[med-svn] r4209 - in trunk/packages/alien-hunter/trunk/debian: . patches

[Andreas Tille]

Author: tille
Date: 2009-10-14 11:06:32 +0000 (Wed, 14 Oct 2009)
New Revision: 4209

Added:
   trunk/packages/alien-hunter/trunk/debian/patches/10_location_of_perl.patch
Modified:
   trunk/packages/alien-hunter/trunk/debian/control
   trunk/packages/alien-hunter/trunk/debian/copyright
   trunk/packages/alien-hunter/trunk/debian/patches/series
   trunk/packages/alien-hunter/trunk/debian/rules
Log:
Some lintian issues


Modified: trunk/packages/alien-hunter/trunk/debian/control
===================================================================
--- trunk/packages/alien-hunter/trunk/debian/control	2009-10-14 10:25:32 UTC (rev 4208)
+++ trunk/packages/alien-hunter/trunk/debian/control	2009-10-14 11:06:32 UTC (rev 4209)
@@ -15,7 +15,7 @@
 Depends: ${shlibs:Depends}, ${misc:Depends}, libbytecode-java, libbiojava-java,
  libcommons-cli-java, libcommons-collections-java, libcommons-dbcp-java, libcommons-pool-java
 Suggests: bioperl
-Description: Interpolated Variable Order Motifs for identification of horizontally acquired DNA
+Description: Interpolated Variable Order Motifs to identify horizontally acquired DNA
  Alien_hunter is an application for the prediction of putative
  Horizontal Gene Transfer (HGT) events with the implementation of
  Interpolated Variable Order Motifs (IVOMs). An IVOM approach

Modified: trunk/packages/alien-hunter/trunk/debian/copyright
===================================================================
--- trunk/packages/alien-hunter/trunk/debian/copyright	2009-10-14 10:25:32 UTC (rev 4208)
+++ trunk/packages/alien-hunter/trunk/debian/copyright	2009-10-14 11:06:32 UTC (rev 4209)
@@ -16,7 +16,7 @@
  
  You should have received a copy of the GNU General Public License
  along with this program; if not, write to the Free Software
- Foundation, Inc., 59 Temple Place - Suite 330, Boston, MA  02111-1307, USA.
+ Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301, USA.
 X-Comment: On Debian GNU/Linux you can find these licenses under
  /usr/share/common-licenses/GPL
 

Added: trunk/packages/alien-hunter/trunk/debian/patches/10_location_of_perl.patch
===================================================================
--- trunk/packages/alien-hunter/trunk/debian/patches/10_location_of_perl.patch	                        (rev 0)
+++ trunk/packages/alien-hunter/trunk/debian/patches/10_location_of_perl.patch	2009-10-14 11:06:32 UTC (rev 4209)
@@ -0,0 +1,7 @@
+--- alien_hunter-1.7.orig/alien_hunter.pl
++++ alien_hunter-1.7/alien_hunter.pl
+@@ -1,4 +1,3 @@
+-#!/usr/local/bin/perl
+ 
+ =head1 NAME
+ 

Modified: trunk/packages/alien-hunter/trunk/debian/patches/series
===================================================================
--- trunk/packages/alien-hunter/trunk/debian/patches/series	2009-10-14 10:25:32 UTC (rev 4208)
+++ trunk/packages/alien-hunter/trunk/debian/patches/series	2009-10-14 11:06:32 UTC (rev 4209)
@@ -1 +1,2 @@
 10_fix_classpath.patch
+10_location_of_perl.patch

Modified: trunk/packages/alien-hunter/trunk/debian/rules
===================================================================
--- trunk/packages/alien-hunter/trunk/debian/rules	2009-10-14 10:25:32 UTC (rev 4208)
+++ trunk/packages/alien-hunter/trunk/debian/rules	2009-10-14 11:06:32 UTC (rev 4209)
@@ -5,7 +5,7 @@
 %:
 	dh --with quilt $@
 
-override_dh_install:
+override_dh_auto_build:
 	CLASSPATH=/usr/share/java/biojava.jar javac -Xlint:deprecation -Xlint:unchecked *.java
 
 override_dh_auto_clean: