[med-svn] r3168 - trunk/packages/last-align/trunk/debian

[plessy at alioth.debian.org]

Author: plessy
Date: 2009-03-10 11:12:29 +0000 (Tue, 10 Mar 2009)
New Revision: 3168

Modified:
   trunk/packages/last-align/trunk/debian/changelog
   trunk/packages/last-align/trunk/debian/control
   trunk/packages/last-align/trunk/debian/copyright
Log:
New upstream release.


Modified: trunk/packages/last-align/trunk/debian/changelog
===================================================================
--- trunk/packages/last-align/trunk/debian/changelog	2009-03-10 07:24:16 UTC (rev 3167)
+++ trunk/packages/last-align/trunk/debian/changelog	2009-03-10 11:12:29 UTC (rev 3168)
@@ -1,3 +1,15 @@
+last-align (42-1) unstable; urgency=low
+
+  * New upstream release:
+    - Corrects an overflow error that made lastal discard some gapped
+      alignments.
+    - Allows lastal options to be set in the score-matrix file.
+  * debian/copyright refreshed and points directly to GPLv3.
+  * Corrected the description in debian/control to not use
+    the first person.
+
+ -- Charles Plessy <plessy at debian.org>  Tue, 10 Mar 2009 19:46:32 +0900
+
 last-align (39-1) unstable; urgency=low
 
   * New upstream release.

Modified: trunk/packages/last-align/trunk/debian/control
===================================================================
--- trunk/packages/last-align/trunk/debian/control	2009-03-10 07:24:16 UTC (rev 3167)
+++ trunk/packages/last-align/trunk/debian/control	2009-03-10 11:12:29 UTC (rev 3168)
@@ -24,7 +24,7 @@
  .
  The main technical innovation is that LAST finds initial matches based on
  their multiplicity, instead of using a fixed size (e.g. BLAST uses 11-mers).
- This allows us to map tags to genomes without repeat-masking, without becoming
+ This allows to map tags to genomes without repeat-masking, without becoming
  overwhelmed by repetitive hits. To find these variable-sized matches, it uses
  a suffix array (inspired by Vmatch). To achieve high sensitivity, it uses a
  discontiguous suffix array, analogous to spaced seeds. 

Modified: trunk/packages/last-align/trunk/debian/copyright
===================================================================
--- trunk/packages/last-align/trunk/debian/copyright	2009-03-10 07:24:16 UTC (rev 3167)
+++ trunk/packages/last-align/trunk/debian/copyright	2009-03-10 11:12:29 UTC (rev 3168)
@@ -1,6 +1,6 @@
 Format-Specification: http://wiki.debian.org/Proposals/CopyrightFormat
 Upstream-Author: Martin C. Frith, Michiaki Hamada and Paul B. Horton <last at cbrc.jp>
-Upstream-Source: http://last.cbrc.jp/archive/last-39.zip
+Upstream-Source: http://last.cbrc.jp/archive/last-42.zip
 
 Files: *
 Copyright: © 2008–2009 Martin C. Frith, Michiaki Hamada and Paul B. Horton <last at cbrc.jp>
@@ -18,7 +18,7 @@
  You should have received a copy of the GNU General Public License
  along with this program.  If not, see <http://www.gnu.org/licenses/>.
 X-Comment: On Debian systems the full text of the GNU General Public License
- can be found in the `/usr/share/common-licenses/GPL' file.
+ can be found in the `/usr/share/common-licenses/GPL-3' file.
 
 Files: CA_code/*
 Copyright: not copyrighted