[med-svn] r3862 - trunk/packages/bioperl-run/trunk/debian

Charles Plessy plessy at alioth.debian.org
Thu Sep 3 02:04:07 UTC 2009 

Author: plessy
Date: 2009-09-03 02:04:06 +0000 (Thu, 03 Sep 2009)
New Revision: 3862

Modified:
   trunk/packages/bioperl-run/trunk/debian/changelog
   trunk/packages/bioperl-run/trunk/debian/control
   trunk/packages/bioperl-run/trunk/debian/copyright
   trunk/packages/bioperl-run/trunk/debian/rules
Log:
Disabled the tests for good, updated to latest Policy, and uploaded unpon user request.


Modified: trunk/packages/bioperl-run/trunk/debian/changelog
===================================================================
--- trunk/packages/bioperl-run/trunk/debian/changelog	2009-09-02 21:17:29 UTC (rev 3861)
+++ trunk/packages/bioperl-run/trunk/debian/changelog	2009-09-03 02:04:06 UTC (rev 3862)
@@ -1,7 +1,5 @@
-bioperl-run (1.6.1-1) UNRELEASED; urgency=low
+bioperl-run (1.6.1-1) unstable; urgency=low
 
-  TODO reporducibly disable the tests…
-
   * New upstream release.
   * debian/patches/10-wrong-path-for-interpreter.patch: removed
     (fixed upstream).
@@ -14,12 +12,12 @@
     - Disabled tests as I experience failures with t/Eponine.t despite
       this program is not installed.
   * debian/copyright:
-    - Removed vanity lines about debianization.
+    - Removed vanity lines about debianization and debian copyright.
     - Incremented years to 2009.
-    - Updated to latest version of the machine-readable format.
+    - Updated to latest experimentation of the machine-readable license summary.
   * debian/control:
     - Incremented Standards-Version to reflect conformance on new Policy
-      (no changes needed).
+      (dropped versionned build-dependancy on Perl).
     - Removed build-dependancy on quilt (no patches anymore).
     - Depend and Build-Depend on bioperl versions superior or equal to 1.6.0.
     - Build-depends on, and Recommdnes libalgorithm-diff-perl, libipc-run-perl,
@@ -28,7 +26,7 @@
       (otherwise tests fail). 
     - Depend on amap-align instead of amap (Closes: #541274).
 
- -- Charles Plessy <plessy at debian.org>  Sat, 11 Apr 2009 16:27:56 +0900
+ -- Charles Plessy <plessy at debian.org>  Thu, 03 Sep 2009 11:00:03 +0900
 
 bioperl-run (1.5.2.100-1) unstable; urgency=low
 

Modified: trunk/packages/bioperl-run/trunk/debian/control
===================================================================
--- trunk/packages/bioperl-run/trunk/debian/control	2009-09-02 21:17:29 UTC (rev 3861)
+++ trunk/packages/bioperl-run/trunk/debian/control	2009-09-03 02:04:06 UTC (rev 3862)
@@ -1,20 +1,20 @@
 Source: bioperl-run
 Section: science
 Priority: optional
-Build-Depends: debhelper (>= 7), libmodule-build-perl
-Build-Depends-Indep: perl (>= 5.6.1), bioperl (>= 1.6.0), libalgorithm-diff-perl, libipc-run-perl, libio-string-perl, libxml-twig-perl,
+Build-Depends: debhelper (>= 7.0.50), libmodule-build-perl
+Build-Depends-Indep: perl, bioperl (>= 1.6.0), libalgorithm-diff-perl, libipc-run-perl, libio-string-perl, libxml-twig-perl,
  libarray-compare-perl, libtree-dagnode-perl
 Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
 DM-Upload-Allowed: yes
 Uploaders: Charles Plessy <plessy at debian.org>
-Standards-Version: 3.8.1
+Standards-Version: 3.8.3
 Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/bioperl-run/trunk/?rev=0&sc=0
 Vcs-Svn: svn://svn.debian.org/svn/debian-med/trunk/packages/bioperl-run/trunk/
 Homepage: http://www.bioperl.org/wiki/Run_package
 
 Package: bioperl-run
 Architecture: all
-Depends: perl (>= 5.6.1), ${misc:Depends}, bioperl (>= 1.6.0)
+Depends: ${misc:Depends}, bioperl (>= 1.6.0)
 Recommends: libalgorithm-diff-perl, libipc-run-perl, libio-string-perl, libxml-twig-perl
 Suggests: amap-align, emboss, hmmer, wise, molphy, phylip, clustalw, sim4, t-coffee, blast2, exonerate
 Description: Wrapper modules for BioPerl

Modified: trunk/packages/bioperl-run/trunk/debian/copyright
===================================================================
--- trunk/packages/bioperl-run/trunk/debian/copyright	2009-09-02 21:17:29 UTC (rev 3861)
+++ trunk/packages/bioperl-run/trunk/debian/copyright	2009-09-03 02:04:06 UTC (rev 3862)
@@ -1,7 +1,9 @@
-Name: BioPerl-run
-Maintainer: Bioperl Team <bioperl-l at bioperl.org>
-Source: http://www.bioperl.org/DIST/BioPerl-run-1.6.1.tar.gz
+Machine-readable license summary, see ’http://dep.debian.net/deps/dep5/’.
 
+Name    : BioPerl-run
+Contact : Bioperl Team <bioperl-l at bioperl.org>
+Source  : http://www.bioperl.org/DIST/BioPerl-run-1.6.1.tar.gz
+
 Copyright: 1997-2009 Bioperl Team <bioperl-l at bioperl.org>
  Sendu Bala <bix at sendu.me.uk>
  Jer-Ming Chia <giscjm at nus.edu.sg>
@@ -27,47 +29,46 @@
  Tiequan Zhang <tqzhang1973 at yahoo.com>
  Juguang Xiao <juguang at tll.org.sg>
 License: Perl
- Everyone can use it! We don't care if you are academic, corporate, or
- government. BioPerl is licensed under the same terms as Perl itself, which
- means it is dually-licensed under either the Artistic or GPL licenses. The Perl
- Artistic License, or the GNU GPL covers all the legalese and what you can and
- can't do with the source code.
- .
- We do appreciate:
- .
-  * You letting us know you sell or use a product that uses BioPerl. This helps
-    us show people how useful our toolkit is. It also helps us if we seek funding
-    from a government source, to identify the utility of the code to many different
-    groups of users. Add your project and institution to our BioPerl Users page.
- .
-  * If you fix bugs, please let us know about them. Because Bioperl is
-    dual-licensed under the GPL or Artistic licenses, you can choose the Artistic
-    license, which means that you are not required to submit the code fixes, but in
-    the spirit of making a better product we hope you'll contribute back to the
-    community any insight or code improvements.
- . 
-  * Please include the AUTHORS file and ascribe credit to the original BioPerl
-    toolkit where appropriate.
- . 
-  * If you are an academic and you use the software, please cite the article.
-    See the BioPerl publications for a list of papers which describe components in
-    the toolkit. 
-Comment: see http://www.bioperl.org/wiki/Licensing_BioPerl
+	
+	Everyone can use it! We don't care if you are academic, corporate, or
+	government. BioPerl is licensed under the same terms as Perl itself, which
+	means it is dually-licensed under either the Artistic or GPL licenses. The Perl
+	Artistic License, or the GNU GPL covers all the legalese and what you can and
+	can't do with the source code.
+	
+	We do appreciate:
+	
+	 * You letting us know you sell or use a product that uses BioPerl. This helps
+	   us show people how useful our toolkit is. It also helps us if we seek funding
+	   from a government source, to identify the utility of the code to many different
+	   groups of users. Add your project and institution to our BioPerl Users page.
+	
+	 * If you fix bugs, please let us know about them. Because Bioperl is
+	   dual-licensed under the GPL or Artistic licenses, you can choose the Artistic
+	   license, which means that you are not required to submit the code fixes, but in
+	   the spirit of making a better product we hope you'll contribute back to the
+	   community any insight or code improvements.
+	 
+	 * Please include the AUTHORS file and ascribe credit to the original BioPerl
+	   toolkit where appropriate.
+	
+	 * If you are an academic and you use the software, please cite the article.
+	   See the BioPerl publications for a list of papers which describe components in
+	   the toolkit. 
 
+See http://www.bioperl.org/wiki/Licensing_BioPerl
+
 License: Perl
  This program is free software; you can redistribute it and/or modify
  it under the terms of either:
- .
+ 
  a) the GNU General Public License as published by the Free Software
     Foundation; either version 1, or (at your option) any later
     version, or
- .
+ 
  b) the "Artistic License" which comes with Perl.
-Comment: On Debian systems, the complete text of the Artistic License can be
- found in `/usr/share/common-licenses/Artistic', and the complete text of the
- GNU General Public License can be found in `/usr/share/common-licenses/GPL'.
 
-Files: debian/*
-Copyright: 2009 Charles Plessy <plessy at debian.org>
-License: Same as BioPerl itself
- (see above)
+On Debian systems, the complete text of the Artistic License can be found in
+‘/usr/share/common-licenses/Artistic’, and the complete text of the latest
+version of the GNU General Public License can be found in
+‘/usr/share/common-licenses/GPL’.

Modified: trunk/packages/bioperl-run/trunk/debian/rules
===================================================================
--- trunk/packages/bioperl-run/trunk/debian/rules	2009-09-02 21:17:29 UTC (rev 3861)
+++ trunk/packages/bioperl-run/trunk/debian/rules	2009-09-03 02:04:06 UTC (rev 3862)
@@ -2,9 +2,12 @@
 
 build: build-stamp
 build-stamp:
-	DEB_BUILD_OPTIONS="$$DEB_BUILD_OPTIONS nocheck" dh build
+	dh build
 	touch $@
 
+# Test suite is failing on buildds because it does not detect correctly the absence of the Eponine program.
+override_dh_auto_test:
+
 clean:
 	dh $@

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