[med-svn] r3249 - trunk/packages/bioperl-run/trunk/debian

plessy at alioth.debian.org plessy at alioth.debian.org
Tue Mar 31 11:30:17 UTC 2009


Author: plessy
Date: 2009-03-31 11:30:17 +0000 (Tue, 31 Mar 2009)
New Revision: 3249

Removed:
   trunk/packages/bioperl-run/trunk/debian/patches/
Modified:
   trunk/packages/bioperl-run/trunk/debian/changelog
   trunk/packages/bioperl-run/trunk/debian/control
   trunk/packages/bioperl-run/trunk/debian/copyright
   trunk/packages/bioperl-run/trunk/debian/rules
   trunk/packages/bioperl-run/trunk/debian/watch
Log:
New upstream release.

 * debian/rules:
   - Disabled installation of examples (removed upstream).
   - Removed the correction of file permission of Pise documentation
     (removed upstream).
   - Replaced `dh_clean -k` by dephelper 7's `dh_prep`.
   - Removed patching facilities (no patches anymore).
 * debian/copyright:
   - Removed vanity lines about debianization.
   - Incremented years to 2009.
   - Updated to latest version of the machine-readable format.
 * debian/control:
   - Incremented Standards-Version to reflect conformance on new Policy
     (no changes needed).
   - Removed build-dependancy on quilt (no patches anymore).


Modified: trunk/packages/bioperl-run/trunk/debian/changelog
===================================================================
--- trunk/packages/bioperl-run/trunk/debian/changelog	2009-03-31 09:45:55 UTC (rev 3248)
+++ trunk/packages/bioperl-run/trunk/debian/changelog	2009-03-31 11:30:17 UTC (rev 3249)
@@ -1,12 +1,25 @@
-bioperl-run (1.5.9.1-1) UNRELEASED; urgency=low
+bioperl-run (1.6.1-1) unstable; urgency=low
 
   * New upstream release.
   * debian/patches/10-wrong-path-for-interpreter.patch: removed
     (fixed upstream).
   * debian/watch updated (bioperl -> BioPerl).
-  * debian/rules: disabled installation of examples (removed Upstream).
+  * debian/rules:
+    - Disabled installation of examples (removed upstream).
+    - Removed the correction of file permission of Pise documentation
+      (removed upstream).
+    - Replaced `dh_clean -k` by dephelper 7's `dh_prep`.
+    - Removed patching facilities (no patches anymore).
+  * debian/copyright:
+    - Removed vanity lines about debianization.
+    - Incremented years to 2009.
+    - Updated to latest version of the machine-readable format.
+  * debian/control:
+    - Incremented Standards-Version to reflect conformance on new Policy
+      (no changes needed).
+    - Removed build-dependancy on quilt (no patches anymore).
 
- -- Charles Plessy <plessy at debian.org>  Fri, 14 Nov 2008 13:13:47 +0900
+ -- Charles Plessy <plessy at debian.org>  Tue, 31 Mar 2009 20:29:19 +0900
 
 bioperl-run (1.5.2.100-1) unstable; urgency=low
 

Modified: trunk/packages/bioperl-run/trunk/debian/control
===================================================================
--- trunk/packages/bioperl-run/trunk/debian/control	2009-03-31 09:45:55 UTC (rev 3248)
+++ trunk/packages/bioperl-run/trunk/debian/control	2009-03-31 11:30:17 UTC (rev 3249)
@@ -1,12 +1,12 @@
 Source: bioperl-run
 Section: science
 Priority: optional
-Build-Depends: debhelper (>= 7), quilt, libmodule-build-perl
+Build-Depends: debhelper (>= 7), libmodule-build-perl
 Build-Depends-Indep: perl (>= 5.6.1), bioperl
 Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
 DM-Upload-Allowed: yes
 Uploaders: Charles Plessy <plessy at debian.org>
-Standards-Version: 3.8.0
+Standards-Version: 3.8.1
 Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/bioperl-run/trunk/?rev=0&sc=0
 Vcs-Svn: svn://svn.debian.org/svn/debian-med/trunk/packages/bioperl-run/trunk/
 Homepage: http://www.bioperl.org/wiki/Run_package

Modified: trunk/packages/bioperl-run/trunk/debian/copyright
===================================================================
--- trunk/packages/bioperl-run/trunk/debian/copyright	2009-03-31 09:45:55 UTC (rev 3248)
+++ trunk/packages/bioperl-run/trunk/debian/copyright	2009-03-31 11:30:17 UTC (rev 3249)
@@ -1,12 +1,8 @@
-Format-Specification: http://wiki.debian.org/Proposals/CopyrightFormat?action=recall&rev=311
-Upstream-Name: bioperl-run
-Upstream-Maintainer: Bioperl Team <bioperl-l at bioperl.org>
-Upstream-Source: http://bioperl.org/DIST/bioperl-run-1.5.2_100.tar.gz
-X-Packaged-By: Charles Plessy <plessy at debian.org>
-X-Packaged-Date: Sun, 09 Nov 2008 22:03:31 +0900
+Name: BioPerl-run
+Maintainer: Bioperl Team <bioperl-l at bioperl.org>
+Source: http://www.bioperl.org/DIST/BioPerl-run-1.6.1.tar.gz
 
-Files: *
-Copyright: © 1997-2006 Bioperl Team <bioperl-l at bioperl.org>
+Copyright: 1997-2009 Bioperl Team <bioperl-l at bioperl.org>
  Sendu Bala <bix at sendu.me.uk>
  Jer-Ming Chia <giscjm at nus.edu.sg>
  Rob Edwards <redwards at utmem.edu>
@@ -30,7 +26,7 @@
  Albert Vilella <avilella at gmail.com>
  Tiequan Zhang <tqzhang1973 at yahoo.com>
  Juguang Xiao <juguang at tll.org.sg>
-License: Artistic | GPL-1+
+License: Perl
  Everyone can use it! We don't care if you are academic, corporate, or
  government. BioPerl is licensed under the same terms as Perl itself, which
  means it is dually-licensed under either the Artistic or GPL licenses. The Perl
@@ -56,8 +52,9 @@
   * If you are an academic and you use the software, please cite the article.
     See the BioPerl publications for a list of papers which describe components in
     the toolkit. 
-X-Comment: see http://www.bioperl.org/wiki/Licensing_BioPerl
-X-Comment: Perl license
+Comment: see http://www.bioperl.org/wiki/Licensing_BioPerl
+
+License: Perl
  This program is free software; you can redistribute it and/or modify
  it under the terms of either:
  .
@@ -66,11 +63,11 @@
     version, or
  .
  b) the "Artistic License" which comes with Perl.
-X-Comment: On Debian systems, the complete text of the Artistic License can be
+Comment: On Debian systems, the complete text of the Artistic License can be
  found in `/usr/share/common-licenses/Artistic', and the complete text of the
  GNU General Public License can be found in `/usr/share/common-licenses/GPL'.
 
 Files: debian/*
-Copyright: © 2008 Charles Plessy <plessy at debian.org>
+Copyright: 2009 Charles Plessy <plessy at debian.org>
 License: Same as BioPerl itself
  (see above)

Modified: trunk/packages/bioperl-run/trunk/debian/rules
===================================================================
--- trunk/packages/bioperl-run/trunk/debian/rules	2009-03-31 09:45:55 UTC (rev 3248)
+++ trunk/packages/bioperl-run/trunk/debian/rules	2009-03-31 11:30:17 UTC (rev 3249)
@@ -10,8 +10,6 @@
 # Uncomment this to turn on verbose mode.
 #export DH_VERBOSE=1
 
-include /usr/share/quilt/quilt.make
-
 # If set to a true value then MakeMaker's prompt function will
 # always return the default without waiting for user input.
 export PERL_MM_USE_DEFAULT=1
@@ -20,7 +18,7 @@
 PACKAGE = $(shell dh_listpackages)
 TMP     = $(CURDIR)/debian/$(PACKAGE)
 
-build: patch build-stamp
+build: build-stamp
 build-stamp:
 	dh_testdir
 	# Add commands to compile the package here
@@ -30,7 +28,7 @@
 	# $(PERL) Build test
 	touch $@
 
-clean: unpatch
+clean: 
 	dh_testdir
 	dh_testroot
 	dh_clean build-stamp install-stamp
@@ -41,7 +39,7 @@
 install-stamp: build-stamp
 	dh_testdir
 	dh_testroot
-	dh_clean -k
+	dh_prep
 	# Add commands to install the package into $(TMP) here
 	$(PERL) Build install destdir=$(TMP) create_packlist=0
 	# prename is the rename utility written in perl usually available as /usr/bin/rename in Debian.
@@ -57,7 +55,6 @@
 	dh_testroot
 	dh_installdocs
 #	dh_installexamples examples/*
-	chmod 644 debian/bioperl-run/usr/share/doc/bioperl-run/examples/pise/*
 	dh_installchangelogs Changes
 	dh_perl
 	dh_compress

Modified: trunk/packages/bioperl-run/trunk/debian/watch
===================================================================
--- trunk/packages/bioperl-run/trunk/debian/watch	2009-03-31 09:45:55 UTC (rev 3248)
+++ trunk/packages/bioperl-run/trunk/debian/watch	2009-03-31 11:30:17 UTC (rev 3249)
@@ -1,3 +1,3 @@
 version=3
 #http://search.cpan.org/dist/bioperl-run/   .*/bioperl-run-v?(\d[\d_.-]+)\.(?:tar(?:\.gz|\.bz2)?|tgz|zip)$
-http://www.bioperl.org/DIST/BioPerl-run-([\d\.]+)_(\d*)\.tar\.gz
+http://www.bioperl.org/DIST/BioPerl-run-([\d\._]+)\.tar\.gz




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