[med-svn] r4032 - trunk/packages/infernal/trunk/debian

Andreas Tille tille at alioth.debian.org
Sat Sep 26 07:50:41 UTC 2009


Author: tille
Date: 2009-09-26 07:50:40 +0000 (Sat, 26 Sep 2009)
New Revision: 4032

Added:
   trunk/packages/infernal/trunk/debian/infernal.install
Modified:
   trunk/packages/infernal/trunk/debian/changelog
   trunk/packages/infernal/trunk/debian/rules
Log:
Rewritten debian/rules to short dh version; install src/{trcyk,truncyk_check} to /usr/bin - Steffen, could you please comment on this whether leaving these binaries out or are they new?


Modified: trunk/packages/infernal/trunk/debian/changelog
===================================================================
--- trunk/packages/infernal/trunk/debian/changelog	2009-09-26 07:05:38 UTC (rev 4031)
+++ trunk/packages/infernal/trunk/debian/changelog	2009-09-26 07:50:40 UTC (rev 4032)
@@ -11,7 +11,7 @@
     - s/Debian-Med/Debian Med/
     - Build-Depends: debhelper (>= 7.1) autotools-dev
     - Package: infernal-doc
-  * debian/rules: removed deprecated -k option from dh_clean
+  * debian/rules rewritten to make use of short dh
   * debian/copyright:
     - added myself to Copyright holders of debian/*
     - squid is not part of the upstream tarball anymore so this
@@ -19,6 +19,8 @@
     - files/Userguide.pdf: Copied comment about PDF = source from
       README.Debian
   * debian/infernal-doc.doc-base
+  * debian/infernal.install: install src/{trcyk,truncyk_check} to
+    /usr/bin
 
  -- Andreas Tille <tille at debian.org>  Fri, 25 Sep 2009 15:17:22 +0200
 

Added: trunk/packages/infernal/trunk/debian/infernal.install
===================================================================
--- trunk/packages/infernal/trunk/debian/infernal.install	                        (rev 0)
+++ trunk/packages/infernal/trunk/debian/infernal.install	2009-09-26 07:50:40 UTC (rev 4032)
@@ -0,0 +1,3 @@
+src/trcyk         usr/bin
+src/truncyk_check usr/bin
+

Modified: trunk/packages/infernal/trunk/debian/rules
===================================================================
--- trunk/packages/infernal/trunk/debian/rules	2009-09-26 07:05:38 UTC (rev 4031)
+++ trunk/packages/infernal/trunk/debian/rules	2009-09-26 07:50:40 UTC (rev 4032)
@@ -1,146 +1,17 @@
 #!/usr/bin/make -f
 # -*- makefile -*-
-# Sample debian/rules that uses debhelper.
-#
-# This file was originally written by Joey Hess and Craig Small.
-# As a special exception, when this file is copied by dh-make into a
-# dh-make output file, you may use that output file without restriction.
-# This special exception was added by Craig Small in version 0.37 of dh-make.
-#
-# Modified to make a template file for a multi-binary package with separated
-# build-arch and build-indep targets  by Bill Allombert 2001
 
-# Uncomment this to turn on verbose mode.
-#export DH_VERBOSE=1
+%:
+	dh $@
 
-# This has to be exported to make some magic below work.
-export DH_OPTIONS
-
-# These are used for cross-compiling and for saving the configure script
-# from having to guess our platform (since we know it already)
-DEB_HOST_GNU_TYPE   ?= $(shell dpkg-architecture -qDEB_HOST_GNU_TYPE)
-DEB_BUILD_GNU_TYPE  ?= $(shell dpkg-architecture -qDEB_BUILD_GNU_TYPE)
-
-
-CFLAGS = -Wall -g
-
-ifneq (,$(findstring noopt,$(DEB_BUILD_OPTIONS)))
-	CFLAGS += -O0
-else
-	CFLAGS += -O2
-endif
-
-config.status: configure
-	dh_testdir
-	# Add here commands to configure the package.
-ifneq "$(wildcard /usr/share/misc/config.sub)" ""
-	cp -f /usr/share/misc/config.sub config.sub
-endif
-ifneq "$(wildcard /usr/share/misc/config.guess)" ""
-	cp -f /usr/share/misc/config.guess config.guess
-endif
-	./configure --host=$(DEB_HOST_GNU_TYPE) --build=$(DEB_BUILD_GNU_TYPE) --prefix=/usr --pdfdir=\$${prefix}/share/doc/infernal --mandir=\$${prefix}/share/man --infodir=\$${prefix}/share/info CFLAGS="$(CFLAGS)" LDFLAGS="-Wl,-z,defs"
-
-
-#Architecture 
-build: build-arch build-indep
-
-build-arch: build-arch-stamp
-build-arch-stamp:  config.status
-
-	# Add here commands to compile the arch part of the package.
-	$(MAKE) 
-	touch $@
-
-build-indep: build-indep-stamp
-build-indep-stamp:  config.status
-	# Add here commands to compile the indep part of the package.
-	#$(MAKE) doc
-	touch $@
-
-clean:
-	dh_testdir
-	dh_testroot
-	rm -f build-arch-stamp build-indep-stamp #CONFIGURE-STAMP#
-	# Add here commands to clean up after the build process.
+override_dh_auto_clean:
 	if [ -r Makefile ]; then $(MAKE) distclean; fi
-	rm -f config.sub config.guess
-	dh_clean cm*.1 */*.log *.log */Makefile Makefile documentation/manpages/*.1
+	dh_clean *.1 */*.log *.log */Makefile Makefile documentation/manpages/*.1
 
-install: install-indep install-arch
-install-indep:
-	#dh_testdir
-	#dh_testroot
-	#dh_clean -i 
-	#dh_installdirs -i
-	# Add here commands to install the indep part of the package into
-	# debian/<package>-doc.
-	#INSTALLDOC#
-	#dh_install -i
+override_dh_auto_install:
+        $(MAKE) install PREFIX=`pwd`/debian/tmp
 
-cm2hmm.1:
-	for i in documentation/manpages/*.man ; \
-	do \
-		m=`basename $$i .man`.1 ; \
-		cp $$i $$m; \
-	done 
-
-install-arch: cm2hmm.1
-	dh_testdir
-	dh_testroot
-	dh_clean -s 
-	dh_installdirs -s
-
-	# Add here commands to install the arch part of the package into 
-	# debian/tmp.
-	$(MAKE) prefix=$(CURDIR)/debian/infernal/usr install
-
-	dh_install -s
-# Must not depend on anything. This is to be called by
-# binary-arch/binary-indep
-# in another 'make' thread.
-binary-common:
-	dh_testdir
-	dh_testroot
-	dh_installchangelogs 
-	dh_installdocs
-	dh_installexamples intro
-	dh_installman *.1
-	dh_link
-	dh_strip
-	dh_compress 
-	dh_fixperms
-#	dh_perl
-	dh_makeshlibs
-	dh_installdeb
-	dh_shlibdeps
-	dh_gencontrol
-	dh_md5sums
-	dh_builddeb
-
-# Build architecture independant packages using the common target.
-binary-indep: build-indep install-indep
-	#$(MAKE) -f debian/rules DH_OPTIONS=-i binary-common
-
-# Build architecture dependant packages using the common target.
-binary-arch: build-arch install-arch
-	$(MAKE) -f debian/rules DH_OPTIONS=-s binary-common
-
 get-orig-source:
-	VERSION=`head -1 debian/changelog  | cut -f1 -d- | cut -f2 -d\( | tr -d '\n'` ; \
-	URL="ftp://selab.janelia.org/pub/software/infernal/infernal.tar.gz"; \
-	cd ..; \
-	wget -nc $$URL && tar xzvf infernal.tar.gz; \
-	p=`pwd`; \
-	if [ -d infernal-$$VERSION ]; then \
-		cd infernal-$$VERSION && rm -rf ./easel/documentation Userguide.pdf ; \
-	else \
-		echo "Please check debian/changelog, the version you have downloaded is apparently newer than expected." ; \
-		exit -1 ; \
-	fi; \
-	cd $$p ; \
-	tar czvf infernal_$${VERSION}.orig.tar.gz infernal-$$VERSION && rm -rf infernal-$$VERSION
-
-
-binary: binary-arch
-.PHONY: build clean binary-indep binary-arch binary install install-indep install-arch 
+	VERSION=`dpkg-parsechangelog | grep Ver | cut -d' ' -f2 | cut -d- -f1` ; \
+	URL="ftp://selab.janelia.org/pub/software/infernal/infernal-$${VERSION}.tar.gz"; \
+	ln -s infernal-$${VERSION}.tar.gz infernal_$${VERSION}.orig.tar.gz




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