[med-svn] r4217 - trunk/packages/seaview/trunk/debian
Charles Plessy
plessy at alioth.debian.org
Sun Oct 18 13:26:51 UTC 2009
Author: plessy
Date: 2009-10-18 13:26:50 +0000 (Sun, 18 Oct 2009)
New Revision: 4217
Added:
trunk/packages/seaview/trunk/debian/upstream-metadata.yaml
Modified:
trunk/packages/seaview/trunk/debian/changelog
trunk/packages/seaview/trunk/debian/control
trunk/packages/seaview/trunk/debian/copyright
Log:
New upstream release, with packaging changes reverting by mistake the last two commits.
* debian/control:
- checked package conformance with Policy 3.8.3 (no changes needed).
* Documented zlib.conf in debian/copyright.
* Added various informations in debian/upstream-metadata.yaml.
The reverted commits will be de-reverted shortly?\226?\128?\166
Modified: trunk/packages/seaview/trunk/debian/changelog
===================================================================
--- trunk/packages/seaview/trunk/debian/changelog 2009-10-16 20:56:58 UTC (rev 4216)
+++ trunk/packages/seaview/trunk/debian/changelog 2009-10-18 13:26:50 UTC (rev 4217)
@@ -1,17 +1,15 @@
-seaview (1:4.1-2) UNRELEASED; urgency=low
+seaview (1:4.2-1) unstable; urgency=low
- [ Charles Plessy ]
+ * New upstream release.
* debian/control:
- Build depend on unversionned libjpeg-dev package.
- Added XS-Autobuild: yes to benefit from the non-free autobuilders.
+ - checked package conformance with Policy 3.8.3 (no changes needed).
+ * Documented zlib.conf in debian/copyright.
+ * Added various informations in debian/upstream-metadata.yaml.
- [ Andreas Tille ]
- * debian/control:
- - Standards-Version: 3.8.3 (no changes needed)
- - s/Debian-Med/Debian Med/
+ -- Charles Plessy <plessy at debian.org> Sun, 18 Oct 2009 17:10:08 +0900
- -- Andreas Tille <tille at debian.org> Mon, 28 Sep 2009 08:31:09 +0200
-
seaview (1:4.1-1) unstable; urgency=low
* New upstream version adding nucleotide ambiguity symbols in consensus
Modified: trunk/packages/seaview/trunk/debian/control
===================================================================
--- trunk/packages/seaview/trunk/debian/control 2009-10-16 20:56:58 UTC (rev 4216)
+++ trunk/packages/seaview/trunk/debian/control 2009-10-18 13:26:50 UTC (rev 4217)
@@ -1,10 +1,9 @@
Source: seaview
Section: non-free/science
Priority: optional
-Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+Maintainer: Debian-Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
DM-Upload-Allowed: yes
-Uploaders: Charles Plessy <plessy at debian.org>,
- Andreas Tille <tille at debian.org>
+Uploaders: Charles Plessy <plessy at debian.org>
Build-Depends: debhelper ( >= 7 ), libfltk1.1-dev, libjpeg-dev, libpng12-dev, libxft-dev, libxext-dev, zlib1g-dev
Standards-Version: 3.8.3
Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/seaview/trunk/?rev=0&sc=0
Modified: trunk/packages/seaview/trunk/debian/copyright
===================================================================
--- trunk/packages/seaview/trunk/debian/copyright 2009-10-16 20:56:58 UTC (rev 4216)
+++ trunk/packages/seaview/trunk/debian/copyright 2009-10-18 13:26:50 UTC (rev 4217)
@@ -2,13 +2,13 @@
Name : SeaView
Contact : Manolo Gouy <mgouy at biomserv.univ-lyon1.fr>
-Source : ftp://pbil.univ-lyon1.fr/pub/mol_phylogeny/seaview/archive/seaview_4.1.tar.gz
+Source : ftp://pbil.univ-lyon1.fr/pub/mol_phylogeny/seaview/archive/seaview_4.2.tar.gz
Disclamer : This package is not part of the Debian operating system.
The seaview source and binary Debian packages are part of the “non-free” area
in our archive. The packages in this area are not part of the Debian system,
although they have been configured for use with Debian. We nevertheless support
- the use of the seaview source and binary Debian packages and provide
+ the use of the seaview source and binary Debian pacakges and provide
infrastructure for non-free packages (such as our bug tracking system and
mailing lists). The licences of SeaView do not forbid Debian from using
autobuilders to create binary packages.
@@ -111,6 +111,30 @@
On Debian systems, the complete text of the GNU Lesser General Public License
version 2 can be found in ‘/usr/share/common-licenses/LGPL-2’.
+Files: zconf.h
+Copyright: © 1995-1998 Jean-loup Gailly and Mark Adler
+License: zlib
+
+ This software is provided 'as-is', without any express or implied
+ warranty. In no event will the authors be held liable for any damages
+ arising from the use of this software.
+
+ Permission is granted to anyone to use this software for any purpose,
+ including commercial applications, and to alter it and redistribute it
+ freely, subject to the following restrictions:
+
+ 1. The origin of this software must not be misrepresented; you must not
+ claim that you wrote the original software. If you use this software
+ in a product, an acknowledgment in the product documentation would be
+ appreciated but is not required.
+ 2. Altered source versions must be plainly marked as such, and must not be
+ misrepresented as being the original software.
+ 3. This notice may not be removed or altered from any source distribution.
+
+ Jean-loup Gailly Mark Adler
+ jloup at gzip.org madler at alumni.caltech.edu
+
+
Files: debian/*
Copyright: © 1999 Stephane Bortzmeyer <bortzmeyer at debian.org>
© 2001 Dr. Guenter Bechly <gbechly at debian.org>
Copied: trunk/packages/seaview/trunk/debian/upstream-metadata.yaml (from rev 4044, trunk/packages/seaview/trunk/debian/references)
===================================================================
--- trunk/packages/seaview/trunk/debian/upstream-metadata.yaml (rev 0)
+++ trunk/packages/seaview/trunk/debian/upstream-metadata.yaml 2009-10-18 13:26:50 UTC (rev 4217)
@@ -0,0 +1,22 @@
+Contact: Manolo Gouy <mgouy at biomserv.univ-lyon1.fr>
+Documentation: http://pbil.univ-lyon1.fr/software/seaview_data/seaview
+DOI: 10.1093/bioinformatics/12.6.543
+Downloads: ftp://pbil.univ-lyon1.fr/pub/mol_phylogeny/seaview/archive/
+Homepage: http://pbil.univ-lyon1.fr/software/seaview
+PubMed: 9021275
+Reference: |
+ @article{N.Galtier12011996,
+ author = {Galtier, N. and Gouy, M. and Gautier, C.},
+ title = {{SEAVIEW and PHYLO_WIN: two graphic tools for sequence alignment and molecular phylogeny}},
+ journal = {Comput. Appl. Biosci.},
+ volume = {12},
+ number = {6},
+ pages = {543-548},
+ doi = {10.1093/bioinformatics/12.6.543},
+ year = {1996},
+ URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/12/6/543},
+ eprint = {http://bioinformatics.oxfordjournals.org/cgi/reprint/12/6/543.pdf}
+}
+Screenshots:
+ - http://pbil.univ-lyon1.fr/binaries/seaview4.png
+ - http://pbil.univ-lyon1.fr/binaries/seaview-tree.png
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