[med-svn] r4508 - in trunk/packages: R/r-other-bio3d/trunk/debian bioperl/trunk/debian exonerate/trunk/debian hmmer/trunk/debian mummer/trunk/debian perlprimer/trunk/debian
Charles Plessy
plessy at alioth.debian.org
Sun Jan 3 15:18:35 UTC 2010
Author: plessy
Date: 2010-01-03 15:18:35 +0000 (Sun, 03 Jan 2010)
New Revision: 4508
Modified:
trunk/packages/R/r-other-bio3d/trunk/debian/upstream-metadata.yaml
trunk/packages/bioperl/trunk/debian/upstream-metadata.yaml
trunk/packages/exonerate/trunk/debian/upstream-metadata.yaml
trunk/packages/hmmer/trunk/debian/upstream-metadata.yaml
trunk/packages/mummer/trunk/debian/upstream-metadata.yaml
trunk/packages/perlprimer/trunk/debian/upstream-metadata.yaml
Log:
Syntax corrections.
Modified: trunk/packages/R/r-other-bio3d/trunk/debian/upstream-metadata.yaml
===================================================================
--- trunk/packages/R/r-other-bio3d/trunk/debian/upstream-metadata.yaml 2010-01-03 15:17:25 UTC (rev 4507)
+++ trunk/packages/R/r-other-bio3d/trunk/debian/upstream-metadata.yaml 2010-01-03 15:18:35 UTC (rev 4508)
@@ -3,18 +3,16 @@
Gallery: http://mccammon.ucsd.edu/~bgrant/bio3d/gallery/gallery.html
Homepage: http://mccammon.ucsd.edu/~bgrant/bio3d/
Name: Bio3D
-PubMed: 16940322
-Reference: |
- @article{BarryJ. Grant11012006,
- author = {Grant, Barry J. and Rodrigues, Ana P. C. and ElSawy, Karim M. and McCammon, J. Andrew and Caves, Leo S. D.},
- title = {{Bio3d: an R package for the comparative analysis of protein structures}},
- journal = {Bioinformatics},
- volume = {22},
- number = {21},
- pages = {2695-2696},
- doi = {10.1093/bioinformatics/btl461},
- year = {2006},
- URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/22/21/2695},
- eprint = {http://bioinformatics.oxfordjournals.org/cgi/reprint/22/21/2695.pdf}
- }
+PMID: 16940322
+Reference:
+ author: Grant, Barry J. and Rodrigues, Ana P. C. and ElSawy, Karim M. and McCammon, J. Andrew and Caves, Leo S. D.
+ title: {Bio3d: an R package for the comparative analysis of protein structures}
+ journal: Bioinformatics
+ volume: 22
+ number: 21
+ pages: 2695-2696
+ doi: 10.1093/bioinformatics/btl461
+ year: 2006
+ URL: http://bioinformatics.oxfordjournals.org/cgi/content/abstract/22/21/2695
+ eprint: http://bioinformatics.oxfordjournals.org/cgi/reprint/22/21/2695.pdf
Wiki: http://bio3d.pbworks.com/
Modified: trunk/packages/bioperl/trunk/debian/upstream-metadata.yaml
===================================================================
--- trunk/packages/bioperl/trunk/debian/upstream-metadata.yaml 2010-01-03 15:17:25 UTC (rev 4507)
+++ trunk/packages/bioperl/trunk/debian/upstream-metadata.yaml 2010-01-03 15:18:35 UTC (rev 4508)
@@ -1,21 +1,18 @@
Bugtracker: http://bugzilla.open-bio.org/
DOI: 10.1101/gr.361602
Homepage: http://www.bioperl.org/
-PubMed: 12368254
-Reference: |
- @article{bioperl:2002,
- author={J.E. Stajich and D. Block and K. Boulez and S.E. Brenner
+PMID: 12368254
+Reference:
+ author: >
+ J.E. Stajich and D. Block and K. Boulez and S.E. Brenner
and S.A. Chervitz and C. Dagdigian and G. Fuellen and J.G. Gilbert
and I. Korf and H. Lapp and H. Lehvaslaiho and C. Matsalla and
C.J. Mungall and B.I. Osborne and M.R. Pocock and P. Schattner and
- M. Senger and L.D. Stein and E. Stupka and M.D. Wilkinson and E. Birney},
- title="The Bioperl toolkit: Perl modules for the life sciences.",
- journal="Genome Res.",
- year=2002,
- volume=12,
- number=10,
- pages="1611-1618",
- doi={10.1101/gr.361602},
- pmid="12368254"
- }
+ M. Senger and L.D. Stein and E. Stupka and M.D. Wilkinson and E. Birney
+ title: The Bioperl toolkit: Perl modules for the life sciences.
+ journal Genome Res.
+ year: 2002
+ volume: 12
+ number: 10
+ pages: 1611-1618
Repository: svn://code.open-bio.org/bioperl/bioperl-live/
Modified: trunk/packages/exonerate/trunk/debian/upstream-metadata.yaml
===================================================================
--- trunk/packages/exonerate/trunk/debian/upstream-metadata.yaml 2010-01-03 15:17:25 UTC (rev 4507)
+++ trunk/packages/exonerate/trunk/debian/upstream-metadata.yaml 2010-01-03 15:18:35 UTC (rev 4508)
@@ -11,6 +11,6 @@
Year: 2005
Number: 1
Pages: 31
- URL http://www.biomedcentral.com/1471-2105/6/31
+ URL: http://www.biomedcentral.com/1471-2105/6/31
ISSN: 1471-2105
Watch: http://www.ebi.ac.uk/~guy/exonerate/exonerate-([0-9.]*)\.tar\.gz
Modified: trunk/packages/hmmer/trunk/debian/upstream-metadata.yaml
===================================================================
--- trunk/packages/hmmer/trunk/debian/upstream-metadata.yaml 2010-01-03 15:17:25 UTC (rev 4507)
+++ trunk/packages/hmmer/trunk/debian/upstream-metadata.yaml 2010-01-03 15:18:35 UTC (rev 4508)
@@ -1,5 +1,5 @@
Contact: http://selab.janelia.org/people/eddys/contact.html
-DOI = 10.1093/bioinformatics/14.9.755
+DOI: 10.1093/bioinformatics/14.9.755
Name: HMMER
Homepage: http://hmmer.janelia.org
PMID: 9918945
Modified: trunk/packages/mummer/trunk/debian/upstream-metadata.yaml
===================================================================
--- trunk/packages/mummer/trunk/debian/upstream-metadata.yaml 2010-01-03 15:17:25 UTC (rev 4507)
+++ trunk/packages/mummer/trunk/debian/upstream-metadata.yaml 2010-01-03 15:18:35 UTC (rev 4508)
@@ -11,6 +11,6 @@
Number: 2
Pages: R12
URL: http://genomebiology.com/2004/5/2/R12
- ISSN = 1465-6906
+ ISSN: 1465-6906
Repository: http://mummer.cvs.sourceforge.net/mummer/
Screenshots: http://sourceforge.net/project/screenshots.php?group_id=133157
Modified: trunk/packages/perlprimer/trunk/debian/upstream-metadata.yaml
===================================================================
--- trunk/packages/perlprimer/trunk/debian/upstream-metadata.yaml 2010-01-03 15:17:25 UTC (rev 4507)
+++ trunk/packages/perlprimer/trunk/debian/upstream-metadata.yaml 2010-01-03 15:18:35 UTC (rev 4508)
@@ -1,7 +1,7 @@
Contact: http://perlprimer.sourceforge.net/contact.html
DOI: 10.1093/bioinformatics/bth254
Homepage: http://perlprimer.sourceforge.net
-PubMed: 15073005
+PMId: 15073005
Reference: |
@article{OwenJ. Marshall10122004,
author = {Marshall, Owen J.},
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