[med-svn] r4383 - in trunk/community/infrastructure/getData: . getData.conf.d

[Charles Plessy]

Author: plessy
Date: 2009-11-23 10:42:40 +0000 (Mon, 23 Nov 2009)
New Revision: 4383

Added:
   trunk/community/infrastructure/getData/getData.conf.d/human.getData
   trunk/community/infrastructure/getData/getData.conf.d/human.getData.mk
Modified:
   trunk/community/infrastructure/getData/ChangeLog
Log:
Added human genome build GRCh37.56.


Modified: trunk/community/infrastructure/getData/ChangeLog
===================================================================
--- trunk/community/infrastructure/getData/ChangeLog	2009-11-23 08:35:40 UTC (rev 4382)
+++ trunk/community/infrastructure/getData/ChangeLog	2009-11-23 10:42:40 UTC (rev 4383)
@@ -1,3 +1,7 @@
+2009-11-23  Charles Plessy <plessy at debian.org>
+
+    * getData.conf.d/human.getData.mk: added human genome build GRCh37.56.
+
 2009-08-27  Charles Plessy <plessy at debian.org>
 
     * getData.conf.d/mouse.getData.mk: upgraded to build NCBIM37.55.

Copied: trunk/community/infrastructure/getData/getData.conf.d/human.getData (from rev 4382, trunk/community/infrastructure/getData/getData.conf.d/mouse.getData)
===================================================================
--- trunk/community/infrastructure/getData/getData.conf.d/human.getData	                        (rev 0)
+++ trunk/community/infrastructure/getData/getData.conf.d/human.getData	2009-11-23 10:42:40 UTC (rev 4383)
@@ -0,0 +1,10 @@
+print STDERR "Reading Homo sapiens configuration file\n" if $verbose;
+
+$toBeMirrored{"human.genome"}={
+  "name" => "hg19 – Genome Reference Consortium",
+  "tags" => ["human","genome"],
+  "source" => "make -f /etc/getData.conf.d/human.getData.mk get unpack",
+#  "post-download" => "make blast"
+};
+
+1;

Copied: trunk/community/infrastructure/getData/getData.conf.d/human.getData.mk (from rev 4382, trunk/community/infrastructure/getData/getData.conf.d/mouse.getData.mk)
===================================================================
--- trunk/community/infrastructure/getData/getData.conf.d/human.getData.mk	                        (rev 0)
+++ trunk/community/infrastructure/getData/getData.conf.d/human.getData.mk	2009-11-23 10:42:40 UTC (rev 4383)
@@ -0,0 +1,6 @@
+ORGANISM   = Homo_sapiens
+ORGANISM_L = homo_sapiens
+BUILD      = GRCh37.56
+NICKNAME   = hg19
+
+include /etc/getData.conf.d/Ensembl_genome.mk