[med-svn] r4236 - trunk/packages/R/r-cran-qvalue/trunk/debian

Charles Plessy plessy at alioth.debian.org
Thu Oct 22 00:49:48 UTC 2009 

Author: plessy
Date: 2009-10-22 00:49:48 +0000 (Thu, 22 Oct 2009)
New Revision: 4236

Added:
   trunk/packages/R/r-cran-qvalue/trunk/debian/upstream-metadata.yaml
Modified:
   trunk/packages/R/r-cran-qvalue/trunk/debian/changelog
   trunk/packages/R/r-cran-qvalue/trunk/debian/control
   trunk/packages/R/r-cran-qvalue/trunk/debian/copyright
Log:
Rebuilt against R 2.10.0 because of its new documentation system, and various packaging improvements.

  * debian/control:
    - Removed version in dependance to R packages (satisfied in Lenny).
    - Incremented Standards-Version to reflect conformance with Policy 3.8.3
      (no changes needed).
  * Added various informations in debian/upstream-metadata.yaml.
  * debian/copyright adapted to the latest experimentation on the
    machine-readable format.


Modified: trunk/packages/R/r-cran-qvalue/trunk/debian/changelog
===================================================================
--- trunk/packages/R/r-cran-qvalue/trunk/debian/changelog	2009-10-21 12:52:00 UTC (rev 4235)
+++ trunk/packages/R/r-cran-qvalue/trunk/debian/changelog	2009-10-22 00:49:48 UTC (rev 4236)
@@ -1,3 +1,16 @@
+r-cran-qvalue (1.18.0-2) unstable; urgency=low
+
+  * Rebuilt against R 2.10.0 because of its new documentation system. 
+  * debian/control:
+    - Removed version in dependance to R packages (satisfied in Lenny).
+    - Incremented Standards-Version to reflect conformance with Policy 3.8.3
+      (no changes needed).
+  * Added various informations in debian/upstream-metadata.yaml.
+  * debian/copyright adapted to the latest experimentation on the
+    machine-readable format.
+
+ -- Charles Plessy <plessy at debian.org>  Thu, 22 Oct 2009 08:56:08 +0900
+
 r-cran-qvalue (1.18.0-1) unstable; urgency=low
 
   * New upstream release: changes in documentation and bug corrected

Modified: trunk/packages/R/r-cran-qvalue/trunk/debian/control
===================================================================
--- trunk/packages/R/r-cran-qvalue/trunk/debian/control	2009-10-21 12:52:00 UTC (rev 4235)
+++ trunk/packages/R/r-cran-qvalue/trunk/debian/control	2009-10-22 00:49:48 UTC (rev 4236)
@@ -3,15 +3,15 @@
 Priority: optional
 Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
 Uploaders: Steffen Moeller <moeller at debian.org>, Charles Plessy <plessy at debian.org>
-Build-Depends: debhelper (>= 7), cdbs, r-base-dev (>= 2.7.0~20080408)
-Standards-Version: 3.8.2
+Build-Depends: debhelper (>= 7), cdbs, r-base-dev
+Standards-Version: 3.8.3
 Homepage: http://cran.r-project.org/web/packages/qvalue
 Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/R/r-cran-qvalue/trunk/?rev=0&sc=0
 Vcs-Svn: svn://svn.debian.org/svn/debian-med/trunk/packages/R/r-cran-qvalue/trunk/
 
 Package: r-cran-qvalue
 Architecture: all
-Depends: ${shlibs:Depends}, r-base-core (>= 2.7.0~20080408)
+Depends: ${shlibs:Depends}, r-base-core
 Description: GNU R package for Q-value estimation for FDR control
  This package takes a list of p-values resulting from the simultaneous
  testing of many hypotheses and estimates their q-values. The

Modified: trunk/packages/R/r-cran-qvalue/trunk/debian/copyright
===================================================================
--- trunk/packages/R/r-cran-qvalue/trunk/debian/copyright	2009-10-21 12:52:00 UTC (rev 4235)
+++ trunk/packages/R/r-cran-qvalue/trunk/debian/copyright	2009-10-22 00:49:48 UTC (rev 4236)
@@ -4,19 +4,21 @@
 Contact: John D. Storey <jstorey at u.washington.edu>
 Source: http://cran.r-project.org/src/contrib/qvalue_1.18.0.tar.gz
 
+Copyright: Alan Dabney and John D. Storey
 License: LGPL-3+
- This program is free software: you can redistribute it and/or modify
- it under the terms of the GNU Lesser General Public License as published by
- the Free Software Foundation, either version 3 of the License, or
- (at your option) any later version.
- .
- This program is distributed in the hope that it will be useful,
- but WITHOUT ANY WARRANTY; without even the implied warranty of
- MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
- GNU General Public License for more details.
- .
- You should have received a copy of the GNU Lesser General Public License
- along with this program.  If not, see <http://www.gnu.org/licenses/>.
+	
+	This program is free software: you can redistribute it and/or modify
+	it under the terms of the GNU Lesser General Public License as published by
+	the Free Software Foundation, either version 3 of the License, or
+	(at your option) any later version.
+	 
+	This program is distributed in the hope that it will be useful,
+	but WITHOUT ANY WARRANTY; without even the implied warranty of
+	MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+	GNU General Public License for more details.
+	 
+	You should have received a copy of the GNU Lesser General Public License
+	along with this program.  If not, see <http://www.gnu.org/licenses/>.
 
 On a Debian GNU/Linux system, the GNU Lesser GPL license version 3 is included
 in the file ‘/usr/share/common-licenses/LGPL-3’, and the GNU GPL license

Added: trunk/packages/R/r-cran-qvalue/trunk/debian/upstream-metadata.yaml
===================================================================
--- trunk/packages/R/r-cran-qvalue/trunk/debian/upstream-metadata.yaml	                        (rev 0)
+++ trunk/packages/R/r-cran-qvalue/trunk/debian/upstream-metadata.yaml	2009-10-22 00:49:48 UTC (rev 4236)
@@ -0,0 +1,20 @@
+Bioconductor: http://www.bioconductor.org/packages/bioc/html/qvalue.html
+Contact: John D. Storey <jstorey at u.washington.edu>
+CRAN: http://cran.r-project.org/web/packages/qvalue/
+DOI: 10.1073/pnas.1530509100
+Homepage: http://cran.r-project.org/web/packages/qvalue/
+Name: qvalue
+PMID: 12883005
+Reference: |
+ @article{John D.Storey08052003,
+ author = {Storey, John D. and Tibshirani, Robert},
+ title={{Statistical significance for genomewide studies}},
+ journal = {Proceedings of the National Academy of Sciences of the United States of America},
+ volume = {100},
+ number = {16},
+ pages = {9440-9445},
+ doi = {10.1073/pnas.1530509100},
+ year = {2003},
+ URL = {http://www.pnas.org/content/100/16/9440.abstract},
+ eprint = {http://www.pnas.org/content/100/16/9440.full.pdf+html}
+ }

More information about the debian-med-commit mailing list