[med-svn] r5207 - trunk/packages/ensembl/ensembl/57/debian

Tue Aug 31 22:10:57 UTC 2010

Author: moeller
Date: 2010-08-31 22:10:44 +0000 (Tue, 31 Aug 2010)
New Revision: 5207

Added:
   trunk/packages/ensembl/ensembl/57/debian/ensembl-doc.doc-base.EX
Removed:
   trunk/packages/ensembl/ensembl/57/debian/ensembl.doc-base.EX
Modified:
   trunk/packages/ensembl/ensembl/57/debian/README.source
   trunk/packages/ensembl/ensembl/57/debian/changelog
   trunk/packages/ensembl/ensembl/57/debian/copyright
Log:
Added developers found in source code to 
list of developers. This is yet incomplete, though.


Modified: trunk/packages/ensembl/ensembl/57/debian/README.source
===================================================================

--- trunk/packages/ensembl/ensembl/57/debian/README.source	2010-08-31 21:20:22 UTC (rev 5206)
+++ trunk/packages/ensembl/ensembl/57/debian/README.source	2010-08-31 22:10:44 UTC (rev 5207)
@@ -10,3 +10,8 @@
 Depending on the nature of the change to upstream, its may
 be either implemented as a quilt patch in debian/patches
 or be performed in debian/rules.
+
+The download of the packages is performed directly from the
+upstream CVS repository. The script
+	prepare_ensembl_source_packages.sh
+guides through this process.

Modified: trunk/packages/ensembl/ensembl/57/debian/changelog
===================================================================
--- trunk/packages/ensembl/ensembl/57/debian/changelog	2010-08-31 21:20:22 UTC (rev 5206)
+++ trunk/packages/ensembl/ensembl/57/debian/changelog	2010-08-31 22:10:44 UTC (rev 5207)
@@ -1,4 +1,4 @@
-ensembl (57-2) UNRELEASED; urgency=low
+ensembl (57-2) experimental; urgency=low
 
   * Split packaging in many smaller packages (Closes: #589818)
 

Modified: trunk/packages/ensembl/ensembl/57/debian/copyright
===================================================================
--- trunk/packages/ensembl/ensembl/57/debian/copyright	2010-08-31 21:20:22 UTC (rev 5206)
+++ trunk/packages/ensembl/ensembl/57/debian/copyright	2010-08-31 22:10:44 UTC (rev 5207)
@@ -10,17 +10,90 @@
 
     ftp://ftp.ensembl.org/pub/release-57/mysql/ensembl_web_user_db/ensembl_web_user_db.sql.gz
 
-Upstream Author(s):
 
+Files: ensembl-compara/modules/Algorithm/Diff.pm
+       ensembl-external/family/modules/Algorithm/Diff.p
+Upstream Authors:
+	Anton Enright <enright at ebi.ac.uk>
+	Ned Konz <perl at bike-nomad.com>
+	Mark-Jason Dominus <mjd-perl-diff at plover.com>
+	Mario I. Wolczko <mario at wolczko.com>
+
+Files: ensembl/modules/Bio/EnsEMBL/Utils/Cache.pm
+Author: Joshua Chamas <chamas at alumni.stanford.org>
+Copyright: (c) 1999-2002 Joshua Chamas, Chamas Enterprises Inc.  
+	   Sponsored by development on NodeWorks http://www.nodeworks.com
+
+	All rights reserved. This program is free software; 
+	you can redistribute it and/or modify it under the same 
+	terms as Perl itself. 
+License:  Artistic or GPL-1+
+
+
+Files: modules/Bio/Das/*
+Author: Roger Pettett <rpettett at cpan.org> <rmp at sanger.ac.uk>
+Copyright: (C) 2007 GRL, by Roger Pettett
+License:  Artistic or GPL-1+
+
+Files: modules/CSS/Minifier.pm
+Author: Peter Michaux <petermichaux at gmail.com>
+Copyright: (C) 2007 by Peter Michaux
+License:  Artistic or GPL-1+
+
+Files: modules/JavaScript/Minifier.pm
+Authors: Peter Michaux <petermichaux at gmail.com>
+         Eric Herrera <herrera at 10east.com>
+Copyright: (C) 2007 by Peter Michaux
+License:  Artistic or GPL-1+
+
+Files: *
+
+Upstream Authors:
+
     Ewan Birney <birney at ebi.ac.uk>
-    and many others
+    and many others in the Ensembl Web Team.  Amongst them
 
+    Patrick Meidl <pm2 at sanger.ac.uk>, <meidl at ebi.ac.uk>
+    Jim Stalker <jws at sanger.ac.uk>
+    Javier Herrero <jherrero at ebi.ac.uk>
+    Kathryn Beal <kbeal at ebi.ac.uk>
+    Stephen Fitzgerald <stephenf at ebi.ac.uk>
+    Albert Vilella <avilella at ebi.ac.uk>
+    Abel Ureta-Vidal <abel at ebi.ac.uk>
+    Cara Woodwark <cara at ebi.ac.uk>
+    Heikki Levaslo <heikki at ebi.ac.uk>
+    Andy Jenkinson <aj at ebi.ac.uk>
+    Arek Kasprzyk <arek at ebi.ac.uk>
+    Jody Clements <jc3 at sanger.ac.uk>
+    Tony Cox <avc at sanger.ac.uk>
+    Pedro M. Gomez-Fabre <pedro.fabre-at-gen.gu.se>
+    Steve Searle <searle at sanger.ac.uk>
+    Stefab Graf <graef at ebi.ac.uk>
+    Nathan Johnson <njohnson at ebi.ac.uk>
+    Ian Sealy
+    Damian Keefe <dkeefe at ebi.ac.uk>
+    Gautier Koscielny (koscieln at ebi.ac.uk)
+    Daniel Rios <dani at ebi.ac.uk>
+    Steve Trevanion <st3 at sanger.ac.uk>
+    James Smith <js5 at sanger.ac.uk>
+    James Gilbert <jgrg at sanger.ac.uk>
+    Juguang Xiao <juguang at tll.org.sg> <juguang at fugu-sg.org>
+    Graham McVicker
+    Yuan Chen
+    Eugene Kulesha <ek3 at sanger.ac.uk>
+    Chris Mungall <cjm at fruitfly.org>
+    Anne Parker
+    Damian Smedley
+    Gudmundur Thorisson
+    
+
+
 Copyright:
 
     Copyright © 1999-2009 The European Bioinformatics Institute and
-    Genome Research Limited, and others. All rights reserved.
+    Genome Research Limited, and others  <helpdesk at ensembl.org>
 
-License:
+License: Ensembl License
 
     Redistribution and use in source and binary forms, with or without
     modification, are permitted provided that the following conditions
@@ -56,6 +129,24 @@
     OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
 
 
+License: Artistic
+ This program is free software; you can redistribute it and/or modify
+ it under the terms of the Artistic License, which comes with Perl.
+ .
+ On Debian GNU/Linux systems, the complete text of the Artistic License
+ can be found in `/usr/share/common-licenses/Artistic'.
+
+License: GPL-1+
+ This program is free software; you can redistribute it and/or modify
+ it under the terms of the GNU General Public License as published by
+ the Free Software Foundation; either version 1, or (at your option)
+ any later version.
+ .
+ On Debian GNU/Linux systems, the complete text of version 1 of the
+ General Public License can be found in `/usr/share/common-licenses/GPL-1'.
+
+
+
 The Debian packaging is:
 
     Copyright (C) 2010 Richard Holland <holland at eaglegenomics.com>

Copied: trunk/packages/ensembl/ensembl/57/debian/ensembl-doc.doc-base.EX (from rev 5205, trunk/packages/ensembl/ensembl/57/debian/ensembl.doc-base.EX)
===================================================================
--- trunk/packages/ensembl/ensembl/57/debian/ensembl-doc.doc-base.EX	                        (rev 0)
+++ trunk/packages/ensembl/ensembl/57/debian/ensembl-doc.doc-base.EX	2010-08-31 22:10:44 UTC (rev 5207)
@@ -0,0 +1,20 @@
+Document: ensembl
+Title: Debian ensembl Manual
+Author: <insert document author here>
+Abstract: This manual describes what ensembl is
+ and how it can be used to
+ manage online manuals on Debian systems.
+Section: unknown
+
+Format: debiandoc-sgml
+Files: /usr/share/doc/ensembl/ensembl.sgml.gz
+
+Format: postscript
+Files: /usr/share/doc/ensembl/ensembl.ps.gz
+
+Format: text
+Files: /usr/share/doc/ensembl/ensembl.text.gz
+
+Format: HTML
+Index: /usr/share/doc/ensembl/html/index.html
+Files: /usr/share/doc/ensembl/html/*.html

Deleted: trunk/packages/ensembl/ensembl/57/debian/ensembl.doc-base.EX
===================================================================
--- trunk/packages/ensembl/ensembl/57/debian/ensembl.doc-base.EX	2010-08-31 21:20:22 UTC (rev 5206)
+++ trunk/packages/ensembl/ensembl/57/debian/ensembl.doc-base.EX	2010-08-31 22:10:44 UTC (rev 5207)
@@ -1,20 +0,0 @@
-Document: ensembl
-Title: Debian ensembl Manual
-Author: <insert document author here>
-Abstract: This manual describes what ensembl is
- and how it can be used to
- manage online manuals on Debian systems.
-Section: unknown
-
-Format: debiandoc-sgml
-Files: /usr/share/doc/ensembl/ensembl.sgml.gz
-
-Format: postscript
-Files: /usr/share/doc/ensembl/ensembl.ps.gz
-
-Format: text
-Files: /usr/share/doc/ensembl/ensembl.text.gz
-
-Format: HTML
-Index: /usr/share/doc/ensembl/html/index.html
-Files: /usr/share/doc/ensembl/html/*.html


