docs 2009-06-04 05:30:16 UTC (rev 3458)
@@ -1,3 +1,4 @@
DOC/melting
+DOC/melting.html
DOC/melting.pdf
README
Modified: trunk/packages/melting/trunk/debian/rules
===================================================================
--- trunk/packages/melting/trunk/debian/rules 2009-06-03 12:35:49 UTC (rev 3457)
+++ trunk/packages/melting/trunk/debian/rules 2009-06-04 05:30:16 UTC (rev 3458)
@@ -51,7 +51,7 @@
dh_install -i
install -D BIN/tkmelting.pl $(CURDIR)/debian/melting-gui/usr/bin/tkmelting
install -m 644 -D BIN/melting.hlp $(CURDIR)/debian/melting-gui/usr/share/melting/melting.hlp
- install -m 644 -D debian/melting-gui.desktop $(CURDIR)/debian/melting-gui/usr/share/applications/melting-gui.desktop
+ install -m 644 -D melting-gui.desktop $(CURDIR)/debian/melting-gui/usr/share/applications/melting-gui.desktop
install-arch:
dh_testdir
Deleted: trunk/packages/melting/trunk/debian/tkmelting.1
===================================================================
--- trunk/packages/melting/trunk/debian/tkmelting.1 2009-06-03 12:35:49 UTC (rev 3457)
+++ trunk/packages/melting/trunk/debian/tkmelting.1 2009-06-04 05:30:16 UTC (rev 3458)
@@ -1,55 +0,0 @@
-.\" Title: TKMELTING
-.\" Author: Nicolas Le Novère <lenov at ebi.ac.uk>
-.\" Generator: DocBook XSL Stylesheets v1.73.2 <http://docbook.sf.net/>
-.\" Date: 05/17/2009
-.\" Manual: Melting Manual
-.\" Source: tkmelting 0.005
-.\"
-.TH "TKMELTING" "1" "05/17/2009" "tkmelting 0.005" "Melting Manual"
-.\" disable hyphenation
-.nh
-.\" disable justification (adjust text to left margin only)
-.ad l
-.SH "NAME"
-tkmelting \- Tk interface to MELTING
-.SH "SYNOPSIS"
-.HP 10
-\fBtkmelting\fR
-.SH "DESCRIPTION"
-.PP
-\fBtkmelting\fR
-starts a graphical user interface to MELTING, a program to calculate for a DNA/DNA, DNA/RNA, and RNA/RNA duplex, the enthalpy, the entropy of the helix\-coil transition, and then its melting temperature\&.
-.SH "SEE ALSO"
-.PP
-\fBmelting\fR(1)
-.SH "AUTHORS"
-.PP
-\fBNicolas Le Novère\fR <\&lenov at ebi\&.ac\&.uk\&>
-.sp -1n
-.IP "" 4
-Wrote tkmelting
-.PP
-\fBMarine Dumousseau\fR <\&(marine at ebi\&.ac\&.uk\&>
-.sp -1n
-.IP "" 4
-Wrote tkmelting
-.PP
-\fBCharles Plessy\fR <\&plessy at debian\&.org\&>
-.sp -1n
-.IP "" 4
-Wrote and this manpage in DocBook XML for the Debian distribution\&.
-.SH "COPYRIGHT"
-Copyright \(co 1996, 1997, 1998, 1999, 2000, 2001, 2002, 2003, 2004, 2005, 2006, 2007, 2008, 2009 Nicolas le Novère, Marine Dumousseau
-.br
-Copyright \(co 2007, 2009 Charles Plessy
-.br
-.PP
-Tkmelting is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation; either version 2 of the License, or (at your option) any later version\&.
-.PP
-Tkmelting is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE\&. See the GNU General Public License for more details\&.
-.PP
-You should have received a copy of the GNU General Public License along with this program; if not, write to the Free Software Foundation, Inc\&., 59 Temple Place, Suite 330, Boston, MA 02111\-1307 USA
-.PP
-On Debian systems, you can find a copy of the GNU General Public License version 2 in
-\fI/usr/share/common\-licences/GPL\-2\fR\&. The manpage of tkmelting can be used under the same terms as tkmelting itself\&.
-.sp
Deleted: trunk/packages/melting/trunk/debian/tkmelting.1.xml
===================================================================
--- trunk/packages/melting/trunk/debian/tkmelting.1.xml 2009-06-03 12:35:49 UTC (rev 3457)
+++ trunk/packages/melting/trunk/debian/tkmelting.1.xml 2009-06-04 05:30:16 UTC (rev 3458)
@@ -1,145 +0,0 @@
-<?xml version='1.0' encoding='UTF-8'?>
-<?xml-stylesheet type="text/xsl"
- href="http://docbook.sourceforge.net/release/xsl/current/manpages/docbook.xsl"?>
-<!DOCTYPE refentry PUBLIC "-//OASIS//DTD DocBook XML V4.5//EN"
- "http://www.oasis-open.org/docbook/xml/4.5/docbookx.dtd" [
-
-<!-- Process this file with an XSLT processor, e.g. xsltproc: -->
-<!-- `xsltproc \
- -''-nonet \
- -''-param man.charmap.use.subset "0" \
- -''-param make.year.ranges "1" \
- -''-param make.single.year.ranges "1" \
- manpage.xml' -->
-
- <!ENTITY dhfirstname "Charles">
- <!ENTITY dhsurname "Plessy">
- <!ENTITY dhemail "plessy at debian.org">
- <!ENTITY dhusername "&dhfirstname; &dhsurname;">
- <!ENTITY dhrelease "0.005">
- <!ENTITY dhtitle "Melting Manual">
- <!ENTITY dhucpackage "TKMELTING">
- <!ENTITY dhpackage "tkmelting">
- <!ENTITY dhproduct "Melting">
- <!ENTITY dhsection "1">
-
-]>
-
-<refentry>
- <refentryinfo>
- <title>&dhtitle;</title>
- <productname>&dhpackage;</productname>
- <releaseinfo role="version">&dhrelease;</releaseinfo>
- <authorgroup>
- <author>
- <firstname>Nicolas</firstname>
- <surname>Le Novère</surname>
- <contrib>Wrote tkmelting</contrib>
- <address>
- <affiliation>
- <orgname>EMBL-EBI</orgname>
- </affiliation>
- <street>Wellcome-Trust Genome Campus Hinxton</street>
- <city>Cambridge</city>
- <postcode>CB10 1SD</postcode>
- <country>UK</country>
- <email>lenov at ebi.ac.uk</email>
- </address>
- </author>
-
- <author>
- <firstname>Marine</firstname>
- <surname>Dumousseau</surname>
- <contrib>Wrote tkmelting</contrib>
- <address>
- <affiliation>
- <orgname>EMBL-EBI</orgname>
- </affiliation>
- <street>Wellcome-Trust Genome Campus Hinxton</street>
- <city>Cambridge</city>
- <postcode>CB10 1SD</postcode>
- <country>UK</country>
- <email>(marine at ebi.ac.uk</email>
- </address>
- </author>
-
- <author>
- <firstname>&dhfirstname;</firstname>
- <surname>&dhsurname;</surname>
- <contrib>Wrote and this manpage in DocBook XML for the Debian distribution.</contrib>
- <address>
- <email>&dhemail;</email>
- </address>
- </author>
- </authorgroup>
- <copyright>
- <year>1996</year>
- <year>1997</year>
- <year>1998</year>
- <year>1999</year>
- <year>2000</year>
- <year>2001</year>
- <year>2002</year>
- <year>2003</year>
- <year>2004</year>
- <year>2005</year>
- <year>2006</year>
- <year>2007</year>
- <year>2008</year>
- <year>2009</year>
- <holder>Nicolas le Novère</holder>
- <holder>Marine Dumousseau</holder>
- </copyright>
- <copyright>
- <year>2007</year>
- <year>2009</year>
- <holder>&dhusername;</holder>
- </copyright>
- <legalnotice>
- <para>
- Tkmelting is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation; either version 2 of the License, or (at your option) any later version.
- </para>
-
- <para>
- Tkmelting is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details.
- </para>
-
- <para>
- You should have received a copy of the GNU General Public License along with this program; if not, write to the Free Software Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
- </para>
-
- <para>
- On Debian systems, you can find a copy of the GNU General Public License version 2 in <filename>/usr/share/common-licences/GPL-2</filename>. The manpage of tkmelting can be used under the same terms as tkmelting itself.
- </para>
- </legalnotice>
- </refentryinfo>
-
- <refmeta>
- <refentrytitle>&dhucpackage;</refentrytitle>
- <manvolnum>&dhsection;</manvolnum>
- </refmeta>
-
- <refnamediv>
- <refname>&dhpackage;</refname>
- <refpurpose>Tk interface to MELTING</refpurpose>
- </refnamediv>
-
- <refsynopsisdiv>
- <cmdsynopsis>
- <command>&dhpackage;</command>
- </cmdsynopsis>
- </refsynopsisdiv>
- <refsect1 id="description">
- <title>DESCRIPTION</title>
- <para><command>&dhpackage;</command> starts a graphical user interface to MELTING, a program to calculate for a DNA/DNA, DNA/RNA, and RNA/RNA duplex, the enthalpy, the entropy of the helix-coil transition, and then its melting temperature.</para>
- </refsect1>
-
- <refsect1>
- <title>SEE ALSO</title>
- <para><citerefentry>
- <refentrytitle>melting</refentrytitle>
- <manvolnum>1</manvolnum>
- </citerefentry>
- </para>
- </refsect1>
-</refentry>
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