[med-svn] r4520 - trunk/packages/seaview/trunk/debian
Charles Plessy
plessy at alioth.debian.org
Wed Jan 6 13:16:23 UTC 2010
Author: plessy
Date: 2010-01-06 13:16:22 +0000 (Wed, 06 Jan 2010)
New Revision: 4520
Modified:
trunk/packages/seaview/trunk/debian/changelog
trunk/packages/seaview/trunk/debian/copyright
trunk/packages/seaview/trunk/debian/references
trunk/packages/seaview/trunk/debian/upstream-metadata.yaml
Log:
New upstream release fixing a couple of bugs and having a new bibliographic reference.
Modified: trunk/packages/seaview/trunk/debian/changelog
===================================================================
--- trunk/packages/seaview/trunk/debian/changelog 2010-01-06 03:37:36 UTC (rev 4519)
+++ trunk/packages/seaview/trunk/debian/changelog 2010-01-06 13:16:22 UTC (rev 4520)
@@ -1,16 +1,20 @@
-seaview (1:4.2-2) UNRELEASED; urgency=low
+seaview (1:4.2.1-1) unstable; urgency=low
+ [ Charles Plessy ]
+ * New upstream release that can be compiled with GCC 4.4.2
+ Closes: #560438, Thanks to Luk Claes for the help.
+ * Updated bibliographic reference and Debian copyright file.
+
[ Andreas Tille ]
- * debian/control:
- - s/Debian-Med/Debian Med/
+ * s/Debian-Med/Debian Med/ in debian/control.
- -- Charles Plessy <plessy at debian.org> Sun, 18 Oct 2009 22:44:03 +0900
+ -- Charles Plessy <plessy at debian.org> Wed, 06 Jan 2010 21:59:51 +0900
seaview (1:4.2-1) unstable; urgency=low
* New upstream release.
* debian/control:
- - Build depend on unversionned libjpeg-dev package.
+ - Build depend on unversionned libjpeg-dev package.
- Added XS-Autobuild: yes to benefit from the non-free autobuilders.
- checked package conformance with Policy 3.8.3 (no changes needed).
* Documented zlib.conf in debian/copyright.
Modified: trunk/packages/seaview/trunk/debian/copyright
===================================================================
--- trunk/packages/seaview/trunk/debian/copyright 2010-01-06 03:37:36 UTC (rev 4519)
+++ trunk/packages/seaview/trunk/debian/copyright 2010-01-06 13:16:22 UTC (rev 4520)
@@ -2,7 +2,7 @@
Name : SeaView
Contact : Manolo Gouy <mgouy at biomserv.univ-lyon1.fr>
-Source : ftp://pbil.univ-lyon1.fr/pub/mol_phylogeny/seaview/archive/seaview_4.2.tar.gz
+Source : ftp://pbil.univ-lyon1.fr/pub/mol_phylogeny/seaview/archive/seaview_4.2.1.tar.gz
Disclamer : This package is not part of the Debian operating system.
The seaview source and binary Debian packages are part of the “non-free” area
@@ -13,7 +13,7 @@
mailing lists). The licences of SeaView do not forbid Debian from using
autobuilders to create binary packages.
-Copyright: 1996-2009 Manolo Gouy <mgouy at biomserv.univ-lyon1.fr>
+Copyright: 1996-2010 Manolo Gouy <mgouy at biomserv.univ-lyon1.fr>
License: GPL-3+ with PHYLIP exemption.
This program, except where indicated, is free software; you can redistribute it and/or
@@ -146,6 +146,6 @@
© 2003 Brian R Furry <bfurry at nac.net>
© 2005 Steve Langasek <vorlon at debian.org>
© 2007 Nelson A. de Oliveira <naoliv at debian.org>
- © 2006-2009 Charles Plessy <charles-debian-nospam at plessy.org>
+ © 2006–2010 Charles Plessy <plessy at debian.org>
License: unknown
Please treat the contributions of Charles Plessy as if they were in the public domain.
Modified: trunk/packages/seaview/trunk/debian/references
===================================================================
--- trunk/packages/seaview/trunk/debian/references 2010-01-06 03:37:36 UTC (rev 4519)
+++ trunk/packages/seaview/trunk/debian/references 2010-01-06 13:16:22 UTC (rev 4520)
@@ -1,3 +1,16 @@
+ at article{ManoloGouy10232009,
+author = {Gouy, Manolo and Guindon, Stephane and Gascuel, Olivier},
+title = {{SeaView version 4 : a multiplatform graphical user interface for sequence alignment and phylogenetic tree building}},
+journal = {Mol Biol Evol},
+volume = {},
+number = {},
+pages = {msp259},
+doi = {10.1093/molbev/msp259},
+year = {2009},
+URL = {http://mbe.oxfordjournals.org/cgi/content/abstract/msp259v1},
+eprint = {http://mbe.oxfordjournals.org/cgi/reprint/msp259v1.pdf}
+}
+
@article{N.Galtier12011996,
author = {Galtier, N. and Gouy, M. and Gautier, C.},
title = {{SEAVIEW and PHYLO_WIN: two graphic tools for sequence alignment and molecular phylogeny}},
@@ -10,4 +23,3 @@
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/12/6/543},
eprint = {http://bioinformatics.oxfordjournals.org/cgi/reprint/12/6/543.pdf}
}
-
Modified: trunk/packages/seaview/trunk/debian/upstream-metadata.yaml
===================================================================
--- trunk/packages/seaview/trunk/debian/upstream-metadata.yaml 2010-01-06 03:37:36 UTC (rev 4519)
+++ trunk/packages/seaview/trunk/debian/upstream-metadata.yaml 2010-01-06 13:16:22 UTC (rev 4520)
@@ -1,20 +1,20 @@
Contact: Manolo Gouy <mgouy at biomserv.univ-lyon1.fr>
Documentation: http://pbil.univ-lyon1.fr/software/seaview_data/seaview
-DOI: 10.1093/bioinformatics/12.6.543
+DOI: 10.1093/molbev/msp259
Downloads: ftp://pbil.univ-lyon1.fr/pub/mol_phylogeny/seaview/archive/
Homepage: http://pbil.univ-lyon1.fr/software/seaview
-PMID: 9021275
+PMID: 19854763
Reference:
- author: Galtier, N. and Gouy, M. and Gautier, C.
- title: SEAVIEW and PHYLO_WIN: two graphic tools for sequence alignment and molecular phylogeny
- journal: Comput. Appl. Biosci.
- volume: 12
- number: 6
- pages: 543-548
+ author: Gouy, Manolo and Guindon, Stephane and Gascuel, Olivier
+ title: SeaView version 4 : a multiplatform graphical user interface for sequence alignment and phylogenetic tree building
+ journal: Mol Biol Evol
+ volume: Advanced Online Publication
+ number:
+ pages: msp259
doi: 10.1093/bioinformatics/12.6.543
- year: 1996
- URL: http://bioinformatics.oxfordjournals.org/cgi/content/abstract/12/6/543
- eprint: http://bioinformatics.oxfordjournals.org/cgi/reprint/12/6/543.pdf
+ year: 2009
+ URL: http://mbe.oxfordjournals.org/cgi/content/abstract/msp259v1
+ eprint: http://mbe.oxfordjournals.org/cgi/reprint/msp259v1.pdf
Screenshots:
- http://pbil.univ-lyon1.fr/binaries/seaview4.png
- http://pbil.univ-lyon1.fr/binaries/seaview-tree.png
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