[med-svn] r4175 - trunk/packages/kalign/trunk/debian

[Andreas Tille]

Author: tille
Date: 2009-10-06 15:07:35 +0000 (Tue, 06 Oct 2009)
New Revision: 4175

Added:
   trunk/packages/kalign/trunk/debian/kalign.bash_completion
Modified:
   trunk/packages/kalign/trunk/debian/changelog
   trunk/packages/kalign/trunk/debian/rules
Log:
Add bash completion


Modified: trunk/packages/kalign/trunk/debian/changelog
===================================================================
--- trunk/packages/kalign/trunk/debian/changelog	2009-10-06 14:44:38 UTC (rev 4174)
+++ trunk/packages/kalign/trunk/debian/changelog	2009-10-06 15:07:35 UTC (rev 4175)
@@ -1,4 +1,4 @@
-kalign (2.04-2) UNRELEASED; urgency=low
+kalign (2.04-2) unstable; urgency=low
 
   [ David Paleino ]
   * Removed myself from Uploaders
@@ -14,6 +14,9 @@
     - deactivated; upstream does not seem to respond to our request
       to enable versioned tarballs - so the watch file makes no sense
       Closes: #456479
+  * Applied patch to enable bash completion.  Thanks to David Paleino
+    <d.paleino at gmail.com>
+    Closes: #446047
 
  -- Andreas Tille <tille at debian.org>  Tue, 06 Oct 2009 16:21:45 +0200
 

Added: trunk/packages/kalign/trunk/debian/kalign.bash_completion
===================================================================
--- trunk/packages/kalign/trunk/debian/kalign.bash_completion	                        (rev 0)
+++ trunk/packages/kalign/trunk/debian/kalign.bash_completion	2009-10-06 15:07:35 UTC (rev 4175)
@@ -0,0 +1,65 @@
+# -*- mode: shell-script; sh-basic-offset: 8; indent-tabs-mode: t -*-
+# ex: ts=8 sw=8 noet filetype=sh
+#
+# kalign(1) completion
+#
+have kalign && {
+_kalign() {
+	local cur prev
+	
+	COMPREPLY=()
+	cur=`_get_cword`
+	prev=${COMP_WORDS[COMP_CWORD-1]}
+	
+	case "$prev" in
+		-@(i|input|infile|in|o|output|outfile|out))
+			_filedir
+			return 0
+			;;
+		-@(c|sort))
+			COMPREPLY=( $( compgen -W "input tree gaps" -- "$cur" ) )
+			return 0
+			;;
+		-@(g|feature))
+			# TODO: finish this list!
+			COMPREPLY=( $( compgen -W "all maxplp STRUCT PFAM-A" -- "$cur" ) )
+			return 0
+			;;
+		-@(d|distance))
+			COMPREPLY=( $( compgen -W "wu pair" -- "$cur" ) )
+			return 0
+			;;
+		-@(b|guide_tree|tree))
+			COMPREPLY=( $( compgen -W "nj upgma" -- "$cur" ) )
+			return 0
+			;;
+		-@(f|format))
+			COMPREPLY=( $( compgen -W "fasta msf aln clu macsim" -- "$cur" ) )
+			return 0
+			;;
+		
+	esac
+	
+	if [[ "$cur" == -* ]]; then
+		COMPREPLY=( $( compgen -W "-s -gapopen -gap_open -gpo \
+			-e -gapextension -gap_ext -gpe \
+			-t -terminal_gap_extension_penalty -tgpe \
+			-m -matrix_bonus -bonus \
+			-c -sort \
+			-g -feature -same_feature_score -diff_feature_score \
+			-d -distance \
+			-b -guide-tree -tree \
+			-z -zcutoff \
+			-i -input -infile -in \
+			-o -output -outfile -out \
+			-a -gap_inc \
+			-f -format \
+			-q -quiet" \
+			-- "$cur" ) )
+	else
+		_filedir
+	fi
+	return 0
+}
+complete -F _kalign $filenames kalign
+}

Modified: trunk/packages/kalign/trunk/debian/rules
===================================================================
--- trunk/packages/kalign/trunk/debian/rules	2009-10-06 14:44:38 UTC (rev 4174)
+++ trunk/packages/kalign/trunk/debian/rules	2009-10-06 15:07:35 UTC (rev 4175)
@@ -2,8 +2,10 @@
 # -*- makefile -*-
 # Build rules for the Debian package kalign
 
+pkg:=kalign
+
 %:
 	dh $@
 
 override_dh_auto_install:
-	dh_install
+	install -D -m u=rw,go=r debian/$(pkg).bash_completion $(CURDIR)/debian/$(pkg)/etc/bash_completion.d/$(pkg)