[med-svn] r4002 - trunk/packages/bioperl/trunk/debian

[Charles Plessy]

Author: plessy
Date: 2009-09-18 11:45:34 +0000 (Fri, 18 Sep 2009)
New Revision: 4002

Added:
   trunk/packages/bioperl/trunk/debian/upstream-metadata.yaml
Modified:
   trunk/packages/bioperl/trunk/debian/changelog
   trunk/packages/bioperl/trunk/debian/control
Log:
Update adding missing dependancies and metadata for experimental purposes.

  * debian/control:
    - Added libdata-stag-perl in bioperl?\226?\128?\153s Depends field, since it is
      required in Build.PL.
    - Added libxml-simple-perl in bioperl?\226?\128?\153s Recommends and Build-Depends
      fields, since they are listed in DEPENDENCIES.
    - Incremented Standards-Version to reflect conformance with Policy 3.8.3
      (no changes needed).


Modified: trunk/packages/bioperl/trunk/debian/changelog
===================================================================
--- trunk/packages/bioperl/trunk/debian/changelog	2009-09-18 11:06:19 UTC (rev 4001)
+++ trunk/packages/bioperl/trunk/debian/changelog	2009-09-18 11:45:34 UTC (rev 4002)
@@ -1,10 +1,20 @@
-bioperl (1.6.0-3) UNRELEASED; urgency=low
+bioperl (1.6.0-3) unstable; urgency=low
 
   [ David Paleino ]
   * Removed myself from Uploaders
 
- -- Debian-Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>  Tue, 05 May 2009 21:03:47 +0200
+  [ Charles Plessy ]
+  * debian/control:
+    - Added libdata-stag-perl in bioperl’s Depends field, since it is
+      required in Build.PL.
+    - Added libxml-simple-perl in bioperl’s Recommends and Build-Depends
+      fields, since they are listed in DEPENDENCIES.
+    - Incremented Standards-Version to reflect conformance with Policy 3.8.3
+      (no changes needed).
+  * Collected some informations in debian/upstream-metadata.yaml.
 
+ -- Charles Plessy <plessy at debian.org>  Fri, 18 Sep 2009 20:23:51 +0900
+
 bioperl (1.6.0-2) unstable; urgency=low
 
   * Removed patch system (not used):

Modified: trunk/packages/bioperl/trunk/debian/control
===================================================================
--- trunk/packages/bioperl/trunk/debian/control	2009-09-18 11:06:19 UTC (rev 4001)
+++ trunk/packages/bioperl/trunk/debian/control	2009-09-18 11:45:34 UTC (rev 4002)
@@ -34,15 +34,18 @@
  libxml-twig-perl,
  libxml-writer-perl,
  libxml-libxml-perl,
- libwww-perl
-Standards-Version: 3.8.0
+ libwww-perl,
+# listed in DEPENDANCIES, and used – but not needed – by the tests.
+# bioperl-ext,
+ libxml-simple-perl
+Standards-Version: 3.8.3
 Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/bioperl/trunk/?rev=0&sc=0
 Vcs-Svn: svn://svn.debian.org/svn/debian-med/trunk/packages/bioperl/trunk/
 Homepage: http://www.bioperl.org/
 
 Package: bioperl
 Architecture: all
-Depends: libio-string-perl, ${perl:Depends}
+Depends: libio-string-perl, libdata-stag-perl, ${perl:Depends}
 Recommends: bioperl-run ( >= 1.6.0 ),
 # Recommended in Build.PL
  libace-perl,
@@ -69,7 +72,10 @@
  libxml-twig-perl,
  libxml-writer-perl,
  libxml-libxml-perl,
- libwww-perl
+ libwww-perl,
+# listed in DEPENDANCIES, and used – but not needed – by the tests.
+# bioperl-ext,
+ libxml-simple-perl
 Suggests: libmath-random-perl
 # libmath-random-perl is non-free.
 Description: Perl tools for computational molecular biology

Added: trunk/packages/bioperl/trunk/debian/upstream-metadata.yaml
===================================================================
--- trunk/packages/bioperl/trunk/debian/upstream-metadata.yaml	                        (rev 0)
+++ trunk/packages/bioperl/trunk/debian/upstream-metadata.yaml	2009-09-18 11:45:34 UTC (rev 4002)
@@ -0,0 +1,21 @@
+Bugtracker: http://bugzilla.open-bio.org/
+DOI: 10.1101/gr.361602
+Homepage: http://www.bioperl.org/
+PubMed: 12368254
+Reference: |
+ @article{bioperl:2002,
+   author={J.E. Stajich and D. Block and K. Boulez and S.E. Brenner
+ 	and S.A. Chervitz and C. Dagdigian and G. Fuellen and J.G. Gilbert
+ 	and I. Korf and H. Lapp and H. Lehvaslaiho and C. Matsalla and
+ 	C.J. Mungall and B.I. Osborne and M.R. Pocock and P. Schattner and
+ 	M. Senger and L.D. Stein and E. Stupka and M.D. Wilkinson and E. Birney},
+   title="The Bioperl toolkit: Perl modules for the life sciences.",
+   journal="Genome Res.",
+   year=2002,
+   volume=12,
+   number=10,
+   pages="1611-1618",
+   doi={10.1101/gr.361602},
+   pmid="12368254"
+ }
+Repository: svn://code.open-bio.org/bioperl/bioperl-live/