[med-svn] r3551 - trunk/packages/autodocksuite/trunk/debian

[Nelson A. de Oliveira]

Author: naoliv
Date: 2009-06-25 18:16:34 +0000 (Thu, 25 Jun 2009)
New Revision: 3551

Modified:
   trunk/packages/autodocksuite/trunk/debian/autodock4.1
   trunk/packages/autodocksuite/trunk/debian/autogrid4.1
   trunk/packages/autodocksuite/trunk/debian/changelog
   trunk/packages/autodocksuite/trunk/debian/control
   trunk/packages/autodocksuite/trunk/debian/copyright
Log:
- Fix #534267 and #534601
- Add watch file
- Fix lintian's copyright-with-old-dh-make-debian-copyright and hyphen-used-as-minus-sign


Modified: trunk/packages/autodocksuite/trunk/debian/autodock4.1
===================================================================
--- trunk/packages/autodocksuite/trunk/debian/autodock4.1	2009-06-25 17:43:44 UTC (rev 3550)
+++ trunk/packages/autodocksuite/trunk/debian/autodock4.1	2009-06-25 18:16:34 UTC (rev 3551)
@@ -64,7 +64,7 @@
 .br
 gunzip *.map.gz
 .br
-autodock4 -p 1pgp.dpf -l /tmp/1pgp.dlg
+autodock4 \-p 1pgp.dpf \-l /tmp/1pgp.dlg
 
 The interpretation of results is aided by the AutoDockTools suite. Please also inspect the tutorials offered online. 
 

Modified: trunk/packages/autodocksuite/trunk/debian/autogrid4.1
===================================================================
--- trunk/packages/autodocksuite/trunk/debian/autogrid4.1	2009-06-25 17:43:44 UTC (rev 3550)
+++ trunk/packages/autodocksuite/trunk/debian/autogrid4.1	2009-06-25 18:16:34 UTC (rev 3551)
@@ -17,7 +17,7 @@
 .SH SYNOPSIS
 .B autogrid4
 .RI [ options ]
--p
+\-p
 .RI gridparameterfile
 .SH DESCRIPTION
 .B AutoGrid
@@ -74,12 +74,12 @@
 .br
 $ cd /tmp
 .br
-$ ln -s $D/AD4_parameters.dat .
+$ ln \-s $D/AD4_parameters.dat .
 .br
-$ gunzip -c $D/hsg1_sm.pdbqt.gz > hsg1_sm.pdbqt
+$ gunzip \-c $D/hsg1_sm.pdbqt.gz > hsg1_sm.pdbqt
 .br
 .nh
-$ autogrid4 -p $D/hsg1_no_receptor_types.gpf -l hsg1_no_receptor_types.glg
+$ autogrid4 \-p $D/hsg1_no_receptor_types.gpf \-l hsg1_no_receptor_types.glg
 .ad b
 .TP
 This command prepares grid map files for each of the AutoDock atom types specified in the grid parameter file (in this case: hsg1_sm.A.map, hsg1_sm.C.map, hsg1_sm.d.map, hsg1_sm.e.map, hsg1_sm.HD.map, hsg1_sm.NA.map, hsg1_sm.N.map, hsg1_sm.OA.map), the AVS field file (hsg1_sm.maps.fld) and hsg1_sm.maps.xyz. To perform the cocking calculation, AutoDock should be executed, though it demands a separate docking parameter file (with extension .dpf).  The 'DPF' refers to the grid map files that are necessary to the docking and allows the setting of other important parameters, such as the search method and how many dockings to perform.

Modified: trunk/packages/autodocksuite/trunk/debian/changelog
===================================================================
--- trunk/packages/autodocksuite/trunk/debian/changelog	2009-06-25 17:43:44 UTC (rev 3550)
+++ trunk/packages/autodocksuite/trunk/debian/changelog	2009-06-25 18:16:34 UTC (rev 3551)
@@ -1,3 +1,13 @@
+autodocksuite (4.2.1+rc1-2) unstable; urgency=low
+
+  * Fix FTBFS (Closes: #534601)
+    - debian/control: add automake and csh in Build-Depends
+  # Downgraded autodocktools from Recommends to Suggests (Closes: #534267)
+  * Add watch file
+  * Include myself in Uploaders.
+
+ -- Nelson A. de Oliveira <naoliv at debian.org>  Thu, 25 Jun 2009 14:43:54 -0300
+
 autodocksuite (4.2.1+rc1-1) unstable; urgency=low
 
   * new upstream release

Modified: trunk/packages/autodocksuite/trunk/debian/control
===================================================================
--- trunk/packages/autodocksuite/trunk/debian/control	2009-06-25 17:43:44 UTC (rev 3550)
+++ trunk/packages/autodocksuite/trunk/debian/control	2009-06-25 18:16:34 UTC (rev 3551)
@@ -2,8 +2,8 @@
 Section: science
 Priority: optional
 Maintainer: Debian-Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-Uploaders: Steffen Moeller <moeller at debian.org>, Charles Plessy <plessy at debian.org>
-Build-Depends: debhelper (>= 7), quilt
+Uploaders: Steffen Moeller <moeller at debian.org>, Charles Plessy <plessy at debian.org>, Nelson A. de Oliveira <naoliv at debian.org>
+Build-Depends: debhelper (>= 7), quilt, automake, csh
 Standards-Version: 3.8.2
 Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/autodocksuite/trunk/?rev=0&sc=0
 Vcs-Svn: svn://svn.debian.org/svn/debian-med/trunk/packages/autodocksuite/trunk/
@@ -27,8 +27,7 @@
 Package: autogrid
 Architecture: any
 Depends: ${shlibs:Depends}, ${misc:Depends}
-Recommends: autodocktools
-Suggests: autodock
+Suggests: autodock, autodocktools
 Description: pre-calculate binding of ligands to their receptor
  The AutoDockSuite addresses the molecular analysis of the docking of
  a smaller chemical compounds to their receptors of known three-dimensional
@@ -42,11 +41,11 @@
 Package: autodock-test
 Architecture: all
 Suggests: autodock
-Description: Test files for AutoDock
+Description: test files for AutoDock
  This package contain the test files for the AutoDock program.
 
 Package: autogrid-test
 Architecture: all
 Suggests: autogrid
-Description: Test files for AutoGrid
+Description: test files for AutoGrid
  This package contain the test files for the AutoGrid program.

Modified: trunk/packages/autodocksuite/trunk/debian/copyright
===================================================================
--- trunk/packages/autodocksuite/trunk/debian/copyright	2009-06-25 17:43:44 UTC (rev 3550)
+++ trunk/packages/autodocksuite/trunk/debian/copyright	2009-06-25 18:16:34 UTC (rev 3551)
@@ -23,7 +23,7 @@
 
 Copyright: 
 
-    Copyright (C)  1989-2008, All Rights Reserved. 
+    Copyright © 1989-2008, All Rights Reserved. 
         Garrett M. Morris <garrett at scripps.edu>
 	David S. Goodsell <goodsell at scripps.edu>
 	Scott Halliday
@@ -58,5 +58,5 @@
 On Debian systems, the complete text of the GNU General
 Public License can be found in `/usr/share/common-licenses/GPL'.
 
-The Debian packaging is (C) 2007, Steffen Moeller <moeller at debian.org> and
+The Debian packaging is © 2007, Steffen Moeller <moeller at debian.org> and
 is licensed under the GPL, see above.