[med-svn] r3384 - trunk/packages/seaview/trunk/debian

Charles Plessy plessy at alioth.debian.org
Sun May 17 05:36:26 UTC 2009 

Author: plessy
Date: 2009-05-17 05:36:26 +0000 (Sun, 17 May 2009)
New Revision: 3384

Modified:
   trunk/packages/seaview/trunk/debian/changelog
   trunk/packages/seaview/trunk/debian/control
   trunk/packages/seaview/trunk/debian/copyright
   trunk/packages/seaview/trunk/debian/seaview.doc-base.help
Log:
Spellchecked changelog, tidied copyright file, fixed packaging bugs and?\226?\128?\166 found non-free files :(

Please do not upload this package until the issue is solved.


Modified: trunk/packages/seaview/trunk/debian/changelog
===================================================================
--- trunk/packages/seaview/trunk/debian/changelog	2009-05-17 00:19:41 UTC (rev 3383)
+++ trunk/packages/seaview/trunk/debian/changelog	2009-05-17 05:36:26 UTC (rev 3384)
@@ -1,10 +1,13 @@
 seaview (1:4.0-1) UNRELEASED; urgency=low
 
+  DO NOT UPLOAD: contains non-free files: csrc/dnapars.c and csrc/protpars.c
+
   * New upstream version that computes and draws parsimony, distance and PhyML
     phylogenetic trees.
   * debian/control:
+    - Build-Depends on libxft-dev and libxext-dev.
     - Recommends phyml and muscle.
-    - Dropped dependancy on xterm.
+    - Dropped dependency on xterm.
     - checked package conformance with Policy 3.8.1.
     - Updated description and removed reference from it.
     - Dropped build dependency on quilt. 
@@ -20,7 +23,7 @@
     - Indicate the location of the help file with:
       -DHELPFILENAME=\\\"/usr/share/doc/seaview/seaview.html\\\"
     - Uses `dh clean' and $(RM) macro in the clean target.
-    - Uses `dh binary-arch` in the binary-arch targed (created debian/docs,
+    - Uses `dh binary-arch` in the binary-arch target (created debian/docs,
       debian/seaview.examples, and debian/manpages).
     - Removed protein.mase from examples (removed upstream).
     - Removed patching facilities (no patches to apply anymore).
@@ -31,7 +34,7 @@
   * Updated the manpage (debian/seaview.1*).
   * Registered the new help file with doc-base (debian/seaview.doc-base.help).
 
- -- Charles Plessy <plessy at debian.org>  Mon, 16 Mar 2009 13:18:29 +0900
+ -- Charles Plessy <plessy at debian.org>  Sun, 17 May 2009 09:22:35 +0900
 
 seaview (1:3.2-1) unstable; urgency=low
 
@@ -47,7 +50,7 @@
   * debian/seaview.1*: added year 2008 to copyright statements.
   * Updated my email address.
   * debian/control, debian/compat: using Debhelper 7.
-  * debian/control: added build-dependancy on libpng12-dev and zlib1g-dev.
+  * debian/control: added build-dependency on libpng12-dev and zlib1g-dev.
   * Experimental handling of bibliographic references:
     - debian/references contains a BibTeX-formatted reference.
     - debian/seaview.doc-base.references registers it for Doc-base
@@ -58,7 +61,7 @@
 seaview (1:2.4-1) unstable; urgency=low
 
   * New upstream version:
-    - Version 2.3: corrrected bug if adding/deleting/moving sequences when in
+    - Version 2.3: corrected bug if adding/deleting/moving sequences when in
       'view as proteins' mode.
     - Version 2.4: PHYLIP format: user can customize the max length of names.
   * debian/control:
@@ -115,9 +118,9 @@
     to use the MergeWithUpstream option.
   * Moved examples to debian/examples.
   * Using 'quilt' as a patch management system instead of 'dpatch'.
-  * Managing all the changes to the sources whith quilt.
+  * Managing all the changes to the sources with quilt.
   * Adding $(misc-Depends) in debian/control.
-  * Debian Menu transtion: moving entry to Applications/Science/Biology.
+  * Debian Menu transition: moving entry to Applications/Science/Biology.
   * Manpage: automatic date update; upgrading revision number.
   * Adding bibliographic reference to debian/copyright and debian/control.
   * Dropping 'config.h' patch from .diff.gz.
@@ -155,7 +158,7 @@
   * Uses muscle instead of clustalw, therefore moving to main (Closes: #357587)
   * Update debian/copyright: the current licence of seaview is GPL (Closes: #357581)
   * Conforms to Standards version 3.7.2 and debhelper compatibility level 5.
-  * Collective maintainance: Debian-Med Packaging Team is the new Maintainer.
+  * Collective maintenance: Debian-Med Packaging Team is the new Maintainer.
   * Outputs PS instead of PDF as Debian can not support the PDFlib.
   * Uses x-terminal-emulator instead of xterm.
   * Support for freedesktop menus, and nice new icon.

Modified: trunk/packages/seaview/trunk/debian/control
===================================================================
--- trunk/packages/seaview/trunk/debian/control	2009-05-17 00:19:41 UTC (rev 3383)
+++ trunk/packages/seaview/trunk/debian/control	2009-05-17 05:36:26 UTC (rev 3384)
@@ -4,7 +4,7 @@
 Maintainer: Debian-Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
 DM-Upload-Allowed: yes
 Uploaders: Charles Plessy <plessy at debian.org>
-Build-Depends: debhelper ( >= 7  ), libfltk1.1-dev, libjpeg62-dev, libpng12-dev, zlib1g-dev
+Build-Depends: debhelper ( >= 7  ), libfltk1.1-dev, libjpeg62-dev, libpng12-dev, libxft-dev, libxext-dev,  zlib1g-dev
 Standards-Version: 3.8.1
 Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/seaview/trunk/?rev=0&sc=0
 Vcs-Svn: svn://svn.debian.org/svn/debian-med/trunk/packages/seaview/trunk/

Modified: trunk/packages/seaview/trunk/debian/copyright
===================================================================
--- trunk/packages/seaview/trunk/debian/copyright	2009-05-17 00:19:41 UTC (rev 3383)
+++ trunk/packages/seaview/trunk/debian/copyright	2009-05-17 05:36:26 UTC (rev 3384)
@@ -1,15 +1,43 @@
-Format: Machine-readable license summary.
- See http://dep.debian.net/deps/dep5/
+Format: Machine-readable license summary, see http://dep.debian.net/deps/dep5/
 Name: SeaView
 Contact: Manolo Gouy <mgouy at biomserv.univ-lyon1.fr>
 Source: ftp://pbil.univ-lyon1.fr/pub/mol_phylogeny/seaview/archive/seaview_4.0.tar.gz
 
 Copyright: 1996-2009 Manolo Gouy <mgouy at biomserv.univ-lyon1.fr>
+License: GPL-2+
 Comment: If you use SeaView in a published work, please cite the following reference:
  Galtier, N., Gouy, M. and Gautier, C. (1996) SeaView and Phylo_win, two graphic
  tools for sequence alignment and molecular phylogeny. Comput. Applic. Biosci.,
  12, 543-548.
+
+Files: csrc/bionj.c, csrc/phyml_util.h
+Copyright: © Stephane Guindon. Oct 2003 onward
 License: GPL-2+
+
+Files: csrc/dnapars.c, csrc/protpars.c
+ THESE FILES ARE NON-FREE, DO NOT UPLOAD THIS PACKAGE.
+
+Files: FL/*
+Copyright: © 2004 Greg Ercolano
+           © 2005 Nathan Vander Wilt 
+License: LGPL-2+
+
+Files: debian/*
+Copyright: © 1999 Stephane Bortzmeyer <bortzmeyer at debian.org>
+           © 2001 Dr. Guenter Bechly <gbechly at debian.org>
+	   © 2001 Adrian Bunk <bunk at fs.tum.de>
+	   © 2001 Doug Porter <dsp at debian.org>
+	   © 2002 Matej Vela <vela at debian.org>
+	   © 2003 Colin Watson <cjwatson at debian.org>
+	   © 2003 Aaron M. Ucko <ucko at debian.org>
+	   © 2003 Brian R Furry <bfurry at nac.net>
+	   © 2005 Steve Langasek <vorlon at debian.org>
+	   © 2007 Nelson A. de Oliveira <naoliv at debian.org>
+	   © 2006-2009 Charles Plessy <charles-debian-nospam at plessy.org>
+License: unknown
+ Please treat the contributions of Charles Plessy as if they were in the public domain.
+
+License: GPL-2+
  This package is free software; you can redistribute it and/or modify
  it under the terms of the GNU General Public License as published by
  the Free Software Foundation; either version 2 of the License, or
@@ -26,9 +54,6 @@
 Comment: On Debian systems, the complete text of the GNU General
  Public License version 2 can be found in `/usr/share/common-licenses/GPL-2'.
 
-Files: FL/*
-Copyright: © 2004 Greg Ercolano
-           © 2005 Nathan Vander Wilt 
 License: LGPL-2+
  This library is free software; you can redistribute it and/or
  modify it under the terms of the GNU Library General Public
@@ -45,18 +70,3 @@
  Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston MA  02110-1301 USA
 Comment: On Debian systems, the complete text of the GNU Lesser General
  Public License version 2 can be found in `/usr/share/common-licenses/LGPL-2'.
-
-Files: debian/*
-Copyright: © 1999 Stephane Bortzmeyer <bortzmeyer at debian.org>
-           © 2001 Dr. Guenter Bechly <gbechly at debian.org>
-	   © 2001 Adrian Bunk <bunk at fs.tum.de>
-	   © 2001 Doug Porter <dsp at debian.org>
-	   © 2002 Matej Vela <vela at debian.org>
-	   © 2003 Colin Watson <cjwatson at debian.org>
-	   © 2003 Aaron M. Ucko <ucko at debian.org>
-	   © 2003 Brian R Furry <bfurry at nac.net>
-	   © 2005 Steve Langasek <vorlon at debian.org>
-	   © 2007 Nelson A. de Oliveira <naoliv at debian.org>
-	   © 2006-2009 Charles Plessy <charles-debian-nospam at plessy.org>
-License: unknown
- Please treat the contributions of Charles Plessy as if they were in the public domain.

Modified: trunk/packages/seaview/trunk/debian/seaview.doc-base.help
===================================================================
--- trunk/packages/seaview/trunk/debian/seaview.doc-base.help	2009-05-17 00:19:41 UTC (rev 3383)
+++ trunk/packages/seaview/trunk/debian/seaview.doc-base.help	2009-05-17 05:36:26 UTC (rev 3384)
@@ -6,3 +6,4 @@
 
 Format: HTML
 Index: /usr/share/doc/seaview/seaview.html
+Files: /usr/share/doc/seaview/seaview.html

More information about the debian-med-commit mailing list