[med-svn] r3969 - trunk/packages/samtools/trunk/debian

[Charles Plessy]

Author: plessy
Date: 2009-09-14 13:17:11 +0000 (Mon, 14 Sep 2009)
New Revision: 3969

Added:
   trunk/packages/samtools/trunk/debian/README.source
   trunk/packages/samtools/trunk/debian/gbp.conf
Modified:
   trunk/packages/samtools/trunk/debian/changelog
   trunk/packages/samtools/trunk/debian/copyright
   trunk/packages/samtools/trunk/debian/watch
Log:
Uploaded after removing the directory containing non-DFSG-free files.

  * Upstream sources repackaged to remove the win32 directory:
    - The removal was done with git-import-orig in a parallel Git repository,
      and the corresponding debian/gbp.conf file was added to this package.
    - Mangled the ~dfsg string of the Debian version in debian/watch.
    - Added a debian/README.source file and explanations in debian/copyright.


Added: trunk/packages/samtools/trunk/debian/README.source
===================================================================
--- trunk/packages/samtools/trunk/debian/README.source	                        (rev 0)
+++ trunk/packages/samtools/trunk/debian/README.source	2009-09-14 13:17:11 UTC (rev 3969)
@@ -0,0 +1,5 @@
+The original sources of Samtools were modified by removing the win32 directory.
+This was done using the git-import-orig program from the git-buildpackage
+utilities. This source package is currently migrated from svn-buildpackage to
+git-buildpackage, and a get-orig-source target for debian/rules will be added
+later.

Modified: trunk/packages/samtools/trunk/debian/changelog
===================================================================
--- trunk/packages/samtools/trunk/debian/changelog	2009-09-14 07:14:59 UTC (rev 3968)
+++ trunk/packages/samtools/trunk/debian/changelog	2009-09-14 13:17:11 UTC (rev 3969)
@@ -1,12 +1,14 @@
-samtools (0.1.6-1) UNRELEASED; urgency=low
+samtools (0.1.6~dfsg-1) unstable; urgency=low
 
-NON-FREE FILES DETECTED (win32/*a). Do not upload without removing or getting a
-green light from our archive administrators.
+  * New upstream release.
+  * Upstream sources repackaged to remove the win32 directory:
+    - The removal was done with git-import-orig in a parallel Git repository,
+      and the corresponding debian/gbp.conf file was added to this package.
+    - Mangled the ~dfsg string of the Debian version in debian/watch.
+    - Added a debian/README.source file and explanations in debian/copyright.
 
-  * New upstream release (Closes: #545758).
+ -- Charles Plessy <plessy at debian.org>  Mon, 14 Sep 2009 21:58:36 +0900
 
- -- Charles Plessy <plessy at debian.org>  Mon, 07 Sep 2009 20:13:44 +0900
-
 samtools (0.1.5c-2) unstable; urgency=low
 
   * Rebuilt with -fPIC (debian/rules, README.Debian).

Modified: trunk/packages/samtools/trunk/debian/copyright
===================================================================
--- trunk/packages/samtools/trunk/debian/copyright	2009-09-14 07:14:59 UTC (rev 3968)
+++ trunk/packages/samtools/trunk/debian/copyright	2009-09-14 13:17:11 UTC (rev 3969)
@@ -1,9 +1,11 @@
 Machine-readable license summary, see ‘http://dep.debian.net/deps/dep5/’.
 
+
 Name      :  SAMtools
 Contact   :  SAMtools mailing list <samtools-help at lists.sourceforge.net>
 Source    :  http://qa.debian.org/watch/sf.php/samtools/samtools-0.1.6.tar.bz2
 
+
 Copyright :  © 2008–2009, Genome Research Ltd.
 License   :  MIT
 	
@@ -29,6 +31,7 @@
 Copyright :  © 2008 Broad Institute / Massachusetts Institute of Technology
 License   :  MIT
 
+
 Files     :  razf.*
 Name      :  RAZF : Random Access compressed(Z) File
 Copyright :  2008, Jue Ruan <ruanjue at gmail.com>, Heng Li <lh3 at sanger.ac.uk>
@@ -73,3 +76,11 @@
 	MD5Context structure, pass it to MD5Init, call MD5Update as
 	needed on buffers full of bytes, and then call MD5Final, which
 	will fill a supplied 16-byte array with the digest.
+
+
+Files     :  win32/*
+Removed   :  Missing source.
+	
+	The win32 directory is present in the original upstream sources, but
+	was removed from the Debian source package, as it contains binary files for the
+	win32 platform without their corresponding source files.

Added: trunk/packages/samtools/trunk/debian/gbp.conf
===================================================================
--- trunk/packages/samtools/trunk/debian/gbp.conf	                        (rev 0)
+++ trunk/packages/samtools/trunk/debian/gbp.conf	2009-09-14 13:17:11 UTC (rev 3969)
@@ -0,0 +1,6 @@
+[DEFAULT]
+pristine-tar = True
+filter-pristine-tar = True
+filter = [
+    "win32"
+    ]

Modified: trunk/packages/samtools/trunk/debian/watch
===================================================================
--- trunk/packages/samtools/trunk/debian/watch	2009-09-14 07:14:59 UTC (rev 3968)
+++ trunk/packages/samtools/trunk/debian/watch	2009-09-14 13:17:11 UTC (rev 3969)
@@ -1,2 +1,3 @@
 version=3
-http://sf.net/samtools/samtools-([\d\.]*)\.tar\.bz2
+opts=dversionmangle=s/~dfsg// \
+  http://sf.net/samtools/samtools-([\d\.]*)\.tar\.bz2