[med-svn] r3527 - trunk/packages/ssake/trunk/debian

[Charles Plessy]

Author: plessy
Date: 2009-06-23 05:20:43 +0000 (Tue, 23 Jun 2009)
New Revision: 3527

Modified:
   trunk/packages/ssake/trunk/debian/changelog
   trunk/packages/ssake/trunk/debian/control
   trunk/packages/ssake/trunk/debian/copyright
Log:
New upstream release.

   * debian/control:
     - Incremented Standards-Version to indicate conformance with Policy 3.8.2.
       (No changes needed.)
     - Using the Unicode ?\226?\128?\152prime?\226?\128?\153 character for the 3?\226?\128?\178 direction (cosmetic).
   * Simplified debian/copyright according to latest discussions about the
     machine-readable format.


Modified: trunk/packages/ssake/trunk/debian/changelog
===================================================================
--- trunk/packages/ssake/trunk/debian/changelog	2009-06-22 18:25:50 UTC (rev 3526)
+++ trunk/packages/ssake/trunk/debian/changelog	2009-06-23 05:20:43 UTC (rev 3527)
@@ -1,3 +1,21 @@
+ssake (3.4-1) unstable; urgency=low
+
+  * New upstream release.
+     - Fixed a bug in PET routine.  User can now track read position and
+       individual base coverage for reads *fully embedded* within contigs,
+       using the -c option.
+     - Version 3.4 exploits paired-end reads to explore possible contig merges
+       within scaffolds (Consecutive contigs >= -z bases must overlap by -m
+       bases or more).
+  * debian/control:
+    - Incremented Standards-Version to indicate conformance with Policy 3.8.2.
+      (No changes needed.)
+    - Using the Unicode ‘prime’ character for the 3′ direction (cosmetic).
+  * Simplified debian/copyright according to latest discussions about the
+    machine-readable format.
+
+ -- Charles Plessy <plessy at debian.org>  Tue, 23 Jun 2009 13:58:49 +0900
+
 ssake (3.2.1-2) unstable; urgency=low
 
   * debian/control:

Modified: trunk/packages/ssake/trunk/debian/control
===================================================================
--- trunk/packages/ssake/trunk/debian/control	2009-06-22 18:25:50 UTC (rev 3526)
+++ trunk/packages/ssake/trunk/debian/control	2009-06-23 05:20:43 UTC (rev 3527)
@@ -6,7 +6,7 @@
 Uploaders: Andreas Tille <tille at debian.org>,
  Charles Plessy <plessy at debian.org>
 Build-Depends: cdbs, debhelper (>= 7)
-Standards-Version: 3.8.0
+Standards-Version: 3.8.2
 Homepage: http://www.bcgsc.ca/platform/bioinfo/software/ssake
 Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/ssake/trunk/?rev=0&sc=0
 Vcs-Svn: svn://svn.debian.org/svn/debian-med/trunk/packages/ssake/trunk/
@@ -16,10 +16,10 @@
 Depends: ${misc:Depends}, ${perl:Depends}, python
 Suggests: ssake-examples
 Description: genomics application for assembling millions of very short DNA sequences
- The Short Sequence Assembly by K-mer search and 3' read Extension
+ The Short Sequence Assembly by K-mer search and 3′ read Extension
  (SSAKE) is a genomics application for aggressively assembling
  millions of short nucleotide sequences by progressively searching for
- perfect 3'-most k-mers using a DNA prefix tree. SSAKE is designed to
+ perfect 3′-most k-mers using a DNA prefix tree. SSAKE is designed to
  help leverage the information from short sequences reads by
  stringently clustering them into contigs that can be used to
  characterize novel sequencing targets.

Modified: trunk/packages/ssake/trunk/debian/copyright
===================================================================
--- trunk/packages/ssake/trunk/debian/copyright	2009-06-22 18:25:50 UTC (rev 3526)
+++ trunk/packages/ssake/trunk/debian/copyright	2009-06-23 05:20:43 UTC (rev 3527)
@@ -1,12 +1,11 @@
-Format-Specification: http://wiki.debian.org/Proposals/CopyrightFormat
-Upstream-Author: Rene Warren <rwarren at bcgsc.ca>
-Packaged-By: Andreas Tille <tille at debian.org>
-Packaged-Date: Mon, 24 Nov 2008 13:12:38 +0100
-Upstream-Source: http://www.bcgsc.ca/platform/bioinfo/software/ssake/releases/3.2.1/ssake_v3-2-1-tar.gz
+Machine-readable license summary, see ‘http://dep.debian.net/deps/dep5/’.
 
-Files: *
+Name: SSAKE
+Contact: Rene Warren <rwarren at bcgsc.ca>
+Source: http://www.bcgsc.ca/platform/bioinfo/software/ssake/releases/3.4/ssake_v3-4-tar.gz
+
+Copyright: © 2006-2008 Rene Warren <rwarren at bcgsc.ca>
 License: GPL-2+
-Copyright: © 2006-2008 Rene Warren <rwarren at bcgsc.ca>
  This program is free software: you can redistribute it and/or modify
  it under the terms of the GNU General Public License as published by
  the Free Software Foundation, either version 2 of the License, or
@@ -19,11 +18,12 @@
  .
  You should have received a copy of the GNU General Public License
  along with this program.  If not, see <http://www.gnu.org/licenses/>.
-X-Comment: On Debian systems, the complete text of the GNU Public
- License can be found in `/usr/share/common-licenses/GPL-2'.
 
+On Debian systems, the complete text of the GNU Public License version 2 can be
+found in ‘/usr/share/common-licenses/GPL-2’.
+
 Files: debian/*
 Copyright: © 2008 Andreas Tille <tille at debian.org>
            © 2009 Charles Plessy <plessy at debian.org>
-License: Same as Ssake itelf
+License: Same as SSAKE itelf
  (see above)