[med-svn] r4489 - trunk/packages/probcons/trunk/debian

[Charles Plessy]

Author: plessy
Date: 2010-01-03 10:13:36 +0000 (Sun, 03 Jan 2010)
New Revision: 4489

Added:
   trunk/packages/probcons/trunk/debian/upstream-metadata.yaml
Modified:
   trunk/packages/probcons/trunk/debian/changelog
   trunk/packages/probcons/trunk/debian/control
Log:
Centralised informations in ?\226?\128?\152debian/upstream-metadata.yaml?\226?\128?\153.

Modified: trunk/packages/probcons/trunk/debian/changelog
===================================================================
--- trunk/packages/probcons/trunk/debian/changelog	2010-01-03 10:05:24 UTC (rev 4488)
+++ trunk/packages/probcons/trunk/debian/changelog	2010-01-03 10:13:36 UTC (rev 4489)
@@ -11,6 +11,10 @@
     - removed myself from Uploaders (will work from behind the scenes ;) )
     - updated debhelper dependency on >= 6 (also debian/compat)
 
+  [ Charles Plessy ]
+  * Documented informations in ‘debian/upstream-metadata.yaml’.
+  * Removed mention of the bibliographic reference in ‘debian/control’.
+
  -- David Paleino <d.paleino at gmail.com>  Wed, 11 Jun 2008 15:15:54 +0200
 
 probcons (1.12-4) unstable; urgency=low

Modified: trunk/packages/probcons/trunk/debian/control
===================================================================
--- trunk/packages/probcons/trunk/debian/control	2010-01-03 10:05:24 UTC (rev 4488)
+++ trunk/packages/probcons/trunk/debian/control	2010-01-03 10:13:36 UTC (rev 4489)
@@ -23,9 +23,7 @@
  produced by PROBCONS show statistically significant improvement over current
  programs, containing an average of 7% more correctly aligned columns than
  those of T-Coffee, 11% more correctly aligned columns than those of CLUSTAL W,
- and 14% more correctly aligned columns than those of DIALIGN. Probcons is
- published in  Do, C.B., Mahabhashyam, M.S.P., Brudno, M., and Batzoglou, S.
- 2005.  Genome Research 15: 330-340.
+ and 14% more correctly aligned columns than those of DIALIGN.
 
 Package: probcons-extra
 Architecture: any

Added: trunk/packages/probcons/trunk/debian/upstream-metadata.yaml
===================================================================
--- trunk/packages/probcons/trunk/debian/upstream-metadata.yaml	                        (rev 0)
+++ trunk/packages/probcons/trunk/debian/upstream-metadata.yaml	2010-01-03 10:13:36 UTC (rev 4489)
@@ -0,0 +1,16 @@
+Contact: Chuong Do <chuongdo at cs.stanford.edu>
+DOI: 10.1101/gr.2821705
+Homepage: http://probcons.stanford.edu/
+Name: ProbCons
+PMID: 15687296
+Reference:
+ author: Do, Chuong B. and Mahabhashyam, Mahathi S.P. and Brudno, Michael and Batzoglou, Serafim
+ title={ProbCons: Probabilistic consistency-based multiple sequence alignment
+ journal: Genome Research
+ volume: 15
+ number: 2
+ pages: 330-340
+ year: 2005
+ URL: http://genome.cshlp.org/content/15/2/330.abstract
+ eprint: http://genome.cshlp.org/content/15/2/330.full.pdf+html
+Watch: http://probcons.stanford.edu/download.html probcons_v(\d+)_(\d+)\.tar\.gz