[med-svn] r4151 - trunk/packages/last-align/trunk/debian

[Andreas Tille]

Author: tille
Date: 2009-10-05 10:45:46 +0000 (Mon, 05 Oct 2009)
New Revision: 4151

Removed:
   trunk/packages/last-align/trunk/debian/patches/
Modified:
   trunk/packages/last-align/trunk/debian/changelog
   trunk/packages/last-align/trunk/debian/control
   trunk/packages/last-align/trunk/debian/rules
Log:
New upstream version which provides --help option for all executables - so we can use help2man in all cases, but writing real man pages would be better because no drastic changes are planned by upstream.  Any volunteer?


Modified: trunk/packages/last-align/trunk/debian/changelog
===================================================================
--- trunk/packages/last-align/trunk/debian/changelog	2009-10-05 10:42:26 UTC (rev 4150)
+++ trunk/packages/last-align/trunk/debian/changelog	2009-10-05 10:45:46 UTC (rev 4151)
@@ -1,3 +1,14 @@
+last-align (70-1) unstable; urgency=low
+
+  * New upstream version
+  * Removed quilt dependency because upstream has applied patches
+  * help2man for all scripts
+    TODO: Write real manpages using the comments inside the scripts.
+    Upstream confirmed that there are no immediate plans for further
+    changes so writing static man pages seems to make sense
+
+ -- Andreas Tille <tille at debian.org>  Mon, 05 Oct 2009 11:56:25 +0200
+
 last-align (62-1) unstable; urgency=low
 
   * New upstream version

Modified: trunk/packages/last-align/trunk/debian/control
===================================================================
--- trunk/packages/last-align/trunk/debian/control	2009-10-05 10:42:26 UTC (rev 4150)
+++ trunk/packages/last-align/trunk/debian/control	2009-10-05 10:45:46 UTC (rev 4151)
@@ -5,7 +5,7 @@
 DM-Upload-Allowed: yes
 Uploaders: Charles Plessy <plessy at debian.org>,
  Andreas Tille <tille at debian.org>
-Build-Depends: debhelper (>= 7), cdbs, help2man, quilt, python-imaging
+Build-Depends: debhelper (>= 7), cdbs, help2man, python-imaging
 Standards-Version: 3.8.3
 Homepage: http://last.cbrc.jp/
 Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/last-align/trunk/?rev=0&sc=0

Modified: trunk/packages/last-align/trunk/debian/rules
===================================================================
--- trunk/packages/last-align/trunk/debian/rules	2009-10-05 10:42:26 UTC (rev 4150)
+++ trunk/packages/last-align/trunk/debian/rules	2009-10-05 10:45:46 UTC (rev 4151)
@@ -7,13 +7,13 @@
 # http://debian-med.alioth.debian.org/docs/policy.html
 
 include /usr/share/cdbs/1/rules/debhelper.mk
-include /usr/share/cdbs/1/rules/patchsys-quilt.mk
+# include /usr/share/cdbs/1/rules/patchsys-quilt.mk
 include /usr/share/cdbs/1/class/makefile.mk
 
 DEB_MAKE_BUILD_TARGET   = --directory src
 
 pkg=last-align
-version=$(shell dpkg-parsechangelog | grep "^Version:" | sed -e "s/^Version:[[:space:]]\+\([\.0-9]*\)-[0-9]\+[[:space:]]*/\1/" )
+version=$(shell dpkg-parsechangelog -ldebian/changelog | grep Version: | cut -f2 -d' ' | cut -f1 -d- )
 mandir=$(CURDIR)/debian/$(pkg)/usr/share/man/man1/
 
 clean::
@@ -45,6 +45,21 @@
 	help2man --no-info --version-string="$(version)" \
                  --name="converts MAF-format alignments to a human-friendly HTML format" \
                  $(CURDIR)/scripts/maf2html.py > $(mandir)/maf2html.1
+	help2man --no-info --version-string="$(version)" \
+                 --name="Add extra column with mapping probabilities" \
+                 $(CURDIR)/scripts/last-map-probs.py > $(mandir)/last-map-probs.1
+	help2man --no-info --version-string="$(version)" \
+                 --name="Clean up MAF-format alignments" \
+                 $(CURDIR)/scripts/last-reduce-alignments.sh > $(mandir)/last-reduce-alignments.1
+	help2man --no-info --version-string="$(version)" \
+                 --name='Remove MAF-format alignments which are "dominated" by others' \
+                 $(CURDIR)/scripts/last-remove-dominated.py > $(mandir)/last-remove-dominated.1
+	help2man --no-info --version-string="$(version)" \
+                 --name="Join two or more sets of MAF-format multiple alignments" \
+                 $(CURDIR)/scripts/maf-join.py > $(mandir)/maf-join.1
+	help2man --no-info --version-string="$(version)" \
+                 --name="Convert MAF format alignments to tabular format" \
+                 $(CURDIR)/scripts/maf2tab.py > $(mandir)/maf2tab.1
 
 # The unzip command from the unzip package is needed for this one.
 # Please update debian/changelog before calling this target.