[med-svn] r4529 - trunk/packages/gbrowse/trunk/debian

[Charles Plessy]

Author: plessy
Date: 2010-01-08 05:19:03 +0000 (Fri, 08 Jan 2010)
New Revision: 4529

Added:
   trunk/packages/gbrowse/trunk/debian/README.source
Modified:
   trunk/packages/gbrowse/trunk/debian/changelog
   trunk/packages/gbrowse/trunk/debian/control
   trunk/packages/gbrowse/trunk/debian/rules
Log:
Updated to Gbrowse 1.70, and added debian/README.source.


Added: trunk/packages/gbrowse/trunk/debian/README.source
===================================================================
--- trunk/packages/gbrowse/trunk/debian/README.source	                        (rev 0)
+++ trunk/packages/gbrowse/trunk/debian/README.source	2010-01-08 05:19:03 UTC (rev 4529)
@@ -0,0 +1,9 @@
+gbrowse source package
+━━━━━━━━━━━━━━━━━━━━━━
+
+This package uses the ‘quilt’ program to patch the original upstream sources.
+This is documented in ‘/usr/share/doc/quilt/README.source’.
+
+This package is maintained by the Debian Med packaging team in a Subversion
+repository (see debian/control). All Debian Developers have commit rights on
+it.

Modified: trunk/packages/gbrowse/trunk/debian/changelog
===================================================================
--- trunk/packages/gbrowse/trunk/debian/changelog	2010-01-08 04:48:05 UTC (rev 4528)
+++ trunk/packages/gbrowse/trunk/debian/changelog	2010-01-08 05:19:03 UTC (rev 4529)
@@ -1,8 +1,5 @@
 gbrowse (1.70-1) UNRELEASED; urgency=low
 
-  TODO: It seems that this version of gbrowse prefers BioPerl 1.6, that is to
-  come soon.
-
   * Initial release (Closes: #429610)
 
  -- Charles Plessy <plessy at debian.org>  Tue, 26 Aug 2008 18:52:23 +0900

Modified: trunk/packages/gbrowse/trunk/debian/control
===================================================================
--- trunk/packages/gbrowse/trunk/debian/control	2010-01-08 04:48:05 UTC (rev 4528)
+++ trunk/packages/gbrowse/trunk/debian/control	2010-01-08 05:19:03 UTC (rev 4529)
@@ -4,16 +4,21 @@
 Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
 DM-Upload-Allowed: yes
 Uploaders: Charles Plessy <plessy at debian.org>
-Build-Depends: debhelper (>= 7), bioperl (> 1.5.2), quilt
+Build-Depends: debhelper (>= 7), quilt,
+  libio-string-perl, libbio-graphics-perl (>= 1.97), bioperl (>= 1.6),
+  libcgi-session-perl (>= 4.02), libgd-gd2-perl (>= 2.07),
+  libstatistics-descriptive-perl, libbio-db-das-chado-perl, perl
 Standards-Version: 3.7.3
 Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/gbrowse/trunk/?rev=0&sc=0
 Vcs-Svn: svn://svn.debian.org/svn/debian-med/trunk/packages/gbrowse/trunk/
-Homepage: http://www.gmod.org/wiki/index.php/GBrowse
+Homepage: http://gmod.org/wiki/GBrowse
 
 Package: gbrowse
-Architecture: all
-Depends: ${shlibs:Depends}, ${misc:Depends}, ${misc:Perl}
- libclass-base-perl, libio-string-perl, bioperl, libcgi-session-perl, libgd-gd2-noxpm-perl, libstatistics-descriptive-perl
+Architecture: any 
+Depends: ${perl:Depends}, ${shlibs:Depends}, ${misc:Depends},
+  libio-string-perl, libbio-graphics-perl (>= 1.97), bioperl (>= 1.6),
+  libcgi-session-perl (>= 4.02), libgd-gd2-perl (>= 2.07),
+  libstatistics-descriptive-perl
 # The above line comes from dh-make-perl
 Recommends: libdbd-mysql-perl, libdb4.4
 # Should probably also recomment mod-perl

Modified: trunk/packages/gbrowse/trunk/debian/rules
===================================================================
--- trunk/packages/gbrowse/trunk/debian/rules	2010-01-08 04:48:05 UTC (rev 4528)
+++ trunk/packages/gbrowse/trunk/debian/rules	2010-01-08 05:19:03 UTC (rev 4529)
@@ -61,10 +61,6 @@
 	[ ! -d $(TMP)/usr/share/perl5 ] || \
 		rmdir --ignore-fail-on-non-empty --parents --verbose \
 		$(TMP)/usr/share/perl5
-	# UGLY WORKAROUND TO A CONFLICT WITH BIOPERL 1.5.2
-	rm $(TMP)/usr/share/man/man3/Bio::Graphics::Glyph::ideogram.3pm
-	rm $(TMP)/usr/share/man/man3/Bio::Graphics::Glyph::heat_map.3pm
-	rm $(TMP)/usr/share/man/man3/Bio::Graphics::Glyph::heat_map_ideogram.3pm
 	touch $@
 
 # Build architecture-independent files here.