[med-svn] r4246 - trunk/packages/R/r-cran-rocr/trunk/debian

Sat Oct 24 08:24:23 UTC 2009

Author: plessy
Date: 2009-10-24 08:24:22 +0000 (Sat, 24 Oct 2009)
New Revision: 4246

Added:
   trunk/packages/R/r-cran-rocr/trunk/debian/upstream-metadata.yaml
Modified:
   trunk/packages/R/r-cran-rocr/trunk/debian/changelog
   trunk/packages/R/r-cran-rocr/trunk/debian/compat
   trunk/packages/R/r-cran-rocr/trunk/debian/control
   trunk/packages/R/r-cran-rocr/trunk/debian/copyright
Log:
Rebuilt against R 2.10.0 because of changes in the documentation system, and made various packaging updates:

  * Converted debian/copyright to experimental machine-readable format.
  * Updated to Policy 3.8.3:
    - Changed section to gnu-r (debian/control).
    - Incremented Standards-Version (debian/control).
  * Switched to Debhelper 7 (debian/control, debian/compat).
  * Removed ${shlibs:Depends} and added ${misc:Depends} (debian/compat).
  * Added VCS archive metadata (debian/control).
  * Documented various upstream informations in debian/upstream-metadata.yaml
  * Added myself to the uploaders (debian/control).


Modified: trunk/packages/R/r-cran-rocr/trunk/debian/changelog
===================================================================

--- trunk/packages/R/r-cran-rocr/trunk/debian/changelog	2009-10-23 17:37:34 UTC (rev 4245)
+++ trunk/packages/R/r-cran-rocr/trunk/debian/changelog	2009-10-24 08:24:22 UTC (rev 4246)
@@ -1,3 +1,18 @@
+r-cran-rocr (1.0-2-2) unstable; urgency=low
+
+  * Rebuilt against R 2.10.0 because of changes in the documentation system.
+  * Converted debian/copyright to experimental machine-readable format.
+  * Updated to Policy 3.8.3:
+    - Changed section to gnu-r (debian/control).
+    - Incremented Standards-Version (debian/control).
+  * Switched to Debhelper 7 (debian/control, debian/compat).
+  * Removed ${shlibs:Depends} and added ${misc:Depends} (debian/compat).
+  * Added VCS archive metadata (debian/control).
+  * Documented various upstream informations in debian/upstream-metadata.yaml
+  * Added myself to the uploaders (debian/control).
+
+ -- Charles Plessy <plessy at debian.org>  Sat, 24 Oct 2009 17:04:38 +0900
+
 r-cran-rocr (1.0-2-1.1) unstable; urgency=low
 
   * Non-maintainer upload

Modified: trunk/packages/R/r-cran-rocr/trunk/debian/compat
===================================================================
--- trunk/packages/R/r-cran-rocr/trunk/debian/compat	2009-10-23 17:37:34 UTC (rev 4245)
+++ trunk/packages/R/r-cran-rocr/trunk/debian/compat	2009-10-24 08:24:22 UTC (rev 4246)
@@ -1 +1 @@
-5
+7

Modified: trunk/packages/R/r-cran-rocr/trunk/debian/control
===================================================================
--- trunk/packages/R/r-cran-rocr/trunk/debian/control	2009-10-23 17:37:34 UTC (rev 4245)
+++ trunk/packages/R/r-cran-rocr/trunk/debian/control	2009-10-24 08:24:22 UTC (rev 4246)
@@ -1,15 +1,17 @@
 Source: r-cran-rocr
-Section: math
+Section: gnu-r
 Priority: optional
 Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-Uploaders: Steffen Moeller <moeller at debian.org>
-Build-Depends: debhelper (>= 5.0.0), cdbs, r-base-dev, r-cran-gplots, r-cran-gtools, r-cran-gdata
-Standards-Version: 3.8.0
+Uploaders: Steffen Moeller <moeller at debian.org>, Charles Plessy <plessy at debian.org>
+Build-Depends: debhelper (>= 7), cdbs, r-base-dev, r-cran-gplots, r-cran-gtools, r-cran-gdata
+Standards-Version: 3.8.3
+Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/R/r-cran-rocr/trunk/?rev=0&sc=0
+Vcs-Svn: svn://svn.debian.org/svn/debian-med/trunk/packages/R/r-cran-rocr/trunk/
 Homepage: http://rocr.bioinf.mpi-sb.mpg.de
 
 Package: r-cran-rocr
 Architecture: all
-Depends: ${shlibs:Depends}, r-base-core, r-cran-gplots, r-cran-gtools, r-cran-gdata
+Depends: ${misc:Depends}, r-base-core, r-cran-gplots, r-cran-gtools, r-cran-gdata
 Description: GNU R package to prepare and display ROC curves
  ROC graphs, sensitivity/specificity curves, lift charts,
  and precision/recall plots are popular examples of trade-off

Modified: trunk/packages/R/r-cran-rocr/trunk/debian/copyright
===================================================================
--- trunk/packages/R/r-cran-rocr/trunk/debian/copyright	2009-10-23 17:37:34 UTC (rev 4245)
+++ trunk/packages/R/r-cran-rocr/trunk/debian/copyright	2009-10-24 08:24:22 UTC (rev 4246)
@@ -1,18 +1,43 @@
-The R library ROCR was written by Tobias Sing, Oliver Sander, Niko
-Beerenwinkel, Thomas Lengauer and is maintained by Tobias Sing
-<tobias.sing at mpi-sb.mpg.de>.
+Name      :  ROCR
+Contact   :  Tobias Sing <tobias.sing at mpi-sb.mpg.de>
+Source    :  http://cran.r-project.org/src/contrib/ROCR_1.0-2.tar.gz
 
-This package was created by Steffen Moeller <moeller at debian.org>,
-based on work for the r-cran-rodbc package of Dirk
-Eddelbuettel <edd at debian.org>.
 
-The sources were downloaded from http://cran.r-project.org/src/contrib/.
+Copyright :  © 2005-7 Tobias Sing, Oliver Sander, Niko Beerenwinkel and Thomas Lengauer.
+License   :  GPL-2+
 
+     This is free software; you can redistribute it and/or modify
+     it under the terms of the GNU General Public License as published by
+     the Free Software Foundation; either version 2 of the License, or
+     (at your option) any later version.
+     
+     This program is distributed in the hope that it will be useful,
+     but WITHOUT ANY WARRANTY; without even the implied warranty of
+     MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+     GNU General Public License for more details.
+     
+     You should have received a copy of the GNU General Public License along
+     with this program; if not, write to the Free Software Foundation, Inc.,
+     51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
+
+Comment: Limited warranty
+
+ These datasets and software are provided in good faith, but none of
+ the authors, publishers nor distributors warrant their accuracy
+ nor can be held responsible for the consequences of their use.
+
+On a Debian GNU/Linux system, the GNU General Public License version 2 is
+included in the file ‘/usr/share/common-licenses/GPL-2’.
+
 The package was renamed from its upstream name 'ROCR' to 'r-cran-rocr'
 to highlight the fact that is it a package for R within the CRAN archive
 and the policy to use lower case characters for package names.
 
-Combinat is copyright 2005-6 by the authors and released under the
-GNU General Public License (GPL) version 2 or any later version.
-On a Debian GNU/Linux system, the GPL license is included in the file
-/usr/share/common-licenses/GPL.
+
+Files: debian/*
+Copyright: © 2008 Steffen Moeller <moeller at debian.org>
+License: same as ROCR
+
+This package was created by Steffen Moeller <moeller at debian.org>,
+based on work for the r-cran-rodbc package of Dirk
+Eddelbuettel <edd at debian.org>.

Added: trunk/packages/R/r-cran-rocr/trunk/debian/upstream-metadata.yaml
===================================================================
--- trunk/packages/R/r-cran-rocr/trunk/debian/upstream-metadata.yaml	                        (rev 0)
+++ trunk/packages/R/r-cran-rocr/trunk/debian/upstream-metadata.yaml	2009-10-24 08:24:22 UTC (rev 4246)
@@ -0,0 +1,24 @@
+Contact:
+ - Tobias Sing <tobias.sing at mpi-sb.mpg.de>
+ - Oliver Sander <osander at mpi-sb.mpg.de>
+DOI: 10.1093/bioinformatics/bti623
+Gallery: http://rocr.bioinf.mpi-sb.mpg.de/rocr_gallery.html
+Homepage: http://rocr.bioinf.mpi-sb.mpg.de
+Name: ROCR
+PubMed: 16096348
+Reference: |
+ at article{TobiasSing10152005,
+ author = {Sing, Tobias and Sander, Oliver and Beerenwinkel, Niko and Lengauer, Thomas},
+ title = {{ROCR: visualizing classifier performance in R}},
+ journal = {Bioinformatics},
+ volume = {21},
+ number = {20},
+ pages = {3940-3941},
+ doi = {10.1093/bioinformatics/bti623},
+ year = {2005},
+ URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/21/20/3940},
+ eprint = {http://bioinformatics.oxfordjournals.org/cgi/reprint/21/20/3940.pdf}
+ }
+Screenshot:
+ - http://rocr.bioinf.mpi-sb.mpg.de/plot1.jpg
+ - http://rocr.bioinf.mpi-sb.mpg.de/plot.jpg


