[med-svn] r4360 - in trunk/packages/melting/trunk/debian: . patches

[Charles Plessy]

Author: plessy
Date: 2009-11-20 01:19:08 +0000 (Fri, 20 Nov 2009)
New Revision: 4360

Added:
   trunk/packages/melting/trunk/debian/README.Debian
   trunk/packages/melting/trunk/debian/upstream-metadata.yaml
Removed:
   trunk/packages/melting/trunk/debian/patches/tkmelting_call_melting.patch
Modified:
   trunk/packages/melting/trunk/debian/changelog
   trunk/packages/melting/trunk/debian/copyright
   trunk/packages/melting/trunk/debian/patches/series
Log:
Uploaded new upstream release with packaging improvements:

  - Removed debian/patches/tkmelting_call_melting.patch (obsolete)
  - Added various informations about upstream in debian/upstream-metadata.yaml.
  - Document how to test melting and tkmelting in debian/README.Debian.


Added: trunk/packages/melting/trunk/debian/README.Debian
===================================================================
--- trunk/packages/melting/trunk/debian/README.Debian	                        (rev 0)
+++ trunk/packages/melting/trunk/debian/README.Debian	2009-11-20 01:19:08 UTC (rev 4360)
@@ -0,0 +1,17 @@
+Meting for Debian
+─────────────────
+
+Notes about how this package was tested:
+
+After building locally on the developper’s computer, the programs melting and
+tkmelting were briefly tested before uploading the package to the Debian
+archive.
+
+ - melting was ran with the following command line:
+   melting -SAAAAAAAAAAAAAAA -HA -k0.01 -P0.01
+
+ - The tkmelting interface was invoked from the Gnome menu, and the meltin
+   temperature of 0.01 M of the AAAAAAAAAAAAAAA oligonucleotide was calculated
+   for a 0.01 M salt concentration.
+
+ -- Charles Plessy <plessy at debian.org>  Fri, 20 Nov 2009 10:00:28 +0900

Modified: trunk/packages/melting/trunk/debian/changelog
===================================================================
--- trunk/packages/melting/trunk/debian/changelog	2009-11-19 19:42:47 UTC (rev 4359)
+++ trunk/packages/melting/trunk/debian/changelog	2009-11-20 01:19:08 UTC (rev 4360)
@@ -1,13 +1,15 @@
-melting (4.3b-2) UNRELEASED; urgency=low
+melting (4.3c-1) unstable; urgency=low
 
-  * debian/patches/tkmelting_call_melting.patch:
+  * New upstream release:
     calls melting from the PATH with its base name (Closes: #549881).
   * debian/melting/install:
       multi.pl and profil.pl available in /usr/share/melting.
   * debian/copyright refreshed to latest experimentations on the format.
   * Target generating tkmelting manpage removed from debian/rules.
+  * Added various informations about upstream in debian/upstream-metadata.yaml.
+  * Document how to test melting and tkmelting in debian/README.Debian.
 
- -- Charles Plessy <plessy at debian.org>  Tue, 06 Oct 2009 18:36:01 +0900
+ -- Charles Plessy <plessy at debian.org>  Fri, 20 Nov 2009 10:00:28 +0900
 
 melting (4.3b-1) unstable; urgency=low
 

Modified: trunk/packages/melting/trunk/debian/copyright
===================================================================
--- trunk/packages/melting/trunk/debian/copyright	2009-11-19 19:42:47 UTC (rev 4359)
+++ trunk/packages/melting/trunk/debian/copyright	2009-11-20 01:19:08 UTC (rev 4360)
@@ -3,7 +3,7 @@
 Name: Melting
 Contact: Nicolas Le Novère   <lenov at ebi.ac.uk>
          Marine Dumousseau  <marine at ebi.ac.uk>
-Source: http://www.mirrorservice.org/sites/download.sourceforge.net/pub/sourceforge/m/me/melting/melting4_3.tar.gz
+Source: http://qa.debian.org/watch/sf.php/melting/melting4_3c.tar.gz
 
 Copyright: 1997–2009, Nicolas Le Novère   <lenov at ebi.ac.uk>
            1997–2009, Marine Dumousseau  <marine at ebi.ac.uk>

Modified: trunk/packages/melting/trunk/debian/patches/series
===================================================================
--- trunk/packages/melting/trunk/debian/patches/series	2009-11-19 19:42:47 UTC (rev 4359)
+++ trunk/packages/melting/trunk/debian/patches/series	2009-11-20 01:19:08 UTC (rev 4360)
@@ -1,3 +1,2 @@
 tkmelting.patch
 20_fix_manpage.patch
-tkmelting_call_melting.patch

Deleted: trunk/packages/melting/trunk/debian/patches/tkmelting_call_melting.patch
===================================================================
--- trunk/packages/melting/trunk/debian/patches/tkmelting_call_melting.patch	2009-11-19 19:42:47 UTC (rev 4359)
+++ trunk/packages/melting/trunk/debian/patches/tkmelting_call_melting.patch	2009-11-20 01:19:08 UTC (rev 4360)
@@ -1,14 +0,0 @@
-Description: calls melting with its base name from the PATH.
-Author: Charles Plessy <plessy at debian.org>
-Forwarded: Marine Dumousseau <marine at ebi.ac.uk>, Nicolas Le Novère <lenov at ebi.ac.uk>
---- a/BIN/tkmelting.pl
-+++ b/BIN/tkmelting.pl
-@@ -537,7 +537,7 @@ sub compute {
- # C'est parti
- #-------------
-     
--    @results=`./melting4_4-linuxi386 $options -v -q 2>&1`;
-+    @results=`melting $options -v -q 2>&1`;
-     print "@results";
- 
- #------------------------

Added: trunk/packages/melting/trunk/debian/upstream-metadata.yaml
===================================================================
--- trunk/packages/melting/trunk/debian/upstream-metadata.yaml	                        (rev 0)
+++ trunk/packages/melting/trunk/debian/upstream-metadata.yaml	2009-11-20 01:19:08 UTC (rev 4360)
@@ -0,0 +1,21 @@
+DOI: 10.1093/bioinformatics/17.12.1226
+PubMed: 11751232
+Reference_author: Le Novère, Nicolas
+Reference_title: MELTING, computing the melting temperature of nucleic acid duplex
+Reference_journal: Bioinformatics
+Reference_volume: 17
+Reference_number: 12
+Reference_pages: 1226-1227
+Reference_year: 2001
+Reference_URL: http://bioinformatics.oxfordjournals.org/cgi/content/abstract/17/12/1226
+Reference_eprint: http://bioinformatics.oxfordjournals.org/cgi/reprint/17/12/1226.pdf
+Reference:
+ author: Le Novère, Nicolas
+ title: MELTING, computing the melting temperature of nucleic acid duplex
+ journal: Bioinformatics
+ volume: 17
+ number: 12
+ pages: 1226-1227
+ year: 2001
+ URL: http://bioinformatics.oxfordjournals.org/cgi/content/abstract/17/12/1226
+ eprint: http://bioinformatics.oxfordjournals.org/cgi/reprint/17/12/1226.pdf