[med-svn] r4598 - trunk/packages/R/r-cran-rocr/trunk/debian

Charles Plessy plessy at alioth.debian.org
Thu Feb 4 12:24:25 UTC 2010 

Author: plessy
Date: 2010-02-04 12:24:22 +0000 (Thu, 04 Feb 2010)
New Revision: 4598

Added:
   trunk/packages/R/r-cran-rocr/trunk/debian/README.Debian
Modified:
   trunk/packages/R/r-cran-rocr/trunk/debian/changelog
   trunk/packages/R/r-cran-rocr/trunk/debian/control
   trunk/packages/R/r-cran-rocr/trunk/debian/copyright
   trunk/packages/R/r-cran-rocr/trunk/debian/rules
   trunk/packages/R/r-cran-rocr/trunk/debian/upstream-metadata.yaml
Log:
New upstream release, plus packaging improvements.


Added: trunk/packages/R/r-cran-rocr/trunk/debian/README.Debian
===================================================================
--- trunk/packages/R/r-cran-rocr/trunk/debian/README.Debian	                        (rev 0)
+++ trunk/packages/R/r-cran-rocr/trunk/debian/README.Debian	2010-02-04 12:24:22 UTC (rev 4598)
@@ -0,0 +1,7 @@
+Notes on how this package is tested.
+────────────────────────────────────
+
+After building on the maintainer's computer, this package was locally installed
+and the library loaded into R in order to confirm its integrity.
+
+ -- Charles Plessy <plessy at debian.org>  Wed, 03 Feb 2010 14:28:04 +0900

Modified: trunk/packages/R/r-cran-rocr/trunk/debian/changelog
===================================================================
--- trunk/packages/R/r-cran-rocr/trunk/debian/changelog	2010-02-03 11:31:32 UTC (rev 4597)
+++ trunk/packages/R/r-cran-rocr/trunk/debian/changelog	2010-02-04 12:24:22 UTC (rev 4598)
@@ -1,3 +1,14 @@
+r-cran-rocr (1.0-4-1) unstable; urgency=low
+
+  * New upstream release.
+  * Incremented Standards-Version (debian/control) to reflect compliance
+    with Policy 3.8.4.
+  * Require a number equal or superior than the R version the package was built
+    with, using a R:Depends substvar (debian/control, debian/rules).
+  * Added notes to explain how this package is tested (debian/README.Debian).
+
+ -- Charles Plessy <plessy at debian.org>  Wed, 03 Feb 2010 12:59:59 +0900
+
 r-cran-rocr (1.0-3-3) unstable; urgency=low
 
   * New upstream version.
@@ -16,7 +27,7 @@
   * Switched to Debhelper 7 (debian/control, debian/compat).
   * Removed ${shlibs:Depends} and added ${misc:Depends} (debian/compat).
   * Added VCS archive metadata (debian/control).
-  * Documented various upstream informations in debian/upstream-metadata.yaml
+  * Documented various upstream information in debian/upstream-metadata.yaml
   * Added myself to the uploaders (debian/control).
 
  -- Charles Plessy <plessy at debian.org>  Sat, 24 Oct 2009 17:04:38 +0900
@@ -29,7 +40,7 @@
  
   * debian/control: Removed myself from uploaders as
      - Steffen never asked me whether I wanted to be included 
-     - Steffen never removed me despited repeated requests to do so
+     - Steffen never removed me despite repeated requests to do so
 
  -- Dirk Eddelbuettel <edd at debian.org>  Sat, 29 Nov 2008 13:13:47 -0600
 

Modified: trunk/packages/R/r-cran-rocr/trunk/debian/control
===================================================================
--- trunk/packages/R/r-cran-rocr/trunk/debian/control	2010-02-03 11:31:32 UTC (rev 4597)
+++ trunk/packages/R/r-cran-rocr/trunk/debian/control	2010-02-04 12:24:22 UTC (rev 4598)
@@ -4,14 +4,14 @@
 Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
 Uploaders: Steffen Moeller <moeller at debian.org>, Charles Plessy <plessy at debian.org>
 Build-Depends: debhelper (>= 7), cdbs, r-base-dev (>= 2.10.0), r-cran-gplots, r-cran-gtools, r-cran-gdata
-Standards-Version: 3.8.3
+Standards-Version: 3.8.4
 Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/R/r-cran-rocr/trunk/?rev=0&sc=0
 Vcs-Svn: svn://svn.debian.org/svn/debian-med/trunk/packages/R/r-cran-rocr/trunk/
 Homepage: http://rocr.bioinf.mpi-sb.mpg.de
 
 Package: r-cran-rocr
 Architecture: all
-Depends: ${misc:Depends}, r-base-core (>= 2.10.0), r-cran-gplots, r-cran-gtools, r-cran-gdata
+Depends: ${misc:Depends}, ${R:Depends}, r-cran-gplots, r-cran-gtools, r-cran-gdata
 Description: GNU R package to prepare and display ROC curves
  ROC graphs, sensitivity/specificity curves, lift charts,
  and precision/recall plots are popular examples of trade-off

Modified: trunk/packages/R/r-cran-rocr/trunk/debian/copyright
===================================================================
--- trunk/packages/R/r-cran-rocr/trunk/debian/copyright	2010-02-03 11:31:32 UTC (rev 4597)
+++ trunk/packages/R/r-cran-rocr/trunk/debian/copyright	2010-02-04 12:24:22 UTC (rev 4598)
@@ -1,6 +1,6 @@
 Name      :  ROCR
 Contact   :  Tobias Sing <tobias.sing at mpi-sb.mpg.de>
-Source    :  http://cran.r-project.org/src/contrib/ROCR_1.0-2.tar.gz
+Source    :  http://cran.r-project.org/src/contrib/ROCR_1.0-4.tar.gz
 
 
 Copyright :  © 2005-7 Tobias Sing, Oliver Sander, Niko Beerenwinkel and Thomas Lengauer.

Modified: trunk/packages/R/r-cran-rocr/trunk/debian/rules
===================================================================
--- trunk/packages/R/r-cran-rocr/trunk/debian/rules	2010-02-03 11:31:32 UTC (rev 4597)
+++ trunk/packages/R/r-cran-rocr/trunk/debian/rules	2010-02-04 12:24:22 UTC (rev 4598)
@@ -4,3 +4,7 @@
 # Copyright 2003-2006 by Dirk Eddelbuettel <edd at debian.org>
 
 include /usr/share/R/debian/r-cran.mk
+
+# Require a number equal or superior than the R version the package was built with.
+install/r-$(debRreposname)-$(cranName)::
+	echo "R:Depends=r-base-core (>= $(shell R --version | head -n1 | perl -ne 'print / +([0-9]\.[0-9]+\.[0-9])/'))" >> debian/r-$(debRreposname)-$(cranName).substvars

Modified: trunk/packages/R/r-cran-rocr/trunk/debian/upstream-metadata.yaml
===================================================================
--- trunk/packages/R/r-cran-rocr/trunk/debian/upstream-metadata.yaml	2010-02-03 11:31:32 UTC (rev 4597)
+++ trunk/packages/R/r-cran-rocr/trunk/debian/upstream-metadata.yaml	2010-02-04 12:24:22 UTC (rev 4598)
@@ -5,20 +5,18 @@
 Gallery: http://rocr.bioinf.mpi-sb.mpg.de/rocr_gallery.html
 Homepage: http://rocr.bioinf.mpi-sb.mpg.de
 Name: ROCR
-PubMed: 16096348
+PMID: 16096348
 Reference: |
- at article{TobiasSing10152005,
- author = {Sing, Tobias and Sander, Oliver and Beerenwinkel, Niko and Lengauer, Thomas},
- title = {{ROCR: visualizing classifier performance in R}},
- journal = {Bioinformatics},
- volume = {21},
- number = {20},
- pages = {3940-3941},
- doi = {10.1093/bioinformatics/bti623},
- year = {2005},
- URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/21/20/3940},
- eprint = {http://bioinformatics.oxfordjournals.org/cgi/reprint/21/20/3940.pdf}
- }
+ author: Sing, Tobias and Sander, Oliver and Beerenwinkel, Niko and Lengauer, Thomas
+ title: ROCR: visualizing classifier performance in R
+ journal: Bioinformatics
+ volume: 21
+ number: 20
+ pages: 3940-3941
+ year: 2005
+ URL: http://bioinformatics.oxfordjournals.org/cgi/content/abstract/21/20/3940
+ eprint: http://bioinformatics.oxfordjournals.org/cgi/reprint/21/20/3940.pdf
 Screenshot:
  - http://rocr.bioinf.mpi-sb.mpg.de/plot1.jpg
  - http://rocr.bioinf.mpi-sb.mpg.de/plot.jpg
+Watch: http://cran.r-project.org/src/contrib/ROCR_([-0-9\.]*)\.tar\.gz

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