[med-svn] r4730 - trunk/packages/R/r-cran-catools/trunk/debian
Charles Plessy
plessy at alioth.debian.org
Mon Apr 12 16:00:56 UTC 2010
Author: plessy
Date: 2010-04-12 16:00:51 +0000 (Mon, 12 Apr 2010)
New Revision: 4730
Modified:
trunk/packages/R/r-cran-catools/trunk/debian/
trunk/packages/R/r-cran-catools/trunk/debian/README.Debian
trunk/packages/R/r-cran-catools/trunk/debian/changelog
trunk/packages/R/r-cran-catools/trunk/debian/compat
trunk/packages/R/r-cran-catools/trunk/debian/control
trunk/packages/R/r-cran-catools/trunk/debian/copyright
trunk/packages/R/r-cran-catools/trunk/debian/rules
Log:
Uploaded new upstream version, with a lot of packaging updates.
* Team upload (Closes: #577296).
* New upstream version.
* Update to Policy 3.8.4:
- Changed section to ?\226?\128?\152gnu-r?\226?\128?\153 (debian/control).
- Incremented Standards-Version (debian/control).
* Collaborative Debian Med maintenance (debian/control):
- Set our mailing list as Maintainer, move Steffen to Uploaders.
- Allow upload by Debian Maintainers.
* Switched to Debhelper 7 (debian/control, debian/compat).
* Depend on a version equal or superior than the R upstream release that
was used to build this package, using a R:Depends substvar
debian/control, debian/rules).
* Removed mentions of copyright notices that do not exist anymore in
the upstream code (debian/copyright, debian/README.Debian).
* Added notes to explain how this package is tested (debian/README.Debian).
Property changes on: trunk/packages/R/r-cran-catools/trunk/debian
___________________________________________________________________
Added: mergeWithUpstream
+ 1
Modified: trunk/packages/R/r-cran-catools/trunk/debian/README.Debian
===================================================================
--- trunk/packages/R/r-cran-catools/trunk/debian/README.Debian 2010-04-12 04:43:50 UTC (rev 4729)
+++ trunk/packages/R/r-cran-catools/trunk/debian/README.Debian 2010-04-12 16:00:51 UTC (rev 4730)
@@ -1,12 +1,7 @@
-The caBIO Software License was found by our FTP-Master Joerg
-for file R/zzz.R and it could be read on
+Notes on how this package is tested.
+────────────────────────────────────
-http://ncicb.nci.nih.gov/content/ncicblfs/mageom_JavaDocs/api/gov/nih/nci/mageom/bean/IdentifiableImpl.html
+After building on the maintainer's computer, this package was locally installed
+and the library loaded into R in order to confirm its integrity.
-Sadly, the advertising clause of that license renders this package non-free.
-Upstream was contacted and asked to review the license.
-
-Steffen
-
- -- Sun, 06 Jul 2008 00:33:33 +0200
-
+ -- Charles Plessy <plessy at debian.org> Mon, 12 Apr 2010 10:00:55 +0900
Modified: trunk/packages/R/r-cran-catools/trunk/debian/changelog
===================================================================
--- trunk/packages/R/r-cran-catools/trunk/debian/changelog 2010-04-12 04:43:50 UTC (rev 4729)
+++ trunk/packages/R/r-cran-catools/trunk/debian/changelog 2010-04-12 16:00:51 UTC (rev 4730)
@@ -1,3 +1,23 @@
+catools (1.10-1) unstable; urgency=low
+
+ * Team upload (Closes: #577296).
+ * New upstream version.
+ * Update to Policy 3.8.4:
+ - Changed section to ‘gnu-r’ (debian/control).
+ - Incremented Standards-Version (debian/control).
+ * Collaborative Debian Med maintenance (debian/control):
+ - Set our mailing list as Maintainer, move Steffen to Uploaders.
+ - Allow upload by Debian Maintainers.
+ * Switched to Debhelper 7 (debian/control, debian/compat).
+ * Depend on a version equal or superior than the R upstream release that
+ was used to build this package, using a R:Depends substvar
+ debian/control, debian/rules).
+ * Removed mentions of copyright notices that do not exist anymore in
+ the upstream code (debian/copyright, debian/README.Debian).
+ * Added notes to explain how this package is tested (debian/README.Debian).
+
+ -- Charles Plessy <plessy at debian.org> Mon, 12 Apr 2010 10:02:22 +0900
+
catools (1.9-1) unstable; urgency=low
* New upstream version.
Modified: trunk/packages/R/r-cran-catools/trunk/debian/compat
===================================================================
--- trunk/packages/R/r-cran-catools/trunk/debian/compat 2010-04-12 04:43:50 UTC (rev 4729)
+++ trunk/packages/R/r-cran-catools/trunk/debian/compat 2010-04-12 16:00:51 UTC (rev 4730)
@@ -1 +1 @@
-5
+7
Modified: trunk/packages/R/r-cran-catools/trunk/debian/control
===================================================================
--- trunk/packages/R/r-cran-catools/trunk/debian/control 2010-04-12 04:43:50 UTC (rev 4729)
+++ trunk/packages/R/r-cran-catools/trunk/debian/control 2010-04-12 16:00:51 UTC (rev 4730)
@@ -1,16 +1,18 @@
Source: catools
-Section: math
+Section: gnu-r
Priority: optional
-Maintainer: Steffen Moeller <moeller at debian.org>
-Build-Depends: debhelper (>> 4.1.0), r-base-dev (>= 2.6.2), r-cran-bitops, cdbs
-Standards-Version: 3.8.0
+Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+DM-Upload-Allowed: yes
+Uploaders: Steffen Moeller <moeller at debian.org>
+Build-Depends: debhelper (>= 7), r-base-dev, r-cran-bitops, cdbs
+Standards-Version: 3.8.4
Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/R/r-cran-catools/trunk/?rev=0&sc=0
Vcs-Svn: svn://svn.debian.org/svn/debian-med/trunk/packages/R/r-cran-catools/trunk/
Homepage: http://cran.r-project.org/web/packages/caTools/
Package: r-cran-catools
Architecture: any
-Depends: r-base-core (>= 2.6.2), r-cran-bitops, ${shlibs:Depends}
+Depends: ${R:Depends}, r-cran-bitops, ${shlibs:Depends}
Suggests: r-cran-mass, r-cran-rpart
Description: GNU R package providing various utility functions
The packages features several basic utility functions including:
Modified: trunk/packages/R/r-cran-catools/trunk/debian/copyright
===================================================================
--- trunk/packages/R/r-cran-catools/trunk/debian/copyright 2010-04-12 04:43:50 UTC (rev 4729)
+++ trunk/packages/R/r-cran-catools/trunk/debian/copyright 2010-04-12 16:00:51 UTC (rev 4730)
@@ -4,20 +4,32 @@
Parts of the code were adopted from earlier work of David Koblas.
This package was created by Steffen Moeller <moeller at debian.org> following
-a template of Dirk Eddelbuettel <edd at debian.org>. The sources were
-downloaded from
- http://cran.us.r-project.org/src/contrib/
+a template of Dirk Eddelbuettel <edd at debian.org>.
The package was renamed from its upstream name 'caTools' to
'r-cran-catools' to fit the pattern of CRAN (and non-CRAN) packages for
R.
-Copyright (C) 2005 - 2007 Jarek Tuszynski
+Source: http://cran.r-project.org/src/contrib/caTools_1.10.tar.gz
+Copyright: © 2005 - 2009 Jarek Tuszynski
License: GPLv3
+
+ This program is free software: you can redistribute it and/or modify
+ it under the terms of the GNU General Public License as published by
+ the Free Software Foundation, either version 3 of the License, or
+ (at your option) any later version.
+
+ This program is distributed in the hope that it will be useful,
+ but WITHOUT ANY WARRANTY; without even the implied warranty of
+ MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ GNU General Public License for more details.
+
+ You should have received a copy of the GNU General Public License
+ along with this program. If not, see <http://www.gnu.org/licenses/>
-On a Debian GNU/Linux system, the GPL license is included in the file
-/usr/share/common-licenses/GPL.
+On a Debian GNU/Linux system, the GPL license version 3 is included in the file
+‘/usr/share/common-licenses/GPL-3’.
A fraction of the code in GifTools.cpp contained the following message:
@@ -34,63 +46,3 @@
copyright notice and this permission notice appear in supporting
documentation. This software is provided "as is" without express or
implied warranty."
-
-The file R/zzz.R states
-
- Written by Jarek Tuszynski. Copyright 2001-2003 SAIC.
- Software developed in conjunction with the National Cancer Institute, and
- distributed under "caBIO Software License" included in "COPYING" file.
-
-and albeit that COPYING file is not part of the package, an internet search found the following:
-
- The caBIO Software License, Version 1.0 Copyright 2001 SAIC. This
- software was developed in conjunction with the National Cancer
- Institute, and so to the extent government employees are co-authors,
- any rights in such works shall be subject to Title 17 of the United
- States Code, section 105. Redistribution and use in source and binary
- forms, with or without modification, are permitted provided that the
- following conditions are met: 1. Redistributions of source code must
- retain the above copyright notice, this list of conditions and the
- disclaimer of Article 3, below. Redistributions in binary form must
- reproduce the above copyright notice, this list of conditions and the
- following disclaimer in the documentation and/or other materials
- provided with the distribution. 2. The end-user documentation
- included with the redistribution, if any, must include the following
- acknowledgment: "This product includes software developed by
- the SAIC and the National Cancer Institute." If no such end-user
- documentation is to be included, this acknowledgment shall appear
- in the software itself, wherever such third-party acknowledgments
- normally appear. 3. The names "The National Cancer Institute",
- "NCI" and "SAIC" must not be used to endorse or promote products
- derived from this software. 4. This license does not authorize the
- incorporation of this software into any proprietary programs. This
- license does not authorize the recipient to use any trademarks owned
- by either NCI or SAIC-Frederick. 5. THIS SOFTWARE IS PROVIDED "AS
- IS," AND ANY EXPRESSED OR IMPLIED WARRANTIES, (INCLUDING, BUT NOT
- LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR
- A PARTICULAR PURPOSE) ARE DISCLAIMED. IN NO EVENT SHALL THE NATIONAL
- CANCER INSTITUTE, SAIC, OR THEIR AFFILIATES BE LIABLE FOR ANY DIRECT,
- INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
- (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
- SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION)
- HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT,
- STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING
- IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE
- POSSIBILITY OF SUCH DAMAGE.
-
-For reference, the upstream DESCRIPTION file is included below:
-
- Package: caTools
- Version: 1.8
- Date: Oct 31 2007
- Title: Tools: moving window statistics, GIF, Base64, ROC AUC, etc.
- Author: Jarek Tuszynski <jaroslaw.w.tuszynski at saic.com>
- Maintainer: Jarek Tuszynski <jaroslaw.w.tuszynski at saic.com>
- Depends: R (>= 2.2.0), bitops
- Suggests: MASS, rpart
- Description: Contains several basic utility functions including:
- moving (rolling, running) window statistic functions, read/write for GIF
- and ENVI binary files, fast calculation of AUC, LogitBoost classifier, base64
- encoder/decoder, round-off error free sum and cumsum, etc.
- License: GPL version 2 or later
- Packaged: Tue Oct 9 10:43:05 2007; tuszynskij
Modified: trunk/packages/R/r-cran-catools/trunk/debian/rules
===================================================================
--- trunk/packages/R/r-cran-catools/trunk/debian/rules 2010-04-12 04:43:50 UTC (rev 4729)
+++ trunk/packages/R/r-cran-catools/trunk/debian/rules 2010-04-12 16:00:51 UTC (rev 4730)
@@ -7,3 +7,7 @@
clean::
rm -f src/caTools.so
+
+# Depend on a version equal or superior than the R upstream release that was used to build this package.
+install/r-$(debRreposname)-$(cranName)::
+ echo "R:Depends=r-base-core (>= $(shell R --version | head -n1 | perl -ne 'print / +([0-9]\.[0-9]+\.[0-9])/')~)" >> debian/r-$(debRreposname)-$(cranName).substvars
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