[med-svn] r4408 - trunk/packages/readseq/trunk/debian
Andreas Tille
tille at alioth.debian.org
Thu Nov 26 12:11:46 UTC 2009
Author: tille
Date: 2009-11-26 12:11:45 +0000 (Thu, 26 Nov 2009)
New Revision: 4408
Added:
trunk/packages/readseq/trunk/debian/README.source
trunk/packages/readseq/trunk/debian/install
Removed:
trunk/packages/readseq/trunk/debian/dirs
Modified:
trunk/packages/readseq/trunk/debian/README.debian
trunk/packages/readseq/trunk/debian/changelog
trunk/packages/readseq/trunk/debian/control
trunk/packages/readseq/trunk/debian/copyright
trunk/packages/readseq/trunk/debian/readseq.1
Log:
Small polishing fixes, upload to unstable
Modified: trunk/packages/readseq/trunk/debian/README.debian
===================================================================
--- trunk/packages/readseq/trunk/debian/README.debian 2009-11-26 12:00:43 UTC (rev 4407)
+++ trunk/packages/readseq/trunk/debian/README.debian 2009-11-26 12:11:45 UTC (rev 4408)
@@ -43,7 +43,7 @@
LinAll format: used by the 'LinAll' and 'ConStruct' RNA structure packages
from the Duesseldorf biophysics group.
-Vienna RNA format: used by the Vienna RNA package avaiable from the
+Vienna RNA format: used by the Vienna RNA package available from the
Theoretical Chemistry group at Vienna University.
Michael Schmitz <schmitz at debian.org> Wed, 11 Dec 2002 13:38:05 +0200
Added: trunk/packages/readseq/trunk/debian/README.source
===================================================================
--- trunk/packages/readseq/trunk/debian/README.source (rev 0)
+++ trunk/packages/readseq/trunk/debian/README.source 2009-11-26 12:11:45 UTC (rev 4408)
@@ -0,0 +1,4 @@
+This packages uses the quilt patch system. Please read
+/usr/share/doc/quilt/README.source for more information.
+
+ -- Andreas Tille <tille at debian.org> Mon, 31 Aug 2009 14:50:19 +0200
Modified: trunk/packages/readseq/trunk/debian/changelog
===================================================================
--- trunk/packages/readseq/trunk/debian/changelog 2009-11-26 12:00:43 UTC (rev 4407)
+++ trunk/packages/readseq/trunk/debian/changelog 2009-11-26 12:11:45 UTC (rev 4408)
@@ -1,15 +1,16 @@
-readseq (1-8) UNRELEASED; urgency=low
+readseq (1-8) unstable; urgency=low
[ Charles Plessy ]
* DM-Upload-Allowed: Yes
[ Andreas Tille ]
* Added Vcs-Browser, Vcs-Svn
- * Standards-Version: 3.8.3 (no changes needed)
+ * Standards-Version: 3.8.3 (added README.source)
* Debhelper 7
* Switch to quilt
* debian/patches/552830.patch: Patch from Ruben Molina <rmolina at udea.edu.co>
- to fix build problem (thanks to Ruben)
+ to fix build problem (thanks to Ruben), changed one last remaining of
+ getline myself
Closes: #552830
-- Andreas Tille <tille at debian.org> Thu, 26 Nov 2009 12:31:49 +0100
Modified: trunk/packages/readseq/trunk/debian/control
===================================================================
--- trunk/packages/readseq/trunk/debian/control 2009-11-26 12:00:43 UTC (rev 4407)
+++ trunk/packages/readseq/trunk/debian/control 2009-11-26 12:11:45 UTC (rev 4408)
@@ -12,7 +12,7 @@
Package: readseq
Architecture: any
-Depends: ${shlibs:Depends}
+Depends: ${shlibs:Depends}, ${misc:Depends}
Description: [Biology] Conversion between sequence formats
Reads and writes nucleic/protein sequences in various
formats. Data files may have multiple sequences.
Modified: trunk/packages/readseq/trunk/debian/copyright
===================================================================
--- trunk/packages/readseq/trunk/debian/copyright 2009-11-26 12:00:43 UTC (rev 4407)
+++ trunk/packages/readseq/trunk/debian/copyright 2009-11-26 12:11:45 UTC (rev 4408)
@@ -33,6 +33,6 @@
- Don
-The Debian packaging is (C) 2001-2007 Andreas Tille <tille at debian.org>
+The Debian packaging is © 2001-2009 Andreas Tille <tille at debian.org>
and is licensed under the GPL which is available at
`/usr/share/common-licenses/GPL'.
Deleted: trunk/packages/readseq/trunk/debian/dirs
===================================================================
--- trunk/packages/readseq/trunk/debian/dirs 2009-11-26 12:00:43 UTC (rev 4407)
+++ trunk/packages/readseq/trunk/debian/dirs 2009-11-26 12:11:45 UTC (rev 4408)
@@ -1,4 +0,0 @@
-usr/bin
-usr/share/doc/readseq
-usr/share/doc/readseq/tests
-usr/share/man/man1
Added: trunk/packages/readseq/trunk/debian/install
===================================================================
--- trunk/packages/readseq/trunk/debian/install (rev 0)
+++ trunk/packages/readseq/trunk/debian/install 2009-11-26 12:11:45 UTC (rev 4408)
@@ -0,0 +1,3 @@
+readseq usr/bin
+Makefile usr/share/doc/readseq/tests
+*.std usr/share/doc/readseq/tests
Modified: trunk/packages/readseq/trunk/debian/readseq.1
===================================================================
--- trunk/packages/readseq/trunk/debian/readseq.1 2009-11-26 12:00:43 UTC (rev 4407)
+++ trunk/packages/readseq/trunk/debian/readseq.1 2009-11-26 12:11:45 UTC (rev 4408)
@@ -124,7 +124,7 @@
.TP
.B \-f[ormat=]# Format number for output, or
- -f[ormat=]Name Format name for output:
+ \-f[ormat=]Name Format name for output:
1. IG/Stanford 11. Phylip3.2
2. GenBank/GB 12. Phylip
3. NBRF 13. Plain/Raw
@@ -187,19 +187,19 @@
-- for interactive use
.TP
- readseq my.1st.seq my.2nd.seq -all -format=genbank -output=my.gb
+ readseq my.1st.seq my.2nd.seq \-all \-format=genbank \-output=my.gb
-- convert all of two input files to one genbank format output file
.TP
- readseq my.seq -all -form=pretty -nameleft=3 -numleft -numright -numtop -match
+ readseq my.seq \-all \-form=pretty \-nameleft=3 \-numleft \-numright \-numtop \-match
-- output to standard output a file in a pretty format
.TP
- readseq my.seq -item=9,8,3,2 -degap -CASE -rev -f=msf -out=my.rev
+ readseq my.seq \-item=9,8,3,2 \-degap \-CASE \-rev \-f=msf \-out=my.rev
-- select 4 items from input, degap, reverse, and uppercase them
.TP
- cat *.seq | readseq -pipe -all -format=asn > bunch-of.asn
+ cat *.seq | readseq \-pipe \-all \-format=asn > bunch-of.asn
-- pipe a bunch of data thru readseq, converting all to asn
.PD 1
More information about the debian-med-commit
mailing list