[med-svn] r4408 - trunk/packages/readseq/trunk/debian

Andreas Tille tille at alioth.debian.org
Thu Nov 26 12:11:46 UTC 2009


Author: tille
Date: 2009-11-26 12:11:45 +0000 (Thu, 26 Nov 2009)
New Revision: 4408

Added:
   trunk/packages/readseq/trunk/debian/README.source
   trunk/packages/readseq/trunk/debian/install
Removed:
   trunk/packages/readseq/trunk/debian/dirs
Modified:
   trunk/packages/readseq/trunk/debian/README.debian
   trunk/packages/readseq/trunk/debian/changelog
   trunk/packages/readseq/trunk/debian/control
   trunk/packages/readseq/trunk/debian/copyright
   trunk/packages/readseq/trunk/debian/readseq.1
Log:
Small polishing fixes, upload to unstable


Modified: trunk/packages/readseq/trunk/debian/README.debian
===================================================================
--- trunk/packages/readseq/trunk/debian/README.debian	2009-11-26 12:00:43 UTC (rev 4407)
+++ trunk/packages/readseq/trunk/debian/README.debian	2009-11-26 12:11:45 UTC (rev 4408)
@@ -43,7 +43,7 @@
 LinAll format: used by the 'LinAll' and 'ConStruct' RNA structure packages
 from the Duesseldorf biophysics group.
 
-Vienna RNA format: used by the Vienna RNA package avaiable from the
+Vienna RNA format: used by the Vienna RNA package available from the
 Theoretical Chemistry group at Vienna University.
 
 Michael Schmitz <schmitz at debian.org>  Wed, 11 Dec 2002 13:38:05 +0200

Added: trunk/packages/readseq/trunk/debian/README.source
===================================================================
--- trunk/packages/readseq/trunk/debian/README.source	                        (rev 0)
+++ trunk/packages/readseq/trunk/debian/README.source	2009-11-26 12:11:45 UTC (rev 4408)
@@ -0,0 +1,4 @@
+This packages uses the quilt patch system. Please read
+/usr/share/doc/quilt/README.source for more information.
+
+ -- Andreas Tille <tille at debian.org>  Mon, 31 Aug 2009 14:50:19 +0200

Modified: trunk/packages/readseq/trunk/debian/changelog
===================================================================
--- trunk/packages/readseq/trunk/debian/changelog	2009-11-26 12:00:43 UTC (rev 4407)
+++ trunk/packages/readseq/trunk/debian/changelog	2009-11-26 12:11:45 UTC (rev 4408)
@@ -1,15 +1,16 @@
-readseq (1-8) UNRELEASED; urgency=low
+readseq (1-8) unstable; urgency=low
 
   [ Charles Plessy ]
   * DM-Upload-Allowed: Yes
 
   [ Andreas Tille ]
   * Added Vcs-Browser, Vcs-Svn
-  * Standards-Version: 3.8.3 (no changes needed)
+  * Standards-Version: 3.8.3 (added README.source)
   * Debhelper 7
   * Switch to quilt
   * debian/patches/552830.patch: Patch from Ruben Molina <rmolina at udea.edu.co>
-    to fix build problem (thanks to Ruben)
+    to fix build problem (thanks to Ruben), changed one last remaining of
+    getline myself
     Closes: #552830
 
  -- Andreas Tille <tille at debian.org>  Thu, 26 Nov 2009 12:31:49 +0100

Modified: trunk/packages/readseq/trunk/debian/control
===================================================================
--- trunk/packages/readseq/trunk/debian/control	2009-11-26 12:00:43 UTC (rev 4407)
+++ trunk/packages/readseq/trunk/debian/control	2009-11-26 12:11:45 UTC (rev 4408)
@@ -12,7 +12,7 @@
 
 Package: readseq
 Architecture: any
-Depends: ${shlibs:Depends}
+Depends: ${shlibs:Depends}, ${misc:Depends}
 Description: [Biology] Conversion between sequence formats
  Reads and writes nucleic/protein sequences in various
  formats. Data files may have multiple sequences.

Modified: trunk/packages/readseq/trunk/debian/copyright
===================================================================
--- trunk/packages/readseq/trunk/debian/copyright	2009-11-26 12:00:43 UTC (rev 4407)
+++ trunk/packages/readseq/trunk/debian/copyright	2009-11-26 12:11:45 UTC (rev 4408)
@@ -33,6 +33,6 @@
 
 - Don
 
-The Debian packaging is (C) 2001-2007  Andreas Tille <tille at debian.org>
+The Debian packaging is © 2001-2009  Andreas Tille <tille at debian.org>
 and is licensed under the GPL which is available at
 `/usr/share/common-licenses/GPL'.

Deleted: trunk/packages/readseq/trunk/debian/dirs
===================================================================
--- trunk/packages/readseq/trunk/debian/dirs	2009-11-26 12:00:43 UTC (rev 4407)
+++ trunk/packages/readseq/trunk/debian/dirs	2009-11-26 12:11:45 UTC (rev 4408)
@@ -1,4 +0,0 @@
-usr/bin
-usr/share/doc/readseq
-usr/share/doc/readseq/tests
-usr/share/man/man1

Added: trunk/packages/readseq/trunk/debian/install
===================================================================
--- trunk/packages/readseq/trunk/debian/install	                        (rev 0)
+++ trunk/packages/readseq/trunk/debian/install	2009-11-26 12:11:45 UTC (rev 4408)
@@ -0,0 +1,3 @@
+readseq   usr/bin
+Makefile  usr/share/doc/readseq/tests
+*.std     usr/share/doc/readseq/tests

Modified: trunk/packages/readseq/trunk/debian/readseq.1
===================================================================
--- trunk/packages/readseq/trunk/debian/readseq.1	2009-11-26 12:00:43 UTC (rev 4407)
+++ trunk/packages/readseq/trunk/debian/readseq.1	2009-11-26 12:11:45 UTC (rev 4408)
@@ -124,7 +124,7 @@
 
 .TP
 .B \-f[ormat=]#    Format number for output,  or
-    -f[ormat=]Name Format name for output:
+    \-f[ormat=]Name Format name for output:
     1. IG/Stanford           11. Phylip3.2       
     2. GenBank/GB            12. Phylip          
     3. NBRF                  13. Plain/Raw       
@@ -187,19 +187,19 @@
       -- for interactive use
 
 .TP
-  readseq my.1st.seq  my.2nd.seq  -all  -format=genbank  -output=my.gb
+  readseq my.1st.seq  my.2nd.seq  \-all  \-format=genbank  \-output=my.gb
       -- convert all of two input files to one genbank format output file
 
 .TP
-  readseq my.seq -all -form=pretty -nameleft=3 -numleft -numright -numtop -match
+  readseq my.seq \-all \-form=pretty \-nameleft=3 \-numleft \-numright \-numtop \-match
       -- output to standard output a file in a pretty format
 
 .TP
-  readseq my.seq -item=9,8,3,2 -degap -CASE -rev -f=msf -out=my.rev
+  readseq my.seq \-item=9,8,3,2 \-degap \-CASE \-rev \-f=msf \-out=my.rev
       -- select 4 items from input, degap, reverse, and uppercase them
 
 .TP
-  cat *.seq | readseq -pipe -all -format=asn > bunch-of.asn
+  cat *.seq | readseq \-pipe \-all \-format=asn > bunch-of.asn
       -- pipe a bunch of data thru readseq, converting all to asn
 .PD 1
 




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