[med-svn] r5078 - in trunk/packages/R/r-other-valdar-bagphenotype/trunk/debian: . patches source
Steffen Möller
moeller at alioth.debian.org
Fri Jul 30 17:04:53 UTC 2010
Author: moeller
Date: 2010-07-30 17:04:51 +0000 (Fri, 30 Jul 2010)
New Revision: 5078
Added:
trunk/packages/R/r-other-valdar-bagphenotype/trunk/debian/changelog
trunk/packages/R/r-other-valdar-bagphenotype/trunk/debian/control
trunk/packages/R/r-other-valdar-bagphenotype/trunk/debian/copyright
trunk/packages/R/r-other-valdar-bagphenotype/trunk/debian/patches/
trunk/packages/R/r-other-valdar-bagphenotype/trunk/debian/patches/allowing_happy.hbrem.patch
trunk/packages/R/r-other-valdar-bagphenotype/trunk/debian/patches/no_text_in_between_sections.patch
trunk/packages/R/r-other-valdar-bagphenotype/trunk/debian/patches/rd_files_title_non_empty.patch
trunk/packages/R/r-other-valdar-bagphenotype/trunk/debian/patches/series
trunk/packages/R/r-other-valdar-bagphenotype/trunk/debian/rules
trunk/packages/R/r-other-valdar-bagphenotype/trunk/debian/source/
trunk/packages/R/r-other-valdar-bagphenotype/trunk/debian/source/format
trunk/packages/R/r-other-valdar-bagphenotype/trunk/debian/watch
Log:
Initial attempt to get the bagphenotype package Debianised.
The package is still a bit far from CRAN standards with
respect to its internal documentation, and thus it would
find its way possibly to experimental for the moment, but
not to unstable.
Added: trunk/packages/R/r-other-valdar-bagphenotype/trunk/debian/changelog
===================================================================
--- trunk/packages/R/r-other-valdar-bagphenotype/trunk/debian/changelog (rev 0)
+++ trunk/packages/R/r-other-valdar-bagphenotype/trunk/debian/changelog 2010-07-30 17:04:51 UTC (rev 5078)
@@ -0,0 +1,5 @@
+r-other-valdar-bagphenotype (0.22-1) unstable; urgency=low
+
+ * Initial release.
+
+ -- Steffen Moeller <moeller at debian.org> Fri, 30 Jul 2010 14:56:53 +0200
Added: trunk/packages/R/r-other-valdar-bagphenotype/trunk/debian/control
===================================================================
--- trunk/packages/R/r-other-valdar-bagphenotype/trunk/debian/control (rev 0)
+++ trunk/packages/R/r-other-valdar-bagphenotype/trunk/debian/control 2010-07-30 17:04:51 UTC (rev 5078)
@@ -0,0 +1,16 @@
+Source: r-other-valdar-bagphenotype
+Section: gnu-r
+Priority: optional
+Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+Uploaders: Steffen Moeller <moeller at debian.org>
+Build-Depends: debhelper (>= 5.0.0), cdbs, r-base-dev, r-cran-g.data (>= 2.0)
+Standards-Version: 3.9.1.0
+Homepage: http://www.unc.edu/~wvaldar/bagphenotype.html
+Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/R/r-other-valdar-bagphenotype/trunk/?rev=0&sc=0
+Vcs-Svn: svn://svn.debian.org/svn/debian-med/trunk/packages/R/r-other-valdar-bagphenotype/trunk/
+
+Package: r-other-valdar-bagphenotype.library
+Architecture: any
+Depends: ${shlibs:Depends}, r-base-core (>= 2.10.0), r-cran-g.data, happy (>= 2.3), r-cran-evd (>= 2.0), r-cran-mass
+Description: GNU R extension of the functionality of happy
+ mapping QTLs in populations descended from known founders
Added: trunk/packages/R/r-other-valdar-bagphenotype/trunk/debian/copyright
===================================================================
--- trunk/packages/R/r-other-valdar-bagphenotype/trunk/debian/copyright (rev 0)
+++ trunk/packages/R/r-other-valdar-bagphenotype/trunk/debian/copyright 2010-07-30 17:04:51 UTC (rev 5078)
@@ -0,0 +1,16 @@
+The R library combinat was written by William Valdar
+<william_valdar at med.unc.edu> and is also maintained by him.
+
+This package was created by Steffen Moeller <moeller at debian.org>.
+
+The sources were downloaded from http://www.unc.edu/~wvaldar/software/Rbagphenotype/distrib/ .
+
+The package was renamed from its upstream name 'bagphenotype.library' to
+'r-other-valdar-bagphenotype' in harmony with the R packaging policy to indicate
+that the package is external to the CRAN or BioC repositories.
+
+bagphenotype is copyright 1995-2008 of William Valdar, and released under the
+GNU General Public License (GPL) version 3 or later versions.
+
+On a Debian GNU/Linux system, the GPL license version 3 is included in the file
+/usr/share/common-licenses/GPL-3.
Added: trunk/packages/R/r-other-valdar-bagphenotype/trunk/debian/patches/allowing_happy.hbrem.patch
===================================================================
--- trunk/packages/R/r-other-valdar-bagphenotype/trunk/debian/patches/allowing_happy.hbrem.patch (rev 0)
+++ trunk/packages/R/r-other-valdar-bagphenotype/trunk/debian/patches/allowing_happy.hbrem.patch 2010-07-30 17:04:51 UTC (rev 5078)
@@ -0,0 +1,13 @@
+Index: bagphenotype.library/DESCRIPTION
+===================================================================
+--- bagphenotype.library.orig/DESCRIPTION 2010-07-30 16:51:10.443237791 +0200
++++ bagphenotype.library/DESCRIPTION 2010-07-30 17:22:40.100116936 +0200
+@@ -4,7 +4,7 @@
+ Version: 0.22
+ Date: 2010-03-02
+ Author: William Valdar
+-Depends: happy (>= 2.3), g.data (>= 2.0), evd (>= 2.0), MASS
++Depends: happy.hbrem, g.data (>= 2.0), evd (>= 2.0), MASS
+ Suggests: lme4 (>= 0.999375-28), Matrix (>= 0.999375)
+ Maintainer: <william_valdar at med.unc.edu>
+ Description: More about what it does (maybe more than one line)
Added: trunk/packages/R/r-other-valdar-bagphenotype/trunk/debian/patches/no_text_in_between_sections.patch
===================================================================
--- trunk/packages/R/r-other-valdar-bagphenotype/trunk/debian/patches/no_text_in_between_sections.patch (rev 0)
+++ trunk/packages/R/r-other-valdar-bagphenotype/trunk/debian/patches/no_text_in_between_sections.patch 2010-07-30 17:04:51 UTC (rev 5078)
@@ -0,0 +1,13 @@
+Index: bagphenotype.library/man/bagphenotype.library-package.Rd
+===================================================================
+--- bagphenotype.library.orig/man/bagphenotype.library-package.Rd 2010-07-30 19:01:01.553237677 +0200
++++ bagphenotype.library/man/bagphenotype.library-package.Rd 2010-07-30 19:01:09.173237741 +0200
+@@ -32,8 +32,6 @@
+ \references{
+ ~~ Literature or other references for background information ~~
+ }
+-~~ Optionally other standard keywords, one per line, from file KEYWORDS in ~~
+-~~ the R documentation directory ~~
+ \keyword{ package }
+ \seealso{
+ ~~ Optional links to other man pages, e.g. ~~
Added: trunk/packages/R/r-other-valdar-bagphenotype/trunk/debian/patches/rd_files_title_non_empty.patch
===================================================================
--- trunk/packages/R/r-other-valdar-bagphenotype/trunk/debian/patches/rd_files_title_non_empty.patch (rev 0)
+++ trunk/packages/R/r-other-valdar-bagphenotype/trunk/debian/patches/rd_files_title_non_empty.patch 2010-07-30 17:04:51 UTC (rev 5078)
@@ -0,0 +1,2353 @@
+Index: bagphenotype.library/man/DEFAULT.REDUCE.DMAT.CUTOFF.Rd
+===================================================================
+--- bagphenotype.library.orig/man/DEFAULT.REDUCE.DMAT.CUTOFF.Rd 2010-07-30 18:49:47.121989325 +0200
++++ bagphenotype.library/man/DEFAULT.REDUCE.DMAT.CUTOFF.Rd 2010-07-30 18:50:35.061989406 +0200
+@@ -3,7 +3,7 @@
+ \alias{DEFAULT.REDUCE.DMAT.CUTOFF}
+ \docType{data}
+ \title{
+-%% ~~ data name/kind ... ~~
++ ~~ data name/kind ... ~~
+ }
+ \description{
+ %% ~~ A concise (1-5 lines) description of the dataset. ~~
+Index: bagphenotype.library/man/ENV.Rd
+===================================================================
+--- bagphenotype.library.orig/man/ENV.Rd 2010-07-30 18:49:51.911989351 +0200
++++ bagphenotype.library/man/ENV.Rd 2010-07-30 18:50:35.061989406 +0200
+@@ -3,7 +3,7 @@
+ \alias{ENV}
+ %- Also NEED an '\alias' for EACH other topic documented here.
+ \title{
+-%% ~~function to do ... ~~
++ ~~function to do ... ~~
+ }
+ \description{
+ %% ~~ A concise (1-5 lines) description of what the function does. ~~
+Index: bagphenotype.library/man/SS.Rd
+===================================================================
+--- bagphenotype.library.orig/man/SS.Rd 2010-07-30 18:49:41.281990144 +0200
++++ bagphenotype.library/man/SS.Rd 2010-07-30 18:50:35.061989406 +0200
+@@ -3,7 +3,7 @@
+ \alias{SS}
+ %- Also NEED an '\alias' for EACH other topic documented here.
+ \title{
+-%% ~~function to do ... ~~
++ ~~function to do ... ~~
+ }
+ \description{
+ %% ~~ A concise (1-5 lines) description of what the function does. ~~
+Index: bagphenotype.library/man/SaveNullScan.Rd
+===================================================================
+--- bagphenotype.library.orig/man/SaveNullScan.Rd 2010-07-30 18:49:42.161989462 +0200
++++ bagphenotype.library/man/SaveNullScan.Rd 2010-07-30 18:50:35.061989406 +0200
+@@ -3,7 +3,7 @@
+ \alias{SaveNullScan}
+ %- Also NEED an '\alias' for EACH other topic documented here.
+ \title{
+-%% ~~function to do ... ~~
++ ~~function to do ... ~~
+ }
+ \description{
+ %% ~~ A concise (1-5 lines) description of what the function does. ~~
+Index: bagphenotype.library/man/SavePerm.Rd
+===================================================================
+--- bagphenotype.library.orig/man/SavePerm.Rd 2010-07-30 18:49:49.041989194 +0200
++++ bagphenotype.library/man/SavePerm.Rd 2010-07-30 18:50:35.061989406 +0200
+@@ -3,7 +3,7 @@
+ \alias{SavePerm}
+ %- Also NEED an '\alias' for EACH other topic documented here.
+ \title{
+-%% ~~function to do ... ~~
++ ~~function to do ... ~~
+ }
+ \description{
+ %% ~~ A concise (1-5 lines) description of what the function does. ~~
+Index: bagphenotype.library/man/SaveScan.Rd
+===================================================================
+--- bagphenotype.library.orig/man/SaveScan.Rd 2010-07-30 18:49:44.311989925 +0200
++++ bagphenotype.library/man/SaveScan.Rd 2010-07-30 18:50:35.061989406 +0200
+@@ -3,7 +3,7 @@
+ \alias{SaveScan}
+ %- Also NEED an '\alias' for EACH other topic documented here.
+ \title{
+-%% ~~function to do ... ~~
++ ~~function to do ... ~~
+ }
+ \description{
+ %% ~~ A concise (1-5 lines) description of what the function does. ~~
+Index: bagphenotype.library/man/apply.transform.Rd
+===================================================================
+--- bagphenotype.library.orig/man/apply.transform.Rd 2010-07-30 18:49:43.831989919 +0200
++++ bagphenotype.library/man/apply.transform.Rd 2010-07-30 18:50:35.061989406 +0200
+@@ -3,7 +3,7 @@
+ \alias{apply.transform}
+ %- Also NEED an '\alias' for EACH other topic documented here.
+ \title{
+-%% ~~function to do ... ~~
++ ~~function to do ... ~~
+ }
+ \description{
+ %% ~~ A concise (1-5 lines) description of what the function does. ~~
+Index: bagphenotype.library/man/assert.happy.Rd
+===================================================================
+--- bagphenotype.library.orig/man/assert.happy.Rd 2010-07-30 18:49:48.851988532 +0200
++++ bagphenotype.library/man/assert.happy.Rd 2010-07-30 18:50:35.061989406 +0200
+@@ -3,7 +3,7 @@
+ \alias{assert.happy}
+ %- Also NEED an '\alias' for EACH other topic documented here.
+ \title{
+-%% ~~function to do ... ~~
++ ~~function to do ... ~~
+ }
+ \description{
+ %% ~~ A concise (1-5 lines) description of what the function does. ~~
+Index: bagphenotype.library/man/bagphenotype.data.error.Rd
+===================================================================
+--- bagphenotype.library.orig/man/bagphenotype.data.error.Rd 2010-07-30 18:49:44.391989236 +0200
++++ bagphenotype.library/man/bagphenotype.data.error.Rd 2010-07-30 18:50:35.061989406 +0200
+@@ -3,7 +3,7 @@
+ \alias{bagphenotype.data.error}
+ %- Also NEED an '\alias' for EACH other topic documented here.
+ \title{
+-%% ~~function to do ... ~~
++ ~~function to do ... ~~
+ }
+ \description{
+ %% ~~ A concise (1-5 lines) description of what the function does. ~~
+Index: bagphenotype.library/man/bagphenotype.input.error.Rd
+===================================================================
+--- bagphenotype.library.orig/man/bagphenotype.input.error.Rd 2010-07-30 18:49:46.331989151 +0200
++++ bagphenotype.library/man/bagphenotype.input.error.Rd 2010-07-30 18:50:35.061989406 +0200
+@@ -3,7 +3,7 @@
+ \alias{bagphenotype.input.error}
+ %- Also NEED an '\alias' for EACH other topic documented here.
+ \title{
+-%% ~~function to do ... ~~
++ ~~function to do ... ~~
+ }
+ \description{
+ %% ~~ A concise (1-5 lines) description of what the function does. ~~
+Index: bagphenotype.library/man/bagphenotype.library-package.Rd
+===================================================================
+--- bagphenotype.library.orig/man/bagphenotype.library-package.Rd 2010-07-30 18:49:51.831989118 +0200
++++ bagphenotype.library/man/bagphenotype.library-package.Rd 2010-07-30 18:50:35.061989406 +0200
+@@ -32,8 +32,6 @@
+ \references{
+ ~~ Literature or other references for background information ~~
+ }
+-~~ Optionally other standard keywords, one per line, from file KEYWORDS in ~~
+-~~ the R documentation directory ~~
+ \keyword{ package }
+ \seealso{
+ ~~ Optional links to other man pages, e.g. ~~
+Index: bagphenotype.library/man/bootdump2scan.Rd
+===================================================================
+--- bagphenotype.library.orig/man/bootdump2scan.Rd 2010-07-30 18:49:45.991989599 +0200
++++ bagphenotype.library/man/bootdump2scan.Rd 2010-07-30 18:50:35.061989406 +0200
+@@ -3,7 +3,7 @@
+ \alias{bootdump2scan}
+ %- Also NEED an '\alias' for EACH other topic documented here.
+ \title{
+-%% ~~function to do ... ~~
++ ~~function to do ... ~~
+ }
+ \description{
+ %% ~~ A concise (1-5 lines) description of what the function does. ~~
+Index: bagphenotype.library/man/bootstrap.matrix.Rd
+===================================================================
+--- bagphenotype.library.orig/man/bootstrap.matrix.Rd 2010-07-30 18:49:50.171989239 +0200
++++ bagphenotype.library/man/bootstrap.matrix.Rd 2010-07-30 18:50:35.061989406 +0200
+@@ -3,7 +3,7 @@
+ \alias{bootstrap.matrix}
+ %- Also NEED an '\alias' for EACH other topic documented here.
+ \title{
+-%% ~~function to do ... ~~
++ ~~function to do ... ~~
+ }
+ \description{
+ %% ~~ A concise (1-5 lines) description of what the function does. ~~
+Index: bagphenotype.library/man/calc.rmip.Rd
+===================================================================
+--- bagphenotype.library.orig/man/calc.rmip.Rd 2010-07-30 18:49:42.781989618 +0200
++++ bagphenotype.library/man/calc.rmip.Rd 2010-07-30 18:50:35.061989406 +0200
+@@ -3,7 +3,7 @@
+ \alias{calc.rmip}
+ %- Also NEED an '\alias' for EACH other topic documented here.
+ \title{
+-%% ~~function to do ... ~~
++ ~~function to do ... ~~
+ }
+ \description{
+ %% ~~ A concise (1-5 lines) description of what the function does. ~~
+Index: bagphenotype.library/man/calc.rmip.pairwise.Rd
+===================================================================
+--- bagphenotype.library.orig/man/calc.rmip.pairwise.Rd 2010-07-30 18:49:51.151988710 +0200
++++ bagphenotype.library/man/calc.rmip.pairwise.Rd 2010-07-30 18:50:35.061989406 +0200
+@@ -3,7 +3,7 @@
+ \alias{calc.rmip.pairwise}
+ %- Also NEED an '\alias' for EACH other topic documented here.
+ \title{
+-%% ~~function to do ... ~~
++ ~~function to do ... ~~
+ }
+ \description{
+ %% ~~ A concise (1-5 lines) description of what the function does. ~~
+Index: bagphenotype.library/man/calc.rmip.windows.Rd
+===================================================================
+--- bagphenotype.library.orig/man/calc.rmip.windows.Rd 2010-07-30 18:49:50.091989911 +0200
++++ bagphenotype.library/man/calc.rmip.windows.Rd 2010-07-30 18:50:35.061989406 +0200
+@@ -3,7 +3,7 @@
+ \alias{calc.rmip.windows}
+ %- Also NEED an '\alias' for EACH other topic documented here.
+ \title{
+-%% ~~function to do ... ~~
++ ~~function to do ... ~~
+ }
+ \description{
+ %% ~~ A concise (1-5 lines) description of what the function does. ~~
+Index: bagphenotype.library/man/calc.rmip.windows.single.chr.Rd
+===================================================================
+--- bagphenotype.library.orig/man/calc.rmip.windows.single.chr.Rd 2010-07-30 18:49:40.081989649 +0200
++++ bagphenotype.library/man/calc.rmip.windows.single.chr.Rd 2010-07-30 18:50:35.061989406 +0200
+@@ -3,7 +3,7 @@
+ \alias{calc.rmip.windows.single.chr}
+ %- Also NEED an '\alias' for EACH other topic documented here.
+ \title{
+-%% ~~function to do ... ~~
++ ~~function to do ... ~~
+ }
+ \description{
+ %% ~~ A concise (1-5 lines) description of what the function does. ~~
+Index: bagphenotype.library/man/calc.subsample.logP.Rd
+===================================================================
+--- bagphenotype.library.orig/man/calc.subsample.logP.Rd 2010-07-30 18:49:40.881989377 +0200
++++ bagphenotype.library/man/calc.subsample.logP.Rd 2010-07-30 18:50:35.061989406 +0200
+@@ -3,7 +3,7 @@
+ \alias{calc.subsample.logP}
+ %- Also NEED an '\alias' for EACH other topic documented here.
+ \title{
+-%% ~~function to do ... ~~
++ ~~function to do ... ~~
+ }
+ \description{
+ %% ~~ A concise (1-5 lines) description of what the function does. ~~
+Index: bagphenotype.library/man/cmdline.flag.Rd
+===================================================================
+--- bagphenotype.library.orig/man/cmdline.flag.Rd 2010-07-30 18:49:49.881989070 +0200
++++ bagphenotype.library/man/cmdline.flag.Rd 2010-07-30 18:50:35.061989406 +0200
+@@ -3,7 +3,7 @@
+ \alias{cmdline.flag}
+ %- Also NEED an '\alias' for EACH other topic documented here.
+ \title{
+-%% ~~function to do ... ~~
++ ~~function to do ... ~~
+ }
+ \description{
+ %% ~~ A concise (1-5 lines) description of what the function does. ~~
+Index: bagphenotype.library/man/cmdline.has.option.Rd
+===================================================================
+--- bagphenotype.library.orig/man/cmdline.has.option.Rd 2010-07-30 18:49:40.491989110 +0200
++++ bagphenotype.library/man/cmdline.has.option.Rd 2010-07-30 18:50:35.061989406 +0200
+@@ -3,7 +3,7 @@
+ \alias{cmdline.has.option}
+ %- Also NEED an '\alias' for EACH other topic documented here.
+ \title{
+-%% ~~function to do ... ~~
++ ~~function to do ... ~~
+ }
+ \description{
+ %% ~~ A concise (1-5 lines) description of what the function does. ~~
+Index: bagphenotype.library/man/cmdline.integer.Rd
+===================================================================
+--- bagphenotype.library.orig/man/cmdline.integer.Rd 2010-07-30 18:49:48.781989426 +0200
++++ bagphenotype.library/man/cmdline.integer.Rd 2010-07-30 18:50:35.061989406 +0200
+@@ -3,7 +3,7 @@
+ \alias{cmdline.integer}
+ %- Also NEED an '\alias' for EACH other topic documented here.
+ \title{
+-%% ~~function to do ... ~~
++ ~~function to do ... ~~
+ }
+ \description{
+ %% ~~ A concise (1-5 lines) description of what the function does. ~~
+Index: bagphenotype.library/man/cmdline.logical.Rd
+===================================================================
+--- bagphenotype.library.orig/man/cmdline.logical.Rd 2010-07-30 18:49:47.371989391 +0200
++++ bagphenotype.library/man/cmdline.logical.Rd 2010-07-30 18:50:35.061989406 +0200
+@@ -3,7 +3,7 @@
+ \alias{cmdline.logical}
+ %- Also NEED an '\alias' for EACH other topic documented here.
+ \title{
+-%% ~~function to do ... ~~
++ ~~function to do ... ~~
+ }
+ \description{
+ %% ~~ A concise (1-5 lines) description of what the function does. ~~
+Index: bagphenotype.library/man/cmdline.numeric.Rd
+===================================================================
+--- bagphenotype.library.orig/man/cmdline.numeric.Rd 2010-07-30 18:49:45.411988966 +0200
++++ bagphenotype.library/man/cmdline.numeric.Rd 2010-07-30 18:50:35.061989406 +0200
+@@ -3,7 +3,7 @@
+ \alias{cmdline.numeric}
+ %- Also NEED an '\alias' for EACH other topic documented here.
+ \title{
+-%% ~~function to do ... ~~
++ ~~function to do ... ~~
+ }
+ \description{
+ %% ~~ A concise (1-5 lines) description of what the function does. ~~
+Index: bagphenotype.library/man/cmdline.option.Rd
+===================================================================
+--- bagphenotype.library.orig/man/cmdline.option.Rd 2010-07-30 18:49:41.511989898 +0200
++++ bagphenotype.library/man/cmdline.option.Rd 2010-07-30 18:50:35.061989406 +0200
+@@ -3,7 +3,7 @@
+ \alias{cmdline.option}
+ %- Also NEED an '\alias' for EACH other topic documented here.
+ \title{
+-%% ~~function to do ... ~~
++ ~~function to do ... ~~
+ }
+ \description{
+ %% ~~ A concise (1-5 lines) description of what the function does. ~~
+Index: bagphenotype.library/man/cmdline.strings.Rd
+===================================================================
+--- bagphenotype.library.orig/man/cmdline.strings.Rd 2010-07-30 18:49:50.471989606 +0200
++++ bagphenotype.library/man/cmdline.strings.Rd 2010-07-30 18:50:35.061989406 +0200
+@@ -3,7 +3,7 @@
+ \alias{cmdline.strings}
+ %- Also NEED an '\alias' for EACH other topic documented here.
+ \title{
+-%% ~~function to do ... ~~
++ ~~function to do ... ~~
+ }
+ \description{
+ %% ~~ A concise (1-5 lines) description of what the function does. ~~
+Index: bagphenotype.library/man/cols.as.Rd
+===================================================================
+--- bagphenotype.library.orig/man/cols.as.Rd 2010-07-30 18:49:50.241989764 +0200
++++ bagphenotype.library/man/cols.as.Rd 2010-07-30 18:50:35.061989406 +0200
+@@ -3,7 +3,7 @@
+ \alias{cols.as}
+ %- Also NEED an '\alias' for EACH other topic documented here.
+ \title{
+-%% ~~function to do ... ~~
++ ~~function to do ... ~~
+ }
+ \description{
+ %% ~~ A concise (1-5 lines) description of what the function does. ~~
+Index: bagphenotype.library/man/configfile.absorb.menu.line.Rd
+===================================================================
+--- bagphenotype.library.orig/man/configfile.absorb.menu.line.Rd 2010-07-30 18:49:49.831989838 +0200
++++ bagphenotype.library/man/configfile.absorb.menu.line.Rd 2010-07-30 18:50:35.061989406 +0200
+@@ -3,7 +3,7 @@
+ \alias{configfile.absorb.menu.line}
+ %- Also NEED an '\alias' for EACH other topic documented here.
+ \title{
+-%% ~~function to do ... ~~
++ ~~function to do ... ~~
+ }
+ \description{
+ %% ~~ A concise (1-5 lines) description of what the function does. ~~
+Index: bagphenotype.library/man/configfile.get.Rd
+===================================================================
+--- bagphenotype.library.orig/man/configfile.get.Rd 2010-07-30 18:49:43.731990137 +0200
++++ bagphenotype.library/man/configfile.get.Rd 2010-07-30 18:50:35.061989406 +0200
+@@ -3,7 +3,7 @@
+ \alias{configfile.get}
+ %- Also NEED an '\alias' for EACH other topic documented here.
+ \title{
+-%% ~~function to do ... ~~
++ ~~function to do ... ~~
+ }
+ \description{
+ %% ~~ A concise (1-5 lines) description of what the function does. ~~
+Index: bagphenotype.library/man/configfile.has.Rd
+===================================================================
+--- bagphenotype.library.orig/man/configfile.has.Rd 2010-07-30 18:49:50.391989729 +0200
++++ bagphenotype.library/man/configfile.has.Rd 2010-07-30 18:50:35.061989406 +0200
+@@ -3,7 +3,7 @@
+ \alias{configfile.has}
+ %- Also NEED an '\alias' for EACH other topic documented here.
+ \title{
+-%% ~~function to do ... ~~
++ ~~function to do ... ~~
+ }
+ \description{
+ %% ~~ A concise (1-5 lines) description of what the function does. ~~
+Index: bagphenotype.library/man/configfile.integer.Rd
+===================================================================
+--- bagphenotype.library.orig/man/configfile.integer.Rd 2010-07-30 18:49:46.181989650 +0200
++++ bagphenotype.library/man/configfile.integer.Rd 2010-07-30 18:50:35.061989406 +0200
+@@ -3,7 +3,7 @@
+ \alias{configfile.integer}
+ %- Also NEED an '\alias' for EACH other topic documented here.
+ \title{
+-%% ~~function to do ... ~~
++ ~~function to do ... ~~
+ }
+ \description{
+ %% ~~ A concise (1-5 lines) description of what the function does. ~~
+Index: bagphenotype.library/man/configfile.integers.Rd
+===================================================================
+--- bagphenotype.library.orig/man/configfile.integers.Rd 2010-07-30 18:49:49.341989792 +0200
++++ bagphenotype.library/man/configfile.integers.Rd 2010-07-30 18:50:35.061989406 +0200
+@@ -3,7 +3,7 @@
+ \alias{configfile.integers}
+ %- Also NEED an '\alias' for EACH other topic documented here.
+ \title{
+-%% ~~function to do ... ~~
++ ~~function to do ... ~~
+ }
+ \description{
+ %% ~~ A concise (1-5 lines) description of what the function does. ~~
+Index: bagphenotype.library/man/configfile.logical.Rd
+===================================================================
+--- bagphenotype.library.orig/man/configfile.logical.Rd 2010-07-30 18:49:46.041989791 +0200
++++ bagphenotype.library/man/configfile.logical.Rd 2010-07-30 18:50:35.061989406 +0200
+@@ -3,7 +3,7 @@
+ \alias{configfile.logical}
+ %- Also NEED an '\alias' for EACH other topic documented here.
+ \title{
+-%% ~~function to do ... ~~
++ ~~function to do ... ~~
+ }
+ \description{
+ %% ~~ A concise (1-5 lines) description of what the function does. ~~
+Index: bagphenotype.library/man/configfile.numeric.Rd
+===================================================================
+--- bagphenotype.library.orig/man/configfile.numeric.Rd 2010-07-30 18:49:42.401989593 +0200
++++ bagphenotype.library/man/configfile.numeric.Rd 2010-07-30 18:50:35.061989406 +0200
+@@ -3,7 +3,7 @@
+ \alias{configfile.numeric}
+ %- Also NEED an '\alias' for EACH other topic documented here.
+ \title{
+-%% ~~function to do ... ~~
++ ~~function to do ... ~~
+ }
+ \description{
+ %% ~~ A concise (1-5 lines) description of what the function does. ~~
+Index: bagphenotype.library/man/configfile.numerics.Rd
+===================================================================
+--- bagphenotype.library.orig/man/configfile.numerics.Rd 2010-07-30 18:49:43.271989698 +0200
++++ bagphenotype.library/man/configfile.numerics.Rd 2010-07-30 18:50:35.061989406 +0200
+@@ -3,7 +3,7 @@
+ \alias{configfile.numerics}
+ %- Also NEED an '\alias' for EACH other topic documented here.
+ \title{
+-%% ~~function to do ... ~~
++ ~~function to do ... ~~
+ }
+ \description{
+ %% ~~ A concise (1-5 lines) description of what the function does. ~~
+Index: bagphenotype.library/man/configfile.string.Rd
+===================================================================
+--- bagphenotype.library.orig/man/configfile.string.Rd 2010-07-30 18:49:44.231989620 +0200
++++ bagphenotype.library/man/configfile.string.Rd 2010-07-30 18:50:35.061989406 +0200
+@@ -3,7 +3,7 @@
+ \alias{configfile.string}
+ %- Also NEED an '\alias' for EACH other topic documented here.
+ \title{
+-%% ~~function to do ... ~~
++ ~~function to do ... ~~
+ }
+ \description{
+ %% ~~ A concise (1-5 lines) description of what the function does. ~~
+Index: bagphenotype.library/man/configfile.strings.Rd
+===================================================================
+--- bagphenotype.library.orig/man/configfile.strings.Rd 2010-07-30 18:49:44.161990017 +0200
++++ bagphenotype.library/man/configfile.strings.Rd 2010-07-30 18:50:35.061989406 +0200
+@@ -3,7 +3,7 @@
+ \alias{configfile.strings}
+ %- Also NEED an '\alias' for EACH other topic documented here.
+ \title{
+-%% ~~function to do ... ~~
++ ~~function to do ... ~~
+ }
+ \description{
+ %% ~~ A concise (1-5 lines) description of what the function does. ~~
+Index: bagphenotype.library/man/do.scan.Rd
+===================================================================
+--- bagphenotype.library.orig/man/do.scan.Rd 2010-07-30 18:49:45.921989882 +0200
++++ bagphenotype.library/man/do.scan.Rd 2010-07-30 18:50:35.061989406 +0200
+@@ -3,7 +3,7 @@
+ \alias{do.scan}
+ %- Also NEED an '\alias' for EACH other topic documented here.
+ \title{
+-%% ~~function to do ... ~~
++ ~~function to do ... ~~
+ }
+ \description{
+ %% ~~ A concise (1-5 lines) description of what the function does. ~~
+Index: bagphenotype.library/man/drop.formula.vars.Rd
+===================================================================
+--- bagphenotype.library.orig/man/drop.formula.vars.Rd 2010-07-30 18:49:52.441990462 +0200
++++ bagphenotype.library/man/drop.formula.vars.Rd 2010-07-30 18:50:35.061989406 +0200
+@@ -3,7 +3,7 @@
+ \alias{drop.formula.vars}
+ %- Also NEED an '\alias' for EACH other topic documented here.
+ \title{
+-%% ~~function to do ... ~~
++ ~~function to do ... ~~
+ }
+ \description{
+ %% ~~ A concise (1-5 lines) description of what the function does. ~~
+Index: bagphenotype.library/man/drop.unused.levels.Rd
+===================================================================
+--- bagphenotype.library.orig/man/drop.unused.levels.Rd 2010-07-30 18:49:48.111989653 +0200
++++ bagphenotype.library/man/drop.unused.levels.Rd 2010-07-30 18:50:35.061989406 +0200
+@@ -3,7 +3,7 @@
+ \alias{drop.unused.levels}
+ %- Also NEED an '\alias' for EACH other topic documented here.
+ \title{
+-%% ~~function to do ... ~~
++ ~~function to do ... ~~
+ }
+ \description{
+ %% ~~ A concise (1-5 lines) description of what the function does. ~~
+Index: bagphenotype.library/man/find.peaks.Rd
+===================================================================
+--- bagphenotype.library.orig/man/find.peaks.Rd 2010-07-30 18:49:49.421989387 +0200
++++ bagphenotype.library/man/find.peaks.Rd 2010-07-30 18:50:35.061989406 +0200
+@@ -3,7 +3,7 @@
+ \alias{find.peaks}
+ %- Also NEED an '\alias' for EACH other topic documented here.
+ \title{
+-%% ~~function to do ... ~~
++ ~~function to do ... ~~
+ }
+ \description{
+ %% ~~ A concise (1-5 lines) description of what the function does. ~~
+Index: bagphenotype.library/man/find.scan.peaks.Rd
+===================================================================
+--- bagphenotype.library.orig/man/find.scan.peaks.Rd 2010-07-30 18:49:51.221989874 +0200
++++ bagphenotype.library/man/find.scan.peaks.Rd 2010-07-30 18:50:35.061989406 +0200
+@@ -3,7 +3,7 @@
+ \alias{find.scan.peaks}
+ %- Also NEED an '\alias' for EACH other topic documented here.
+ \title{
+-%% ~~function to do ... ~~
++ ~~function to do ... ~~
+ }
+ \description{
+ %% ~~ A concise (1-5 lines) description of what the function does. ~~
+Index: bagphenotype.library/man/find.windowed.peaks.Rd
+===================================================================
+--- bagphenotype.library.orig/man/find.windowed.peaks.Rd 2010-07-30 18:49:47.681989639 +0200
++++ bagphenotype.library/man/find.windowed.peaks.Rd 2010-07-30 18:50:35.061989406 +0200
+@@ -3,7 +3,7 @@
+ \alias{find.windowed.peaks}
+ %- Also NEED an '\alias' for EACH other topic documented here.
+ \title{
+-%% ~~function to do ... ~~
++ ~~function to do ... ~~
+ }
+ \description{
+ %% ~~ A concise (1-5 lines) description of what the function does. ~~
+Index: bagphenotype.library/man/force.logical.Rd
+===================================================================
+--- bagphenotype.library.orig/man/force.logical.Rd 2010-07-30 18:49:52.051988424 +0200
++++ bagphenotype.library/man/force.logical.Rd 2010-07-30 18:50:35.061989406 +0200
+@@ -3,7 +3,7 @@
+ \alias{force.logical}
+ %- Also NEED an '\alias' for EACH other topic documented here.
+ \title{
+-%% ~~function to do ... ~~
++ ~~function to do ... ~~
+ }
+ \description{
+ %% ~~ A concise (1-5 lines) description of what the function does. ~~
+Index: bagphenotype.library/man/formula.as.string.Rd
+===================================================================
+--- bagphenotype.library.orig/man/formula.as.string.Rd 2010-07-30 18:49:46.881989299 +0200
++++ bagphenotype.library/man/formula.as.string.Rd 2010-07-30 18:50:35.061989406 +0200
+@@ -3,7 +3,7 @@
+ \alias{formula.as.string}
+ %- Also NEED an '\alias' for EACH other topic documented here.
+ \title{
+-%% ~~function to do ... ~~
++ ~~function to do ... ~~
+ }
+ \description{
+ %% ~~ A concise (1-5 lines) description of what the function does. ~~
+Index: bagphenotype.library/man/forward.selection.Rd
+===================================================================
+--- bagphenotype.library.orig/man/forward.selection.Rd 2010-07-30 18:49:51.661989389 +0200
++++ bagphenotype.library/man/forward.selection.Rd 2010-07-30 18:50:35.061989406 +0200
+@@ -3,7 +3,7 @@
+ \alias{forward.selection}
+ %- Also NEED an '\alias' for EACH other topic documented here.
+ \title{
+-%% ~~function to do ... ~~
++ ~~function to do ... ~~
+ }
+ \description{
+ %% ~~ A concise (1-5 lines) description of what the function does. ~~
+Index: bagphenotype.library/man/fprint.Rd
+===================================================================
+--- bagphenotype.library.orig/man/fprint.Rd 2010-07-30 18:49:47.991990056 +0200
++++ bagphenotype.library/man/fprint.Rd 2010-07-30 18:50:35.061989406 +0200
+@@ -3,7 +3,7 @@
+ \alias{fprint}
+ %- Also NEED an '\alias' for EACH other topic documented here.
+ \title{
+-%% ~~function to do ... ~~
++ ~~function to do ... ~~
+ }
+ \description{
+ %% ~~ A concise (1-5 lines) description of what the function does. ~~
+Index: bagphenotype.library/man/freeman.tukey.Rd
+===================================================================
+--- bagphenotype.library.orig/man/freeman.tukey.Rd 2010-07-30 18:49:42.091989443 +0200
++++ bagphenotype.library/man/freeman.tukey.Rd 2010-07-30 18:50:35.061989406 +0200
+@@ -3,7 +3,7 @@
+ \alias{freeman.tukey}
+ %- Also NEED an '\alias' for EACH other topic documented here.
+ \title{
+-%% ~~function to do ... ~~
++ ~~function to do ... ~~
+ }
+ \description{
+ %% ~~ A concise (1-5 lines) description of what the function does. ~~
+Index: bagphenotype.library/man/general.boot.scan.Rd
+===================================================================
+--- bagphenotype.library.orig/man/general.boot.scan.Rd 2010-07-30 18:49:46.261989666 +0200
++++ bagphenotype.library/man/general.boot.scan.Rd 2010-07-30 18:50:35.061989406 +0200
+@@ -3,7 +3,7 @@
+ \alias{general.boot.scan}
+ %- Also NEED an '\alias' for EACH other topic documented here.
+ \title{
+-%% ~~function to do ... ~~
++ ~~function to do ... ~~
+ }
+ \description{
+ %% ~~ A concise (1-5 lines) description of what the function does. ~~
+Index: bagphenotype.library/man/general.null.scan.Rd
+===================================================================
+--- bagphenotype.library.orig/man/general.null.scan.Rd 2010-07-30 18:49:41.891989906 +0200
++++ bagphenotype.library/man/general.null.scan.Rd 2010-07-30 18:50:35.061989406 +0200
+@@ -3,7 +3,7 @@
+ \alias{general.null.scan}
+ %- Also NEED an '\alias' for EACH other topic documented here.
+ \title{
+-%% ~~function to do ... ~~
++ ~~function to do ... ~~
+ }
+ \description{
+ %% ~~ A concise (1-5 lines) description of what the function does. ~~
+Index: bagphenotype.library/man/general.permute.scan.Rd
+===================================================================
+--- bagphenotype.library.orig/man/general.permute.scan.Rd 2010-07-30 18:49:51.591989264 +0200
++++ bagphenotype.library/man/general.permute.scan.Rd 2010-07-30 18:50:35.061989406 +0200
+@@ -3,7 +3,7 @@
+ \alias{general.permute.scan}
+ %- Also NEED an '\alias' for EACH other topic documented here.
+ \title{
+-%% ~~function to do ... ~~
++ ~~function to do ... ~~
+ }
+ \description{
+ %% ~~ A concise (1-5 lines) description of what the function does. ~~
+Index: bagphenotype.library/man/general.scan.Rd
+===================================================================
+--- bagphenotype.library.orig/man/general.scan.Rd 2010-07-30 18:49:47.041989403 +0200
++++ bagphenotype.library/man/general.scan.Rd 2010-07-30 18:50:35.061989406 +0200
+@@ -3,7 +3,7 @@
+ \alias{general.scan}
+ %- Also NEED an '\alias' for EACH other topic documented here.
+ \title{
+-%% ~~function to do ... ~~
++ ~~function to do ... ~~
+ }
+ \description{
+ %% ~~ A concise (1-5 lines) description of what the function does. ~~
+Index: bagphenotype.library/man/genotype.to.count.Rd
+===================================================================
+--- bagphenotype.library.orig/man/genotype.to.count.Rd 2010-07-30 18:49:48.971989487 +0200
++++ bagphenotype.library/man/genotype.to.count.Rd 2010-07-30 18:50:35.061989406 +0200
+@@ -3,7 +3,7 @@
+ \alias{genotype.to.count}
+ %- Also NEED an '\alias' for EACH other topic documented here.
+ \title{
+-%% ~~function to do ... ~~
++ ~~function to do ... ~~
+ }
+ \description{
+ %% ~~ A concise (1-5 lines) description of what the function does. ~~
+Index: bagphenotype.library/man/genotype.to.factor.Rd
+===================================================================
+--- bagphenotype.library.orig/man/genotype.to.factor.Rd 2010-07-30 18:49:51.981989891 +0200
++++ bagphenotype.library/man/genotype.to.factor.Rd 2010-07-30 18:50:35.061989406 +0200
+@@ -3,7 +3,7 @@
+ \alias{genotype.to.factor}
+ %- Also NEED an '\alias' for EACH other topic documented here.
+ \title{
+-%% ~~function to do ... ~~
++ ~~function to do ... ~~
+ }
+ \description{
+ %% ~~ A concise (1-5 lines) description of what the function does. ~~
+Index: bagphenotype.library/man/genotype.to.hier.Rd
+===================================================================
+--- bagphenotype.library.orig/man/genotype.to.hier.Rd 2010-07-30 18:49:50.941989773 +0200
++++ bagphenotype.library/man/genotype.to.hier.Rd 2010-07-30 18:50:35.061989406 +0200
+@@ -3,7 +3,7 @@
+ \alias{genotype.to.hier}
+ %- Also NEED an '\alias' for EACH other topic documented here.
+ \title{
+-%% ~~function to do ... ~~
++ ~~function to do ... ~~
+ }
+ \description{
+ %% ~~ A concise (1-5 lines) description of what the function does. ~~
+Index: bagphenotype.library/man/get.phenotype.data.Rd
+===================================================================
+--- bagphenotype.library.orig/man/get.phenotype.data.Rd 2010-07-30 18:49:48.191989463 +0200
++++ bagphenotype.library/man/get.phenotype.data.Rd 2010-07-30 18:50:35.061989406 +0200
+@@ -3,7 +3,7 @@
+ \alias{get.phenotype.data}
+ %- Also NEED an '\alias' for EACH other topic documented here.
+ \title{
+-%% ~~function to do ... ~~
++ ~~function to do ... ~~
+ }
+ \description{
+ %% ~~ A concise (1-5 lines) description of what the function does. ~~
+Index: bagphenotype.library/man/get.the.locus.Rd
+===================================================================
+--- bagphenotype.library.orig/man/get.the.locus.Rd 2010-07-30 18:49:43.991989945 +0200
++++ bagphenotype.library/man/get.the.locus.Rd 2010-07-30 18:50:35.061989406 +0200
+@@ -3,7 +3,7 @@
+ \alias{get.the.locus}
+ %- Also NEED an '\alias' for EACH other topic documented here.
+ \title{
+-%% ~~function to do ... ~~
++ ~~function to do ... ~~
+ }
+ \description{
+ %% ~~ A concise (1-5 lines) description of what the function does. ~~
+Index: bagphenotype.library/man/happy.check.bp.Rd
+===================================================================
+--- bagphenotype.library.orig/man/happy.check.bp.Rd 2010-07-30 18:49:45.121990081 +0200
++++ bagphenotype.library/man/happy.check.bp.Rd 2010-07-30 18:50:35.061989406 +0200
+@@ -3,7 +3,7 @@
+ \alias{happy.check.bp}
+ %- Also NEED an '\alias' for EACH other topic documented here.
+ \title{
+-%% ~~function to do ... ~~
++ ~~function to do ... ~~
+ }
+ \description{
+ %% ~~ A concise (1-5 lines) description of what the function does. ~~
+Index: bagphenotype.library/man/happy.expand.formula.Rd
+===================================================================
+--- bagphenotype.library.orig/man/happy.expand.formula.Rd 2010-07-30 18:49:50.631989735 +0200
++++ bagphenotype.library/man/happy.expand.formula.Rd 2010-07-30 18:50:35.061989406 +0200
+@@ -3,7 +3,7 @@
+ \alias{happy.expand.formula}
+ %- Also NEED an '\alias' for EACH other topic documented here.
+ \title{
+-%% ~~function to do ... ~~
++ ~~function to do ... ~~
+ }
+ \description{
+ %% ~~ A concise (1-5 lines) description of what the function does. ~~
+Index: bagphenotype.library/man/happy.get.allele.freq.Rd
+===================================================================
+--- bagphenotype.library.orig/man/happy.get.allele.freq.Rd 2010-07-30 18:49:49.661989462 +0200
++++ bagphenotype.library/man/happy.get.allele.freq.Rd 2010-07-30 18:50:35.061989406 +0200
+@@ -3,7 +3,7 @@
+ \alias{happy.get.allele.freq}
+ %- Also NEED an '\alias' for EACH other topic documented here.
+ \title{
+-%% ~~function to do ... ~~
++ ~~function to do ... ~~
+ }
+ \description{
+ %% ~~ A concise (1-5 lines) description of what the function does. ~~
+Index: bagphenotype.library/man/happy.get.bp.Rd
+===================================================================
+--- bagphenotype.library.orig/man/happy.get.bp.Rd 2010-07-30 18:49:40.421989498 +0200
++++ bagphenotype.library/man/happy.get.bp.Rd 2010-07-30 18:50:35.061989406 +0200
+@@ -3,7 +3,7 @@
+ \alias{happy.get.bp}
+ %- Also NEED an '\alias' for EACH other topic documented here.
+ \title{
+-%% ~~function to do ... ~~
++ ~~function to do ... ~~
+ }
+ \description{
+ %% ~~ A concise (1-5 lines) description of what the function does. ~~
+Index: bagphenotype.library/man/happy.get.chromosome.length.Rd
+===================================================================
+--- bagphenotype.library.orig/man/happy.get.chromosome.length.Rd 2010-07-30 18:49:43.901989516 +0200
++++ bagphenotype.library/man/happy.get.chromosome.length.Rd 2010-07-30 18:50:35.061989406 +0200
+@@ -3,7 +3,7 @@
+ \alias{happy.get.chromosome.length}
+ %- Also NEED an '\alias' for EACH other topic documented here.
+ \title{
+-%% ~~function to do ... ~~
++ ~~function to do ... ~~
+ }
+ \description{
+ %% ~~ A concise (1-5 lines) description of what the function does. ~~
+Index: bagphenotype.library/man/happy.get.design.Rd
+===================================================================
+--- bagphenotype.library.orig/man/happy.get.design.Rd 2010-07-30 18:49:46.811990252 +0200
++++ bagphenotype.library/man/happy.get.design.Rd 2010-07-30 18:50:35.061989406 +0200
+@@ -3,7 +3,7 @@
+ \alias{happy.get.design}
+ %- Also NEED an '\alias' for EACH other topic documented here.
+ \title{
+-%% ~~function to do ... ~~
++ ~~function to do ... ~~
+ }
+ \description{
+ %% ~~ A concise (1-5 lines) description of what the function does. ~~
+Index: bagphenotype.library/man/happy.get.first.marker.Rd
+===================================================================
+--- bagphenotype.library.orig/man/happy.get.first.marker.Rd 2010-07-30 18:49:40.721989887 +0200
++++ bagphenotype.library/man/happy.get.first.marker.Rd 2010-07-30 18:50:35.061989406 +0200
+@@ -3,7 +3,7 @@
+ \alias{happy.get.first.marker}
+ %- Also NEED an '\alias' for EACH other topic documented here.
+ \title{
+-%% ~~function to do ... ~~
++ ~~function to do ... ~~
+ }
+ \description{
+ %% ~~ A concise (1-5 lines) description of what the function does. ~~
+Index: bagphenotype.library/man/happy.get.genome.location.Rd
+===================================================================
+--- bagphenotype.library.orig/man/happy.get.genome.location.Rd 2010-07-30 18:49:42.471989752 +0200
++++ bagphenotype.library/man/happy.get.genome.location.Rd 2010-07-30 18:50:35.061989406 +0200
+@@ -3,7 +3,7 @@
+ \alias{happy.get.genome.location}
+ %- Also NEED an '\alias' for EACH other topic documented here.
+ \title{
+-%% ~~function to do ... ~~
++ ~~function to do ... ~~
+ }
+ \description{
+ %% ~~ A concise (1-5 lines) description of what the function does. ~~
+Index: bagphenotype.library/man/happy.get.genotype.Rd
+===================================================================
+--- bagphenotype.library.orig/man/happy.get.genotype.Rd 2010-07-30 18:49:48.471989317 +0200
++++ bagphenotype.library/man/happy.get.genotype.Rd 2010-07-30 18:50:35.061989406 +0200
+@@ -3,7 +3,7 @@
+ \alias{happy.get.genotype}
+ %- Also NEED an '\alias' for EACH other topic documented here.
+ \title{
+-%% ~~function to do ... ~~
++ ~~function to do ... ~~
+ }
+ \description{
+ %% ~~ A concise (1-5 lines) description of what the function does. ~~
+Index: bagphenotype.library/man/happy.get.interval.length.Rd
+===================================================================
+--- bagphenotype.library.orig/man/happy.get.interval.length.Rd 2010-07-30 18:49:40.801990082 +0200
++++ bagphenotype.library/man/happy.get.interval.length.Rd 2010-07-30 18:50:35.071989148 +0200
+@@ -3,7 +3,7 @@
+ \alias{happy.get.interval.length}
+ %- Also NEED an '\alias' for EACH other topic documented here.
+ \title{
+-%% ~~function to do ... ~~
++ ~~function to do ... ~~
+ }
+ \description{
+ %% ~~ A concise (1-5 lines) description of what the function does. ~~
+Index: bagphenotype.library/man/happy.get.interval.midpoint.Rd
+===================================================================
+--- bagphenotype.library.orig/man/happy.get.interval.midpoint.Rd 2010-07-30 18:49:43.211989498 +0200
++++ bagphenotype.library/man/happy.get.interval.midpoint.Rd 2010-07-30 18:50:35.071989148 +0200
+@@ -3,7 +3,7 @@
+ \alias{happy.get.interval.midpoint}
+ %- Also NEED an '\alias' for EACH other topic documented here.
+ \title{
+-%% ~~function to do ... ~~
++ ~~function to do ... ~~
+ }
+ \description{
+ %% ~~ A concise (1-5 lines) description of what the function does. ~~
+Index: bagphenotype.library/man/happy.get.interval.over.Rd
+===================================================================
+--- bagphenotype.library.orig/man/happy.get.interval.over.Rd 2010-07-30 18:49:40.641989175 +0200
++++ bagphenotype.library/man/happy.get.interval.over.Rd 2010-07-30 18:50:35.071989148 +0200
+@@ -3,7 +3,7 @@
+ \alias{happy.get.interval.over}
+ %- Also NEED an '\alias' for EACH other topic documented here.
+ \title{
+-%% ~~function to do ... ~~
++ ~~function to do ... ~~
+ }
+ \description{
+ %% ~~ A concise (1-5 lines) description of what the function does. ~~
+Index: bagphenotype.library/man/happy.get.interval.range.Rd
+===================================================================
+--- bagphenotype.library.orig/man/happy.get.interval.range.Rd 2010-07-30 18:49:43.581989187 +0200
++++ bagphenotype.library/man/happy.get.interval.range.Rd 2010-07-30 18:50:35.071989148 +0200
+@@ -3,7 +3,7 @@
+ \alias{happy.get.interval.range}
+ %- Also NEED an '\alias' for EACH other topic documented here.
+ \title{
+-%% ~~function to do ... ~~
++ ~~function to do ... ~~
+ }
+ \description{
+ %% ~~ A concise (1-5 lines) description of what the function does. ~~
+Index: bagphenotype.library/man/happy.get.intervals.Rd
+===================================================================
+--- bagphenotype.library.orig/man/happy.get.intervals.Rd 2010-07-30 18:49:49.581989646 +0200
++++ bagphenotype.library/man/happy.get.intervals.Rd 2010-07-30 18:50:35.071989148 +0200
+@@ -3,7 +3,7 @@
+ \alias{happy.get.intervals}
+ %- Also NEED an '\alias' for EACH other topic documented here.
+ \title{
+-%% ~~function to do ... ~~
++ ~~function to do ... ~~
+ }
+ \description{
+ %% ~~ A concise (1-5 lines) description of what the function does. ~~
+Index: bagphenotype.library/man/happy.get.intervals.in.range.Rd
+===================================================================
+--- bagphenotype.library.orig/man/happy.get.intervals.in.range.Rd 2010-07-30 18:49:41.201989652 +0200
++++ bagphenotype.library/man/happy.get.intervals.in.range.Rd 2010-07-30 18:50:35.071989148 +0200
+@@ -3,7 +3,7 @@
+ \alias{happy.get.intervals.in.range}
+ %- Also NEED an '\alias' for EACH other topic documented here.
+ \title{
+-%% ~~function to do ... ~~
++ ~~function to do ... ~~
+ }
+ \description{
+ %% ~~ A concise (1-5 lines) description of what the function does. ~~
+Index: bagphenotype.library/man/happy.get.last.marker.Rd
+===================================================================
+--- bagphenotype.library.orig/man/happy.get.last.marker.Rd 2010-07-30 18:49:51.511988785 +0200
++++ bagphenotype.library/man/happy.get.last.marker.Rd 2010-07-30 18:50:35.071989148 +0200
+@@ -3,7 +3,7 @@
+ \alias{happy.get.last.marker}
+ %- Also NEED an '\alias' for EACH other topic documented here.
+ \title{
+-%% ~~function to do ... ~~
++ ~~function to do ... ~~
+ }
+ \description{
+ %% ~~ A concise (1-5 lines) description of what the function does. ~~
+Index: bagphenotype.library/man/happy.get.location.Rd
+===================================================================
+--- bagphenotype.library.orig/man/happy.get.location.Rd 2010-07-30 18:49:47.881990083 +0200
++++ bagphenotype.library/man/happy.get.location.Rd 2010-07-30 18:50:35.071989148 +0200
+@@ -3,7 +3,7 @@
+ \alias{happy.get.location}
+ %- Also NEED an '\alias' for EACH other topic documented here.
+ \title{
+-%% ~~function to do ... ~~
++ ~~function to do ... ~~
+ }
+ \description{
+ %% ~~ A concise (1-5 lines) description of what the function does. ~~
+Index: bagphenotype.library/man/happy.get.locus.data.Rd
+===================================================================
+--- bagphenotype.library.orig/man/happy.get.locus.data.Rd 2010-07-30 18:49:45.001989465 +0200
++++ bagphenotype.library/man/happy.get.locus.data.Rd 2010-07-30 18:50:35.071989148 +0200
+@@ -3,7 +3,7 @@
+ \alias{happy.get.locus.data}
+ %- Also NEED an '\alias' for EACH other topic documented here.
+ \title{
+-%% ~~function to do ... ~~
++ ~~function to do ... ~~
+ }
+ \description{
+ %% ~~ A concise (1-5 lines) description of what the function does. ~~
+Index: bagphenotype.library/man/happy.get.markers.Rd
+===================================================================
+--- bagphenotype.library.orig/man/happy.get.markers.Rd 2010-07-30 18:49:43.141988713 +0200
++++ bagphenotype.library/man/happy.get.markers.Rd 2010-07-30 18:50:35.071989148 +0200
+@@ -3,7 +3,7 @@
+ \alias{happy.get.markers}
+ %- Also NEED an '\alias' for EACH other topic documented here.
+ \title{
+-%% ~~function to do ... ~~
++ ~~function to do ... ~~
+ }
+ \description{
+ %% ~~ A concise (1-5 lines) description of what the function does. ~~
+Index: bagphenotype.library/man/happy.get.markers.between.Rd
+===================================================================
+--- bagphenotype.library.orig/man/happy.get.markers.between.Rd 2010-07-30 18:49:40.161989500 +0200
++++ bagphenotype.library/man/happy.get.markers.between.Rd 2010-07-30 18:50:35.071989148 +0200
+@@ -3,7 +3,7 @@
+ \alias{happy.get.markers.between}
+ %- Also NEED an '\alias' for EACH other topic documented here.
+ \title{
+-%% ~~function to do ... ~~
++ ~~function to do ... ~~
+ }
+ \description{
+ %% ~~ A concise (1-5 lines) description of what the function does. ~~
+Index: bagphenotype.library/man/happy.get.markers.between2.Rd
+===================================================================
+--- bagphenotype.library.orig/man/happy.get.markers.between2.Rd 2010-07-30 18:49:40.571989557 +0200
++++ bagphenotype.library/man/happy.get.markers.between2.Rd 2010-07-30 18:50:35.071989148 +0200
+@@ -3,7 +3,7 @@
+ \alias{happy.get.markers.between2}
+ %- Also NEED an '\alias' for EACH other topic documented here.
+ \title{
+-%% ~~function to do ... ~~
++ ~~function to do ... ~~
+ }
+ \description{
+ %% ~~ A concise (1-5 lines) description of what the function does. ~~
+Index: bagphenotype.library/man/happy.get.next.marker.Rd
+===================================================================
+--- bagphenotype.library.orig/man/happy.get.next.marker.Rd 2010-07-30 18:49:46.951988673 +0200
++++ bagphenotype.library/man/happy.get.next.marker.Rd 2010-07-30 18:50:35.071989148 +0200
+@@ -3,7 +3,7 @@
+ \alias{happy.get.next.marker}
+ %- Also NEED an '\alias' for EACH other topic documented here.
+ \title{
+-%% ~~function to do ... ~~
++ ~~function to do ... ~~
+ }
+ \description{
+ %% ~~ A concise (1-5 lines) description of what the function does. ~~
+Index: bagphenotype.library/man/happy.get.position.Rd
+===================================================================
+--- bagphenotype.library.orig/man/happy.get.position.Rd 2010-07-30 18:49:43.441990712 +0200
++++ bagphenotype.library/man/happy.get.position.Rd 2010-07-30 18:50:35.071989148 +0200
+@@ -3,7 +3,7 @@
+ \alias{happy.get.position}
+ %- Also NEED an '\alias' for EACH other topic documented here.
+ \title{
+-%% ~~function to do ... ~~
++ ~~function to do ... ~~
+ }
+ \description{
+ %% ~~ A concise (1-5 lines) description of what the function does. ~~
+Index: bagphenotype.library/man/happy.get.previous.marker.Rd
+===================================================================
+--- bagphenotype.library.orig/man/happy.get.previous.marker.Rd 2010-07-30 18:49:45.841990171 +0200
++++ bagphenotype.library/man/happy.get.previous.marker.Rd 2010-07-30 18:50:35.071989148 +0200
+@@ -3,7 +3,7 @@
+ \alias{happy.get.previous.marker}
+ %- Also NEED an '\alias' for EACH other topic documented here.
+ \title{
+-%% ~~function to do ... ~~
++ ~~function to do ... ~~
+ }
+ \description{
+ %% ~~ A concise (1-5 lines) description of what the function does. ~~
+Index: bagphenotype.library/man/happy.has.chromosomes.Rd
+===================================================================
+--- bagphenotype.library.orig/man/happy.has.chromosomes.Rd 2010-07-30 18:49:49.501989748 +0200
++++ bagphenotype.library/man/happy.has.chromosomes.Rd 2010-07-30 18:50:35.071989148 +0200
+@@ -3,7 +3,7 @@
+ \alias{happy.has.chromosomes}
+ %- Also NEED an '\alias' for EACH other topic documented here.
+ \title{
+-%% ~~function to do ... ~~
++ ~~function to do ... ~~
+ }
+ \description{
+ %% ~~ A concise (1-5 lines) description of what the function does. ~~
+Index: bagphenotype.library/man/happy.has.marker.Rd
+===================================================================
+--- bagphenotype.library.orig/man/happy.has.marker.Rd 2010-07-30 18:49:40.011989661 +0200
++++ bagphenotype.library/man/happy.has.marker.Rd 2010-07-30 18:50:35.071989148 +0200
+@@ -3,7 +3,7 @@
+ \alias{happy.has.marker}
+ %- Also NEED an '\alias' for EACH other topic documented here.
+ \title{
+-%% ~~function to do ... ~~
++ ~~function to do ... ~~
+ }
+ \description{
+ %% ~~ A concise (1-5 lines) description of what the function does. ~~
+Index: bagphenotype.library/man/happy.has.markers.Rd
+===================================================================
+--- bagphenotype.library.orig/man/happy.has.markers.Rd 2010-07-30 18:49:48.331989983 +0200
++++ bagphenotype.library/man/happy.has.markers.Rd 2010-07-30 18:50:35.071989148 +0200
+@@ -3,7 +3,7 @@
+ \alias{happy.has.markers}
+ %- Also NEED an '\alias' for EACH other topic documented here.
+ \title{
+-%% ~~function to do ... ~~
++ ~~function to do ... ~~
+ }
+ \description{
+ %% ~~ A concise (1-5 lines) description of what the function does. ~~
+Index: bagphenotype.library/man/happy.has.subjects.Rd
+===================================================================
+--- bagphenotype.library.orig/man/happy.has.subjects.Rd 2010-07-30 18:49:46.481989845 +0200
++++ bagphenotype.library/man/happy.has.subjects.Rd 2010-07-30 18:50:35.071989148 +0200
+@@ -3,7 +3,7 @@
+ \alias{happy.has.subjects}
+ %- Also NEED an '\alias' for EACH other topic documented here.
+ \title{
+-%% ~~function to do ... ~~
++ ~~function to do ... ~~
+ }
+ \description{
+ %% ~~ A concise (1-5 lines) description of what the function does. ~~
+Index: bagphenotype.library/man/happy.interpolate.bp.Rd
+===================================================================
+--- bagphenotype.library.orig/man/happy.interpolate.bp.Rd 2010-07-30 18:49:48.701989591 +0200
++++ bagphenotype.library/man/happy.interpolate.bp.Rd 2010-07-30 18:50:35.071989148 +0200
+@@ -3,7 +3,7 @@
+ \alias{happy.interpolate.bp}
+ %- Also NEED an '\alias' for EACH other topic documented here.
+ \title{
+-%% ~~function to do ... ~~
++ ~~function to do ... ~~
+ }
+ \description{
+ %% ~~ A concise (1-5 lines) description of what the function does. ~~
+Index: bagphenotype.library/man/happy.interval.map.Rd
+===================================================================
+--- bagphenotype.library.orig/man/happy.interval.map.Rd 2010-07-30 18:49:42.321989380 +0200
++++ bagphenotype.library/man/happy.interval.map.Rd 2010-07-30 18:50:35.071989148 +0200
+@@ -3,7 +3,7 @@
+ \alias{happy.interval.map}
+ %- Also NEED an '\alias' for EACH other topic documented here.
+ \title{
+-%% ~~function to do ... ~~
++ ~~function to do ... ~~
+ }
+ \description{
+ %% ~~ A concise (1-5 lines) description of what the function does. ~~
+Index: bagphenotype.library/man/happy.list.chromosomes.Rd
+===================================================================
+--- bagphenotype.library.orig/man/happy.list.chromosomes.Rd 2010-07-30 18:49:50.841989405 +0200
++++ bagphenotype.library/man/happy.list.chromosomes.Rd 2010-07-30 18:50:35.071989148 +0200
+@@ -3,7 +3,7 @@
+ \alias{happy.list.chromosomes}
+ %- Also NEED an '\alias' for EACH other topic documented here.
+ \title{
+-%% ~~function to do ... ~~
++ ~~function to do ... ~~
+ }
+ \description{
+ %% ~~ A concise (1-5 lines) description of what the function does. ~~
+Index: bagphenotype.library/man/happy.load.markers.Rd
+===================================================================
+--- bagphenotype.library.orig/man/happy.load.markers.Rd 2010-07-30 18:49:47.731988984 +0200
++++ bagphenotype.library/man/happy.load.markers.Rd 2010-07-30 18:50:35.071989148 +0200
+@@ -3,7 +3,7 @@
+ \alias{happy.load.markers}
+ %- Also NEED an '\alias' for EACH other topic documented here.
+ \title{
+-%% ~~function to do ... ~~
++ ~~function to do ... ~~
+ }
+ \description{
+ %% ~~ A concise (1-5 lines) description of what the function does. ~~
+Index: bagphenotype.library/man/happy.make.genome.location.Rd
+===================================================================
+--- bagphenotype.library.orig/man/happy.make.genome.location.Rd 2010-07-30 18:49:41.431989446 +0200
++++ bagphenotype.library/man/happy.make.genome.location.Rd 2010-07-30 18:50:35.071989148 +0200
+@@ -3,7 +3,7 @@
+ \alias{happy.make.genome.location}
+ %- Also NEED an '\alias' for EACH other topic documented here.
+ \title{
+-%% ~~function to do ... ~~
++ ~~function to do ... ~~
+ }
+ \description{
+ %% ~~ A concise (1-5 lines) description of what the function does. ~~
+Index: bagphenotype.library/man/happy.make.step.data.Rd
+===================================================================
+--- bagphenotype.library.orig/man/happy.make.step.data.Rd 2010-07-30 18:49:50.311989259 +0200
++++ bagphenotype.library/man/happy.make.step.data.Rd 2010-07-30 18:50:35.071989148 +0200
+@@ -3,7 +3,7 @@
+ \alias{happy.make.step.data}
+ %- Also NEED an '\alias' for EACH other topic documented here.
+ \title{
+-%% ~~function to do ... ~~
++ ~~function to do ... ~~
+ }
+ \description{
+ %% ~~ A concise (1-5 lines) description of what the function does. ~~
+Index: bagphenotype.library/man/happy.plot.gscan.Rd
+===================================================================
+--- bagphenotype.library.orig/man/happy.plot.gscan.Rd 2010-07-30 18:49:52.131989482 +0200
++++ bagphenotype.library/man/happy.plot.gscan.Rd 2010-07-30 18:53:12.323238180 +0200
+@@ -3,7 +3,7 @@
+ \alias{happy.plot.gscan}
+ %- Also NEED an '\alias' for EACH other topic documented here.
+ \title{
+-%% ~~function to do ... ~~
++ ~~function to do ... ~~
+ }
+ \description{
+ %% ~~ A concise (1-5 lines) description of what the function does. ~~
+Index: bagphenotype.library/man/happy.plot.ladder.Rd
+===================================================================
+--- bagphenotype.library.orig/man/happy.plot.ladder.Rd 2010-07-30 18:49:41.581989175 +0200
++++ bagphenotype.library/man/happy.plot.ladder.Rd 2010-07-30 18:50:35.071989148 +0200
+@@ -3,7 +3,7 @@
+ \alias{happy.plot.ladder}
+ %- Also NEED an '\alias' for EACH other topic documented here.
+ \title{
+-%% ~~function to do ... ~~
++ ~~function to do ... ~~
+ }
+ \description{
+ %% ~~ A concise (1-5 lines) description of what the function does. ~~
+Index: bagphenotype.library/man/happy.plot.ladder.chr.list.Rd
+===================================================================
+--- bagphenotype.library.orig/man/happy.plot.ladder.chr.list.Rd 2010-07-30 18:49:47.191989712 +0200
++++ bagphenotype.library/man/happy.plot.ladder.chr.list.Rd 2010-07-30 18:50:35.071989148 +0200
+@@ -3,7 +3,7 @@
+ \alias{happy.plot.ladder.chr.list}
+ %- Also NEED an '\alias' for EACH other topic documented here.
+ \title{
+-%% ~~function to do ... ~~
++ ~~function to do ... ~~
+ }
+ \description{
+ %% ~~ A concise (1-5 lines) description of what the function does. ~~
+Index: bagphenotype.library/man/happy.which.markers.Rd
+===================================================================
+--- bagphenotype.library.orig/man/happy.which.markers.Rd 2010-07-30 18:49:43.061989492 +0200
++++ bagphenotype.library/man/happy.which.markers.Rd 2010-07-30 18:50:35.071989148 +0200
+@@ -3,7 +3,7 @@
+ \alias{happy.which.markers}
+ %- Also NEED an '\alias' for EACH other topic documented here.
+ \title{
+-%% ~~function to do ... ~~
++ ~~function to do ... ~~
+ }
+ \description{
+ %% ~~ A concise (1-5 lines) description of what the function does. ~~
+Index: bagphenotype.library/man/hasS3method.Rd
+===================================================================
+--- bagphenotype.library.orig/man/hasS3method.Rd 2010-07-30 18:49:45.461989403 +0200
++++ bagphenotype.library/man/hasS3method.Rd 2010-07-30 18:50:35.071989148 +0200
+@@ -3,7 +3,7 @@
+ \alias{hasS3method}
+ %- Also NEED an '\alias' for EACH other topic documented here.
+ \title{
+-%% ~~function to do ... ~~
++ ~~function to do ... ~~
+ }
+ \description{
+ %% ~~ A concise (1-5 lines) description of what the function does. ~~
+Index: bagphenotype.library/man/hasS4method.Rd
+===================================================================
+--- bagphenotype.library.orig/man/hasS4method.Rd 2010-07-30 18:49:44.831989459 +0200
++++ bagphenotype.library/man/hasS4method.Rd 2010-07-30 18:50:35.071989148 +0200
+@@ -3,7 +3,7 @@
+ \alias{hasS4method}
+ %- Also NEED an '\alias' for EACH other topic documented here.
+ \title{
+-%% ~~function to do ... ~~
++ ~~function to do ... ~~
+ }
+ \description{
+ %% ~~ A concise (1-5 lines) description of what the function does. ~~
+Index: bagphenotype.library/man/hgenotype.as.Rd
+===================================================================
+--- bagphenotype.library.orig/man/hgenotype.as.Rd 2010-07-30 18:49:51.441989612 +0200
++++ bagphenotype.library/man/hgenotype.as.Rd 2010-07-30 18:50:35.071989148 +0200
+@@ -3,7 +3,7 @@
+ \alias{hgenotype.as}
+ %- Also NEED an '\alias' for EACH other topic documented here.
+ \title{
+-%% ~~function to do ... ~~
++ ~~function to do ... ~~
+ }
+ \description{
+ %% ~~ A concise (1-5 lines) description of what the function does. ~~
+Index: bagphenotype.library/man/hgenotype.to.count.Rd
+===================================================================
+--- bagphenotype.library.orig/man/hgenotype.to.count.Rd 2010-07-30 18:49:47.321989476 +0200
++++ bagphenotype.library/man/hgenotype.to.count.Rd 2010-07-30 18:50:35.071989148 +0200
+@@ -3,7 +3,7 @@
+ \alias{hgenotype.to.count}
+ %- Also NEED an '\alias' for EACH other topic documented here.
+ \title{
+-%% ~~function to do ... ~~
++ ~~function to do ... ~~
+ }
+ \description{
+ %% ~~ A concise (1-5 lines) description of what the function does. ~~
+Index: bagphenotype.library/man/hgenotype.to.factor.Rd
+===================================================================
+--- bagphenotype.library.orig/man/hgenotype.to.factor.Rd 2010-07-30 18:49:52.201989744 +0200
++++ bagphenotype.library/man/hgenotype.to.factor.Rd 2010-07-30 18:50:35.071989148 +0200
+@@ -3,7 +3,7 @@
+ \alias{hgenotype.to.factor}
+ %- Also NEED an '\alias' for EACH other topic documented here.
+ \title{
+-%% ~~function to do ... ~~
++ ~~function to do ... ~~
+ }
+ \description{
+ %% ~~ A concise (1-5 lines) description of what the function does. ~~
+Index: bagphenotype.library/man/hgenotype.to.heir.Rd
+===================================================================
+--- bagphenotype.library.orig/man/hgenotype.to.heir.Rd 2010-07-30 18:49:44.041990872 +0200
++++ bagphenotype.library/man/hgenotype.to.heir.Rd 2010-07-30 18:50:35.071989148 +0200
+@@ -3,7 +3,7 @@
+ \alias{hgenotype.to.heir}
+ %- Also NEED an '\alias' for EACH other topic documented here.
+ \title{
+-%% ~~function to do ... ~~
++ ~~function to do ... ~~
+ }
+ \description{
+ %% ~~ A concise (1-5 lines) description of what the function does. ~~
+Index: bagphenotype.library/man/hpd.Rd
+===================================================================
+--- bagphenotype.library.orig/man/hpd.Rd 2010-07-30 18:49:48.921989222 +0200
++++ bagphenotype.library/man/hpd.Rd 2010-07-30 18:50:35.071989148 +0200
+@@ -3,7 +3,7 @@
+ \alias{hpd}
+ %- Also NEED an '\alias' for EACH other topic documented here.
+ \title{
+-%% ~~function to do ... ~~
++ ~~function to do ... ~~
+ }
+ \description{
+ %% ~~ A concise (1-5 lines) description of what the function does. ~~
+Index: bagphenotype.library/man/incidence.matrix.Rd
+===================================================================
+--- bagphenotype.library.orig/man/incidence.matrix.Rd 2010-07-30 18:49:48.631989913 +0200
++++ bagphenotype.library/man/incidence.matrix.Rd 2010-07-30 18:50:35.071989148 +0200
+@@ -3,7 +3,7 @@
+ \alias{incidence.matrix}
+ %- Also NEED an '\alias' for EACH other topic documented here.
+ \title{
+-%% ~~function to do ... ~~
++ ~~function to do ... ~~
+ }
+ \description{
+ %% ~~ A concise (1-5 lines) description of what the function does. ~~
+Index: bagphenotype.library/man/indep.factor.cov.Rd
+===================================================================
+--- bagphenotype.library.orig/man/indep.factor.cov.Rd 2010-07-30 18:49:40.941989907 +0200
++++ bagphenotype.library/man/indep.factor.cov.Rd 2010-07-30 18:50:35.071989148 +0200
+@@ -3,7 +3,7 @@
+ \alias{indep.factor.cov}
+ %- Also NEED an '\alias' for EACH other topic documented here.
+ \title{
+-%% ~~function to do ... ~~
++ ~~function to do ... ~~
+ }
+ \description{
+ %% ~~ A concise (1-5 lines) description of what the function does. ~~
+Index: bagphenotype.library/man/init.boot.data.Rd
+===================================================================
+--- bagphenotype.library.orig/man/init.boot.data.Rd 2010-07-30 18:49:46.101989961 +0200
++++ bagphenotype.library/man/init.boot.data.Rd 2010-07-30 18:50:35.071989148 +0200
+@@ -3,7 +3,7 @@
+ \alias{init.boot.data}
+ %- Also NEED an '\alias' for EACH other topic documented here.
+ \title{
+-%% ~~function to do ... ~~
++ ~~function to do ... ~~
+ }
+ \description{
+ %% ~~ A concise (1-5 lines) description of what the function does. ~~
+Index: bagphenotype.library/man/insert.cols.Rd
+===================================================================
+--- bagphenotype.library.orig/man/insert.cols.Rd 2010-07-30 18:49:50.551989610 +0200
++++ bagphenotype.library/man/insert.cols.Rd 2010-07-30 18:50:35.071989148 +0200
+@@ -3,7 +3,7 @@
+ \alias{insert.cols}
+ %- Also NEED an '\alias' for EACH other topic documented here.
+ \title{
+-%% ~~function to do ... ~~
++ ~~function to do ... ~~
+ }
+ \description{
+ %% ~~ A concise (1-5 lines) description of what the function does. ~~
+Index: bagphenotype.library/man/interpolate.Rd
+===================================================================
+--- bagphenotype.library.orig/man/interpolate.Rd 2010-07-30 18:49:41.951988647 +0200
++++ bagphenotype.library/man/interpolate.Rd 2010-07-30 18:50:35.071989148 +0200
+@@ -3,7 +3,7 @@
+ \alias{interpolate}
+ %- Also NEED an '\alias' for EACH other topic documented here.
+ \title{
+-%% ~~function to do ... ~~
++ ~~function to do ... ~~
+ }
+ \description{
+ %% ~~ A concise (1-5 lines) description of what the function does. ~~
+Index: bagphenotype.library/man/interpolate.Sys.env.Rd
+===================================================================
+--- bagphenotype.library.orig/man/interpolate.Sys.env.Rd 2010-07-30 18:49:51.291988657 +0200
++++ bagphenotype.library/man/interpolate.Sys.env.Rd 2010-07-30 18:50:35.071989148 +0200
+@@ -3,7 +3,7 @@
+ \alias{interpolate.Sys.env}
+ %- Also NEED an '\alias' for EACH other topic documented here.
+ \title{
+-%% ~~function to do ... ~~
++ ~~function to do ... ~~
+ }
+ \description{
+ %% ~~ A concise (1-5 lines) description of what the function does. ~~
+Index: bagphenotype.library/man/is.formula.Rd
+===================================================================
+--- bagphenotype.library.orig/man/is.formula.Rd 2010-07-30 18:49:49.261989763 +0200
++++ bagphenotype.library/man/is.formula.Rd 2010-07-30 18:50:35.071989148 +0200
+@@ -3,7 +3,7 @@
+ \alias{is.formula}
+ %- Also NEED an '\alias' for EACH other topic documented here.
+ \title{
+-%% ~~function to do ... ~~
++ ~~function to do ... ~~
+ }
+ \description{
+ %% ~~ A concise (1-5 lines) description of what the function does. ~~
+Index: bagphenotype.library/man/is.informative.predictor.Rd
+===================================================================
+--- bagphenotype.library.orig/man/is.informative.predictor.Rd 2010-07-30 18:49:50.761989855 +0200
++++ bagphenotype.library/man/is.informative.predictor.Rd 2010-07-30 18:50:35.071989148 +0200
+@@ -3,7 +3,7 @@
+ \alias{is.informative.predictor}
+ %- Also NEED an '\alias' for EACH other topic documented here.
+ \title{
+-%% ~~function to do ... ~~
++ ~~function to do ... ~~
+ }
+ \description{
+ %% ~~ A concise (1-5 lines) description of what the function does. ~~
+Index: bagphenotype.library/man/is.null.string.Rd
+===================================================================
+--- bagphenotype.library.orig/man/is.null.string.Rd 2010-07-30 18:49:42.701989702 +0200
++++ bagphenotype.library/man/is.null.string.Rd 2010-07-30 18:50:35.071989148 +0200
+@@ -3,7 +3,7 @@
+ \alias{is.null.string}
+ %- Also NEED an '\alias' for EACH other topic documented here.
+ \title{
+-%% ~~function to do ... ~~
++ ~~function to do ... ~~
+ }
+ \description{
+ %% ~~ A concise (1-5 lines) description of what the function does. ~~
+Index: bagphenotype.library/man/is.nullOrEmpty.Rd
+===================================================================
+--- bagphenotype.library.orig/man/is.nullOrEmpty.Rd 2010-07-30 18:49:44.701989442 +0200
++++ bagphenotype.library/man/is.nullOrEmpty.Rd 2010-07-30 18:50:35.071989148 +0200
+@@ -3,7 +3,7 @@
+ \alias{is.nullOrEmpty}
+ %- Also NEED an '\alias' for EACH other topic documented here.
+ \title{
+-%% ~~function to do ... ~~
++ ~~function to do ... ~~
+ }
+ \description{
+ %% ~~ A concise (1-5 lines) description of what the function does. ~~
+Index: bagphenotype.library/man/list.get.Rd
+===================================================================
+--- bagphenotype.library.orig/man/list.get.Rd 2010-07-30 18:49:45.191989060 +0200
++++ bagphenotype.library/man/list.get.Rd 2010-07-30 18:50:35.071989148 +0200
+@@ -3,7 +3,7 @@
+ \alias{list.get}
+ %- Also NEED an '\alias' for EACH other topic documented here.
+ \title{
+-%% ~~function to do ... ~~
++ ~~function to do ... ~~
+ }
+ \description{
+ %% ~~ A concise (1-5 lines) description of what the function does. ~~
+Index: bagphenotype.library/man/list.has.Rd
+===================================================================
+--- bagphenotype.library.orig/man/list.has.Rd 2010-07-30 18:49:47.941989557 +0200
++++ bagphenotype.library/man/list.has.Rd 2010-07-30 18:50:35.071989148 +0200
+@@ -3,7 +3,7 @@
+ \alias{list.has}
+ %- Also NEED an '\alias' for EACH other topic documented here.
+ \title{
+-%% ~~function to do ... ~~
++ ~~function to do ... ~~
+ }
+ \description{
+ %% ~~ A concise (1-5 lines) description of what the function does. ~~
+Index: bagphenotype.library/man/lm.multiresponse.Rd
+===================================================================
+--- bagphenotype.library.orig/man/lm.multiresponse.Rd 2010-07-30 18:49:41.741989746 +0200
++++ bagphenotype.library/man/lm.multiresponse.Rd 2010-07-30 18:50:35.071989148 +0200
+@@ -3,7 +3,7 @@
+ \alias{lm.multiresponse}
+ %- Also NEED an '\alias' for EACH other topic documented here.
+ \title{
+-%% ~~function to do ... ~~
++ ~~function to do ... ~~
+ }
+ \description{
+ %% ~~ A concise (1-5 lines) description of what the function does. ~~
+Index: bagphenotype.library/man/lm.null.scan.Rd
+===================================================================
+--- bagphenotype.library.orig/man/lm.null.scan.Rd 2010-07-30 18:49:43.361989800 +0200
++++ bagphenotype.library/man/lm.null.scan.Rd 2010-07-30 18:50:35.071989148 +0200
+@@ -3,7 +3,7 @@
+ \alias{lm.null.scan}
+ %- Also NEED an '\alias' for EACH other topic documented here.
+ \title{
+-%% ~~function to do ... ~~
++ ~~function to do ... ~~
+ }
+ \description{
+ %% ~~ A concise (1-5 lines) description of what the function does. ~~
+Index: bagphenotype.library/man/lm.permute.Rd
+===================================================================
+--- bagphenotype.library.orig/man/lm.permute.Rd 2010-07-30 18:49:42.021989647 +0200
++++ bagphenotype.library/man/lm.permute.Rd 2010-07-30 18:50:35.071989148 +0200
+@@ -3,7 +3,7 @@
+ \alias{lm.permute}
+ %- Also NEED an '\alias' for EACH other topic documented here.
+ \title{
+-%% ~~function to do ... ~~
++ ~~function to do ... ~~
+ }
+ \description{
+ %% ~~ A concise (1-5 lines) description of what the function does. ~~
+Index: bagphenotype.library/man/lm.permute.scan.Rd
+===================================================================
+--- bagphenotype.library.orig/man/lm.permute.scan.Rd 2010-07-30 18:49:46.401989059 +0200
++++ bagphenotype.library/man/lm.permute.scan.Rd 2010-07-30 18:50:35.071989148 +0200
+@@ -3,7 +3,7 @@
+ \alias{lm.permute.scan}
+ %- Also NEED an '\alias' for EACH other topic documented here.
+ \title{
+-%% ~~function to do ... ~~
++ ~~function to do ... ~~
+ }
+ \description{
+ %% ~~ A concise (1-5 lines) description of what the function does. ~~
+Index: bagphenotype.library/man/load.gscan.Rd
+===================================================================
+--- bagphenotype.library.orig/man/load.gscan.Rd 2010-07-30 18:49:51.371989431 +0200
++++ bagphenotype.library/man/load.gscan.Rd 2010-07-30 18:50:35.071989148 +0200
+@@ -3,7 +3,7 @@
+ \alias{load.gscan}
+ %- Also NEED an '\alias' for EACH other topic documented here.
+ \title{
+-%% ~~function to do ... ~~
++ ~~function to do ... ~~
+ }
+ \description{
+ %% ~~ A concise (1-5 lines) description of what the function does. ~~
+Index: bagphenotype.library/man/make.locus.colnames.Rd
+===================================================================
+--- bagphenotype.library.orig/man/make.locus.colnames.Rd 2010-07-30 18:49:44.081989976 +0200
++++ bagphenotype.library/man/make.locus.colnames.Rd 2010-07-30 18:50:35.071989148 +0200
+@@ -3,7 +3,7 @@
+ \alias{make.locus.colnames}
+ %- Also NEED an '\alias' for EACH other topic documented here.
+ \title{
+-%% ~~function to do ... ~~
++ ~~function to do ... ~~
+ }
+ \description{
+ %% ~~ A concise (1-5 lines) description of what the function does. ~~
+Index: bagphenotype.library/man/make.locus.string.Rd
+===================================================================
+--- bagphenotype.library.orig/man/make.locus.string.Rd 2010-07-30 18:49:46.561989179 +0200
++++ bagphenotype.library/man/make.locus.string.Rd 2010-07-30 18:50:35.071989148 +0200
+@@ -3,7 +3,7 @@
+ \alias{make.locus.string}
+ %- Also NEED an '\alias' for EACH other topic documented here.
+ \title{
+-%% ~~function to do ... ~~
++ ~~function to do ... ~~
+ }
+ \description{
+ %% ~~ A concise (1-5 lines) description of what the function does. ~~
+Index: bagphenotype.library/man/make.phenotype.config.Rd
+===================================================================
+--- bagphenotype.library.orig/man/make.phenotype.config.Rd 2010-07-30 18:49:48.031989771 +0200
++++ bagphenotype.library/man/make.phenotype.config.Rd 2010-07-30 18:50:35.071989148 +0200
+@@ -3,7 +3,7 @@
+ \alias{make.phenotype.config}
+ %- Also NEED an '\alias' for EACH other topic documented here.
+ \title{
+-%% ~~function to do ... ~~
++ ~~function to do ... ~~
+ }
+ \description{
+ %% ~~ A concise (1-5 lines) description of what the function does. ~~
+Index: bagphenotype.library/man/make.reduce.dmat.fun.Rd
+===================================================================
+--- bagphenotype.library.orig/man/make.reduce.dmat.fun.Rd 2010-07-30 18:49:51.741989521 +0200
++++ bagphenotype.library/man/make.reduce.dmat.fun.Rd 2010-07-30 18:50:35.071989148 +0200
+@@ -3,7 +3,7 @@
+ \alias{make.reduce.dmat.fun}
+ %- Also NEED an '\alias' for EACH other topic documented here.
+ \title{
+-%% ~~function to do ... ~~
++ ~~function to do ... ~~
+ }
+ \description{
+ %% ~~ A concise (1-5 lines) description of what the function does. ~~
+Index: bagphenotype.library/man/make.rma.incidence.matrix.Rd
+===================================================================
+--- bagphenotype.library.orig/man/make.rma.incidence.matrix.Rd 2010-07-30 18:49:44.481989766 +0200
++++ bagphenotype.library/man/make.rma.incidence.matrix.Rd 2010-07-30 18:50:35.071989148 +0200
+@@ -3,7 +3,7 @@
+ \alias{make.rma.incidence.matrix}
+ %- Also NEED an '\alias' for EACH other topic documented here.
+ \title{
+-%% ~~function to do ... ~~
++ ~~function to do ... ~~
+ }
+ \description{
+ %% ~~ A concise (1-5 lines) description of what the function does. ~~
+Index: bagphenotype.library/man/make.step.data.Rd
+===================================================================
+--- bagphenotype.library.orig/man/make.step.data.Rd 2010-07-30 18:49:42.841989892 +0200
++++ bagphenotype.library/man/make.step.data.Rd 2010-07-30 18:50:35.071989148 +0200
+@@ -3,7 +3,7 @@
+ \alias{make.step.data}
+ %- Also NEED an '\alias' for EACH other topic documented here.
+ \title{
+-%% ~~function to do ... ~~
++ ~~function to do ... ~~
+ }
+ \description{
+ %% ~~ A concise (1-5 lines) description of what the function does. ~~
+Index: bagphenotype.library/man/map.eq.Rd
+===================================================================
+--- bagphenotype.library.orig/man/map.eq.Rd 2010-07-30 18:49:43.801989012 +0200
++++ bagphenotype.library/man/map.eq.Rd 2010-07-30 18:50:35.071989148 +0200
+@@ -3,7 +3,7 @@
+ \alias{map.eq}
+ %- Also NEED an '\alias' for EACH other topic documented here.
+ \title{
+-%% ~~function to do ... ~~
++ ~~function to do ... ~~
+ }
+ \description{
+ %% ~~ A concise (1-5 lines) description of what the function does. ~~
+Index: bagphenotype.library/man/mdlist.get.Rd
+===================================================================
+--- bagphenotype.library.orig/man/mdlist.get.Rd 2010-07-30 18:49:49.791989230 +0200
++++ bagphenotype.library/man/mdlist.get.Rd 2010-07-30 18:50:35.071989148 +0200
+@@ -3,7 +3,7 @@
+ \alias{mdlist.get}
+ %- Also NEED an '\alias' for EACH other topic documented here.
+ \title{
+-%% ~~function to do ... ~~
++ ~~function to do ... ~~
+ }
+ \description{
+ %% ~~ A concise (1-5 lines) description of what the function does. ~~
+Index: bagphenotype.library/man/mdlist.has.Rd
+===================================================================
+--- bagphenotype.library.orig/man/mdlist.has.Rd 2010-07-30 18:49:42.911989274 +0200
++++ bagphenotype.library/man/mdlist.has.Rd 2010-07-30 18:50:35.071989148 +0200
+@@ -3,7 +3,7 @@
+ \alias{mdlist.has}
+ %- Also NEED an '\alias' for EACH other topic documented here.
+ \title{
+-%% ~~function to do ... ~~
++ ~~function to do ... ~~
+ }
+ \description{
+ %% ~~ A concise (1-5 lines) description of what the function does. ~~
+Index: bagphenotype.library/man/mdlist.put.Rd
+===================================================================
+--- bagphenotype.library.orig/man/mdlist.put.Rd 2010-07-30 18:49:44.911989251 +0200
++++ bagphenotype.library/man/mdlist.put.Rd 2010-07-30 18:50:35.071989148 +0200
+@@ -3,7 +3,7 @@
+ \alias{mdlist.put}
+ %- Also NEED an '\alias' for EACH other topic documented here.
+ \title{
+-%% ~~function to do ... ~~
++ ~~function to do ... ~~
+ }
+ \description{
+ %% ~~ A concise (1-5 lines) description of what the function does. ~~
+Index: bagphenotype.library/man/my.the.locus.Rd
+===================================================================
+--- bagphenotype.library.orig/man/my.the.locus.Rd 2010-07-30 18:49:52.351988916 +0200
++++ bagphenotype.library/man/my.the.locus.Rd 2010-07-30 18:50:35.071989148 +0200
+@@ -3,7 +3,7 @@
+ \alias{my.the.locus}
+ \docType{data}
+ \title{
+-%% ~~ data name/kind ... ~~
++ ~~ data name/kind ... ~~
+ }
+ \description{
+ %% ~~ A concise (1-5 lines) description of the dataset. ~~
+Index: bagphenotype.library/man/normalise.Rd
+===================================================================
+--- bagphenotype.library.orig/man/normalise.Rd 2010-07-30 18:49:47.251989252 +0200
++++ bagphenotype.library/man/normalise.Rd 2010-07-30 18:50:35.071989148 +0200
+@@ -3,7 +3,7 @@
+ \alias{normalise}
+ %- Also NEED an '\alias' for EACH other topic documented here.
+ \title{
+-%% ~~function to do ... ~~
++ ~~function to do ... ~~
+ }
+ \description{
+ %% ~~ A concise (1-5 lines) description of what the function does. ~~
+Index: bagphenotype.library/man/normalize.Rd
+===================================================================
+--- bagphenotype.library.orig/man/normalize.Rd 2010-07-30 18:49:42.241989521 +0200
++++ bagphenotype.library/man/normalize.Rd 2010-07-30 18:50:35.081989622 +0200
+@@ -3,7 +3,7 @@
+ \alias{normalize}
+ %- Also NEED an '\alias' for EACH other topic documented here.
+ \title{
+-%% ~~function to do ... ~~
++ ~~function to do ... ~~
+ }
+ \description{
+ %% ~~ A concise (1-5 lines) description of what the function does. ~~
+Index: bagphenotype.library/man/parse.expanded.formula.Rd
+===================================================================
+--- bagphenotype.library.orig/man/parse.expanded.formula.Rd 2010-07-30 18:49:46.671989840 +0200
++++ bagphenotype.library/man/parse.expanded.formula.Rd 2010-07-30 18:50:35.081989622 +0200
+@@ -3,7 +3,7 @@
+ \alias{parse.expanded.formula}
+ %- Also NEED an '\alias' for EACH other topic documented here.
+ \title{
+-%% ~~function to do ... ~~
++ ~~function to do ... ~~
+ }
+ \description{
+ %% ~~ A concise (1-5 lines) description of what the function does. ~~
+Index: bagphenotype.library/man/parse.genome.distance.Rd
+===================================================================
+--- bagphenotype.library.orig/man/parse.genome.distance.Rd 2010-07-30 18:49:45.251989649 +0200
++++ bagphenotype.library/man/parse.genome.distance.Rd 2010-07-30 18:50:35.081989622 +0200
+@@ -3,7 +3,7 @@
+ \alias{parse.genome.distance}
+ %- Also NEED an '\alias' for EACH other topic documented here.
+ \title{
+-%% ~~function to do ... ~~
++ ~~function to do ... ~~
+ }
+ \description{
+ %% ~~ A concise (1-5 lines) description of what the function does. ~~
+Index: bagphenotype.library/man/permutation.fit.Rd
+===================================================================
+--- bagphenotype.library.orig/man/permutation.fit.Rd 2010-07-30 18:49:52.271990028 +0200
++++ bagphenotype.library/man/permutation.fit.Rd 2010-07-30 18:50:35.081989622 +0200
+@@ -3,7 +3,7 @@
+ \alias{permutation.fit}
+ %- Also NEED an '\alias' for EACH other topic documented here.
+ \title{
+-%% ~~function to do ... ~~
++ ~~function to do ... ~~
+ }
+ \description{
+ %% ~~ A concise (1-5 lines) description of what the function does. ~~
+Index: bagphenotype.library/man/permutation.matrix.Rd
+===================================================================
+--- bagphenotype.library.orig/man/permutation.matrix.Rd 2010-07-30 18:49:40.231989450 +0200
++++ bagphenotype.library/man/permutation.matrix.Rd 2010-07-30 18:50:35.081989622 +0200
+@@ -3,7 +3,7 @@
+ \alias{permutation.matrix}
+ %- Also NEED an '\alias' for EACH other topic documented here.
+ \title{
+-%% ~~function to do ... ~~
++ ~~function to do ... ~~
+ }
+ \description{
+ %% ~~ A concise (1-5 lines) description of what the function does. ~~
+Index: bagphenotype.library/man/poiplot.Rd
+===================================================================
+--- bagphenotype.library.orig/man/poiplot.Rd 2010-07-30 18:49:43.651989039 +0200
++++ bagphenotype.library/man/poiplot.Rd 2010-07-30 18:50:35.081989622 +0200
+@@ -3,7 +3,7 @@
+ \alias{poiplot}
+ %- Also NEED an '\alias' for EACH other topic documented here.
+ \title{
+-%% ~~function to do ... ~~
++ ~~function to do ... ~~
+ }
+ \description{
+ %% ~~ A concise (1-5 lines) description of what the function does. ~~
+Index: bagphenotype.library/man/polygonh.Rd
+===================================================================
+--- bagphenotype.library.orig/man/polygonh.Rd 2010-07-30 18:49:45.591989900 +0200
++++ bagphenotype.library/man/polygonh.Rd 2010-07-30 18:50:35.081989622 +0200
+@@ -3,7 +3,7 @@
+ \alias{polygonh}
+ %- Also NEED an '\alias' for EACH other topic documented here.
+ \title{
+-%% ~~function to do ... ~~
++ ~~function to do ... ~~
+ }
+ \description{
+ %% ~~ A concise (1-5 lines) description of what the function does. ~~
+Index: bagphenotype.library/man/pop.back.Rd
+===================================================================
+--- bagphenotype.library.orig/man/pop.back.Rd 2010-07-30 18:49:50.871989314 +0200
++++ bagphenotype.library/man/pop.back.Rd 2010-07-30 18:50:35.081989622 +0200
+@@ -3,7 +3,7 @@
+ \alias{pop.back}
+ %- Also NEED an '\alias' for EACH other topic documented here.
+ \title{
+-%% ~~function to do ... ~~
++ ~~function to do ... ~~
+ }
+ \description{
+ %% ~~ A concise (1-5 lines) description of what the function does. ~~
+Index: bagphenotype.library/man/pop.front.Rd
+===================================================================
+--- bagphenotype.library.orig/man/pop.front.Rd 2010-07-30 18:49:49.741989449 +0200
++++ bagphenotype.library/man/pop.front.Rd 2010-07-30 18:50:35.081989622 +0200
+@@ -3,7 +3,7 @@
+ \alias{pop.front}
+ %- Also NEED an '\alias' for EACH other topic documented here.
+ \title{
+-%% ~~function to do ... ~~
++ ~~function to do ... ~~
+ }
+ \description{
+ %% ~~ A concise (1-5 lines) description of what the function does. ~~
+Index: bagphenotype.library/man/precompute.transformation.Rd
+===================================================================
+--- bagphenotype.library.orig/man/precompute.transformation.Rd 2010-07-30 18:49:41.041989885 +0200
++++ bagphenotype.library/man/precompute.transformation.Rd 2010-07-30 18:50:35.081989622 +0200
+@@ -3,7 +3,7 @@
+ \alias{precompute.transformation}
+ %- Also NEED an '\alias' for EACH other topic documented here.
+ \title{
+-%% ~~function to do ... ~~
++ ~~function to do ... ~~
+ }
+ \description{
+ %% ~~ A concise (1-5 lines) description of what the function does. ~~
+Index: bagphenotype.library/man/push.back.Rd
+===================================================================
+--- bagphenotype.library.orig/man/push.back.Rd 2010-07-30 18:49:51.021989445 +0200
++++ bagphenotype.library/man/push.back.Rd 2010-07-30 18:50:35.081989622 +0200
+@@ -3,7 +3,7 @@
+ \alias{push.back}
+ %- Also NEED an '\alias' for EACH other topic documented here.
+ \title{
+-%% ~~function to do ... ~~
++ ~~function to do ... ~~
+ }
+ \description{
+ %% ~~ A concise (1-5 lines) description of what the function does. ~~
+Index: bagphenotype.library/man/push.front.Rd
+===================================================================
+--- bagphenotype.library.orig/man/push.front.Rd 2010-07-30 18:49:46.731990033 +0200
++++ bagphenotype.library/man/push.front.Rd 2010-07-30 18:50:35.081989622 +0200
+@@ -3,7 +3,7 @@
+ \alias{push.front}
+ %- Also NEED an '\alias' for EACH other topic documented here.
+ \title{
+-%% ~~function to do ... ~~
++ ~~function to do ... ~~
+ }
+ \description{
+ %% ~~ A concise (1-5 lines) description of what the function does. ~~
+Index: bagphenotype.library/man/read.configfile.Rd
+===================================================================
+--- bagphenotype.library.orig/man/read.configfile.Rd 2010-07-30 18:49:45.741990211 +0200
++++ bagphenotype.library/man/read.configfile.Rd 2010-07-30 18:50:35.081989622 +0200
+@@ -3,7 +3,7 @@
+ \alias{read.configfile}
+ %- Also NEED an '\alias' for EACH other topic documented here.
+ \title{
+-%% ~~function to do ... ~~
++ ~~function to do ... ~~
+ }
+ \description{
+ %% ~~ A concise (1-5 lines) description of what the function does. ~~
+Index: bagphenotype.library/man/read.lines.Rd
+===================================================================
+--- bagphenotype.library.orig/man/read.lines.Rd 2010-07-30 18:49:44.761989413 +0200
++++ bagphenotype.library/man/read.lines.Rd 2010-07-30 18:50:35.081989622 +0200
+@@ -3,7 +3,7 @@
+ \alias{read.lines}
+ %- Also NEED an '\alias' for EACH other topic documented here.
+ \title{
+-%% ~~function to do ... ~~
++ ~~function to do ... ~~
+ }
+ \description{
+ %% ~~ A concise (1-5 lines) description of what the function does. ~~
+Index: bagphenotype.library/man/read.menu.Rd
+===================================================================
+--- bagphenotype.library.orig/man/read.menu.Rd 2010-07-30 18:49:50.801989592 +0200
++++ bagphenotype.library/man/read.menu.Rd 2010-07-30 18:50:35.081989622 +0200
+@@ -3,7 +3,7 @@
+ \alias{read.menu}
+ %- Also NEED an '\alias' for EACH other topic documented here.
+ \title{
+-%% ~~function to do ... ~~
++ ~~function to do ... ~~
+ }
+ \description{
+ %% ~~ A concise (1-5 lines) description of what the function does. ~~
+Index: bagphenotype.library/man/read.peaks.file.Rd
+===================================================================
+--- bagphenotype.library.orig/man/read.peaks.file.Rd 2010-07-30 18:49:48.401989183 +0200
++++ bagphenotype.library/man/read.peaks.file.Rd 2010-07-30 18:50:35.081989622 +0200
+@@ -3,7 +3,7 @@
+ \alias{read.peaks.file}
+ %- Also NEED an '\alias' for EACH other topic documented here.
+ \title{
+-%% ~~function to do ... ~~
++ ~~function to do ... ~~
+ }
+ \description{
+ %% ~~ A concise (1-5 lines) description of what the function does. ~~
+Index: bagphenotype.library/man/read.rma.file.Rd
+===================================================================
+--- bagphenotype.library.orig/man/read.rma.file.Rd 2010-07-30 18:49:49.951988770 +0200
++++ bagphenotype.library/man/read.rma.file.Rd 2010-07-30 18:50:35.081989622 +0200
+@@ -3,7 +3,7 @@
+ \alias{read.rma.file}
+ %- Also NEED an '\alias' for EACH other topic documented here.
+ \title{
+-%% ~~function to do ... ~~
++ ~~function to do ... ~~
+ }
+ \description{
+ %% ~~ A concise (1-5 lines) description of what the function does. ~~
+Index: bagphenotype.library/man/read.rma.incidence.matrix.Rd
+===================================================================
+--- bagphenotype.library.orig/man/read.rma.incidence.matrix.Rd 2010-07-30 18:49:49.181989089 +0200
++++ bagphenotype.library/man/read.rma.incidence.matrix.Rd 2010-07-30 18:50:35.081989622 +0200
+@@ -3,7 +3,7 @@
+ \alias{read.rma.incidence.matrix}
+ %- Also NEED an '\alias' for EACH other topic documented here.
+ \title{
+-%% ~~function to do ... ~~
++ ~~function to do ... ~~
+ }
+ \description{
+ %% ~~ A concise (1-5 lines) description of what the function does. ~~
+Index: bagphenotype.library/man/read.rmip.file.Rd
+===================================================================
+--- bagphenotype.library.orig/man/read.rmip.file.Rd 2010-07-30 18:49:40.991989014 +0200
++++ bagphenotype.library/man/read.rmip.file.Rd 2010-07-30 18:50:35.081989622 +0200
+@@ -3,7 +3,7 @@
+ \alias{read.rmip.file}
+ %- Also NEED an '\alias' for EACH other topic documented here.
+ \title{
+-%% ~~function to do ... ~~
++ ~~function to do ... ~~
+ }
+ \description{
+ %% ~~ A concise (1-5 lines) description of what the function does. ~~
+Index: bagphenotype.library/man/read.scan.file.Rd
+===================================================================
+--- bagphenotype.library.orig/man/read.scan.file.Rd 2010-07-30 18:49:41.801989622 +0200
++++ bagphenotype.library/man/read.scan.file.Rd 2010-07-30 18:50:35.081989622 +0200
+@@ -3,7 +3,7 @@
+ \alias{read.scan.file}
+ %- Also NEED an '\alias' for EACH other topic documented here.
+ \title{
+-%% ~~function to do ... ~~
++ ~~function to do ... ~~
+ }
+ \description{
+ %% ~~ A concise (1-5 lines) description of what the function does. ~~
+Index: bagphenotype.library/man/recode.factors.Rd
+===================================================================
+--- bagphenotype.library.orig/man/recode.factors.Rd 2010-07-30 18:49:45.521989531 +0200
++++ bagphenotype.library/man/recode.factors.Rd 2010-07-30 18:50:35.081989622 +0200
+@@ -3,7 +3,7 @@
+ \alias{recode.factors}
+ %- Also NEED an '\alias' for EACH other topic documented here.
+ \title{
+-%% ~~function to do ... ~~
++ ~~function to do ... ~~
+ }
+ \description{
+ %% ~~ A concise (1-5 lines) description of what the function does. ~~
+Index: bagphenotype.library/man/recode.factors.old.Rd
+===================================================================
+--- bagphenotype.library.orig/man/recode.factors.old.Rd 2010-07-30 18:49:51.071989222 +0200
++++ bagphenotype.library/man/recode.factors.old.Rd 2010-07-30 18:50:35.081989622 +0200
+@@ -3,7 +3,7 @@
+ \alias{recode.factors.old}
+ %- Also NEED an '\alias' for EACH other topic documented here.
+ \title{
+-%% ~~function to do ... ~~
++ ~~function to do ... ~~
+ }
+ \description{
+ %% ~~ A concise (1-5 lines) description of what the function does. ~~
+Index: bagphenotype.library/man/reduce.dim.Rd
+===================================================================
+--- bagphenotype.library.orig/man/reduce.dim.Rd 2010-07-30 18:49:45.071990308 +0200
++++ bagphenotype.library/man/reduce.dim.Rd 2010-07-30 18:50:35.081989622 +0200
+@@ -3,7 +3,7 @@
+ \alias{reduce.dim}
+ %- Also NEED an '\alias' for EACH other topic documented here.
+ \title{
+-%% ~~function to do ... ~~
++ ~~function to do ... ~~
+ }
+ \description{
+ %% ~~ A concise (1-5 lines) description of what the function does. ~~
+Index: bagphenotype.library/man/refactor.int.Rd
+===================================================================
+--- bagphenotype.library.orig/man/refactor.int.Rd 2010-07-30 18:49:50.701989343 +0200
++++ bagphenotype.library/man/refactor.int.Rd 2010-07-30 18:50:35.081989622 +0200
+@@ -3,7 +3,7 @@
+ \alias{refactor.int}
+ %- Also NEED an '\alias' for EACH other topic documented here.
+ \title{
+-%% ~~function to do ... ~~
++ ~~function to do ... ~~
+ }
+ \description{
+ %% ~~ A concise (1-5 lines) description of what the function does. ~~
+Index: bagphenotype.library/man/resample.peaks.Rd
+===================================================================
+--- bagphenotype.library.orig/man/resample.peaks.Rd 2010-07-30 18:49:44.611989217 +0200
++++ bagphenotype.library/man/resample.peaks.Rd 2010-07-30 18:50:35.081989622 +0200
+@@ -3,7 +3,7 @@
+ \alias{resample.peaks}
+ %- Also NEED an '\alias' for EACH other topic documented here.
+ \title{
+-%% ~~function to do ... ~~
++ ~~function to do ... ~~
+ }
+ \description{
+ %% ~~ A concise (1-5 lines) description of what the function does. ~~
+Index: bagphenotype.library/man/rma.region.counts.Rd
+===================================================================
+--- bagphenotype.library.orig/man/rma.region.counts.Rd 2010-07-30 18:49:50.021990272 +0200
++++ bagphenotype.library/man/rma.region.counts.Rd 2010-07-30 18:50:35.081989622 +0200
+@@ -3,7 +3,7 @@
+ \alias{rma.region.counts}
+ %- Also NEED an '\alias' for EACH other topic documented here.
+ \title{
+-%% ~~function to do ... ~~
++ ~~function to do ... ~~
+ }
+ \description{
+ %% ~~ A concise (1-5 lines) description of what the function does. ~~
+Index: bagphenotype.library/man/rma.region.prob.ge.Rd
+===================================================================
+--- bagphenotype.library.orig/man/rma.region.prob.ge.Rd 2010-07-30 18:49:45.671990737 +0200
++++ bagphenotype.library/man/rma.region.prob.ge.Rd 2010-07-30 18:50:35.081989622 +0200
+@@ -3,7 +3,7 @@
+ \alias{rma.region.prob.ge}
+ %- Also NEED an '\alias' for EACH other topic documented here.
+ \title{
+-%% ~~function to do ... ~~
++ ~~function to do ... ~~
+ }
+ \description{
+ %% ~~ A concise (1-5 lines) description of what the function does. ~~
+Index: bagphenotype.library/man/sample.within.group.Rd
+===================================================================
+--- bagphenotype.library.orig/man/sample.within.group.Rd 2010-07-30 18:49:48.251988794 +0200
++++ bagphenotype.library/man/sample.within.group.Rd 2010-07-30 18:50:35.081989622 +0200
+@@ -3,7 +3,7 @@
+ \alias{sample.within.group}
+ %- Also NEED an '\alias' for EACH other topic documented here.
+ \title{
+-%% ~~function to do ... ~~
++ ~~function to do ... ~~
+ }
+ \description{
+ %% ~~ A concise (1-5 lines) description of what the function does. ~~
+Index: bagphenotype.library/man/scan.phenotype.Rd
+===================================================================
+--- bagphenotype.library.orig/man/scan.phenotype.Rd 2010-07-30 18:49:49.111988910 +0200
++++ bagphenotype.library/man/scan.phenotype.Rd 2010-07-30 18:50:35.081989622 +0200
+@@ -3,7 +3,7 @@
+ \alias{scan.phenotype}
+ %- Also NEED an '\alias' for EACH other topic documented here.
+ \title{
+-%% ~~function to do ... ~~
++ ~~function to do ... ~~
+ }
+ \description{
+ %% ~~ A concise (1-5 lines) description of what the function does. ~~
+Index: bagphenotype.library/man/set.the.locus.Rd
+===================================================================
+--- bagphenotype.library.orig/man/set.the.locus.Rd 2010-07-30 18:49:41.341989094 +0200
++++ bagphenotype.library/man/set.the.locus.Rd 2010-07-30 18:50:35.081989622 +0200
+@@ -3,7 +3,7 @@
+ \alias{set.the.locus}
+ %- Also NEED an '\alias' for EACH other topic documented here.
+ \title{
+-%% ~~function to do ... ~~
++ ~~function to do ... ~~
+ }
+ \description{
+ %% ~~ A concise (1-5 lines) description of what the function does. ~~
+Index: bagphenotype.library/man/split.formula.Rd
+===================================================================
+--- bagphenotype.library.orig/man/split.formula.Rd 2010-07-30 18:49:44.541989844 +0200
++++ bagphenotype.library/man/split.formula.Rd 2010-07-30 18:50:35.081989622 +0200
+@@ -3,7 +3,7 @@
+ \alias{split.formula}
+ %- Also NEED an '\alias' for EACH other topic documented here.
+ \title{
+-%% ~~function to do ... ~~
++ ~~function to do ... ~~
+ }
+ \description{
+ %% ~~ A concise (1-5 lines) description of what the function does. ~~
+Index: bagphenotype.library/man/split.pathname.Rd
+===================================================================
+--- bagphenotype.library.orig/man/split.pathname.Rd 2010-07-30 18:49:42.541989535 +0200
++++ bagphenotype.library/man/split.pathname.Rd 2010-07-30 18:50:35.081989622 +0200
+@@ -3,7 +3,7 @@
+ \alias{split.pathname}
+ %- Also NEED an '\alias' for EACH other topic documented here.
+ \title{
+-%% ~~function to do ... ~~
++ ~~function to do ... ~~
+ }
+ \description{
+ %% ~~ A concise (1-5 lines) description of what the function does. ~~
+Index: bagphenotype.library/man/string.trim.Rd
+===================================================================
+--- bagphenotype.library.orig/man/string.trim.Rd 2010-07-30 18:49:45.771989774 +0200
++++ bagphenotype.library/man/string.trim.Rd 2010-07-30 18:50:35.081989622 +0200
+@@ -3,7 +3,7 @@
+ \alias{string.trim}
+ %- Also NEED an '\alias' for EACH other topic documented here.
+ \title{
+-%% ~~function to do ... ~~
++ ~~function to do ... ~~
+ }
+ \description{
+ %% ~~ A concise (1-5 lines) description of what the function does. ~~
+Index: bagphenotype.library/man/unify.aic.Rd
+===================================================================
+--- bagphenotype.library.orig/man/unify.aic.Rd 2010-07-30 18:49:43.311989609 +0200
++++ bagphenotype.library/man/unify.aic.Rd 2010-07-30 18:50:35.081989622 +0200
+@@ -3,7 +3,7 @@
+ \alias{unify.aic}
+ %- Also NEED an '\alias' for EACH other topic documented here.
+ \title{
+-%% ~~function to do ... ~~
++ ~~function to do ... ~~
+ }
+ \description{
+ %% ~~ A concise (1-5 lines) description of what the function does. ~~
+Index: bagphenotype.library/man/unify.anova.Rd
+===================================================================
+--- bagphenotype.library.orig/man/unify.anova.Rd 2010-07-30 18:49:41.661989376 +0200
++++ bagphenotype.library/man/unify.anova.Rd 2010-07-30 18:50:35.081989622 +0200
+@@ -3,7 +3,7 @@
+ \alias{unify.anova}
+ %- Also NEED an '\alias' for EACH other topic documented here.
+ \title{
+-%% ~~function to do ... ~~
++ ~~function to do ... ~~
+ }
+ \description{
+ %% ~~ A concise (1-5 lines) description of what the function does. ~~
+Index: bagphenotype.library/man/unify.anova.list.Rd
+===================================================================
+--- bagphenotype.library.orig/man/unify.anova.list.Rd 2010-07-30 18:49:48.551988210 +0200
++++ bagphenotype.library/man/unify.anova.list.Rd 2010-07-30 18:50:35.081989622 +0200
+@@ -3,7 +3,7 @@
+ \alias{unify.anova.list}
+ %- Also NEED an '\alias' for EACH other topic documented here.
+ \title{
+-%% ~~function to do ... ~~
++ ~~function to do ... ~~
+ }
+ \description{
+ %% ~~ A concise (1-5 lines) description of what the function does. ~~
+Index: bagphenotype.library/man/unify.bic.Rd
+===================================================================
+--- bagphenotype.library.orig/man/unify.bic.Rd 2010-07-30 18:49:47.601989482 +0200
++++ bagphenotype.library/man/unify.bic.Rd 2010-07-30 18:50:35.081989622 +0200
+@@ -3,7 +3,7 @@
+ \alias{unify.bic}
+ %- Also NEED an '\alias' for EACH other topic documented here.
+ \title{
+-%% ~~function to do ... ~~
++ ~~function to do ... ~~
+ }
+ \description{
+ %% ~~ A concise (1-5 lines) description of what the function does. ~~
+Index: bagphenotype.library/man/unify.deviance.Rd
+===================================================================
+--- bagphenotype.library.orig/man/unify.deviance.Rd 2010-07-30 18:49:40.291990156 +0200
++++ bagphenotype.library/man/unify.deviance.Rd 2010-07-30 18:50:35.081989622 +0200
+@@ -3,7 +3,7 @@
+ \alias{unify.deviance}
+ %- Also NEED an '\alias' for EACH other topic documented here.
+ \title{
+-%% ~~function to do ... ~~
++ ~~function to do ... ~~
+ }
+ \description{
+ %% ~~ A concise (1-5 lines) description of what the function does. ~~
+Index: bagphenotype.library/man/unify.fit.Rd
+===================================================================
+--- bagphenotype.library.orig/man/unify.fit.Rd 2010-07-30 18:49:47.451988910 +0200
++++ bagphenotype.library/man/unify.fit.Rd 2010-07-30 18:50:35.081989622 +0200
+@@ -3,7 +3,7 @@
+ \alias{unify.fit}
+ %- Also NEED an '\alias' for EACH other topic documented here.
+ \title{
+-%% ~~function to do ... ~~
++ ~~function to do ... ~~
+ }
+ \description{
+ %% ~~ A concise (1-5 lines) description of what the function does. ~~
+Index: bagphenotype.library/man/unify.generic.model.type.Rd
+===================================================================
+--- bagphenotype.library.orig/man/unify.generic.model.type.Rd 2010-07-30 18:49:41.121989484 +0200
++++ bagphenotype.library/man/unify.generic.model.type.Rd 2010-07-30 18:50:35.081989622 +0200
+@@ -3,7 +3,7 @@
+ \alias{unify.generic.model.type}
+ %- Also NEED an '\alias' for EACH other topic documented here.
+ \title{
+-%% ~~function to do ... ~~
++ ~~function to do ... ~~
+ }
+ \description{
+ %% ~~ A concise (1-5 lines) description of what the function does. ~~
+Index: bagphenotype.library/man/unify.has.model.type.Rd
+===================================================================
+--- bagphenotype.library.orig/man/unify.has.model.type.Rd 2010-07-30 18:49:40.351989408 +0200
++++ bagphenotype.library/man/unify.has.model.type.Rd 2010-07-30 18:50:35.081989622 +0200
+@@ -3,7 +3,7 @@
+ \alias{unify.has.model.type}
+ %- Also NEED an '\alias' for EACH other topic documented here.
+ \title{
+-%% ~~function to do ... ~~
++ ~~function to do ... ~~
+ }
+ \description{
+ %% ~~ A concise (1-5 lines) description of what the function does. ~~
+Index: bagphenotype.library/man/unify.is.multilevel.formula.Rd
+===================================================================
+--- bagphenotype.library.orig/man/unify.is.multilevel.formula.Rd 2010-07-30 18:49:42.631990104 +0200
++++ bagphenotype.library/man/unify.is.multilevel.formula.Rd 2010-07-30 18:50:35.081989622 +0200
+@@ -3,7 +3,7 @@
+ \alias{unify.is.multilevel.formula}
+ %- Also NEED an '\alias' for EACH other topic documented here.
+ \title{
+-%% ~~function to do ... ~~
++ ~~function to do ... ~~
+ }
+ \description{
+ %% ~~ A concise (1-5 lines) description of what the function does. ~~
+Index: bagphenotype.library/man/unify.logLik.Rd
+===================================================================
+--- bagphenotype.library.orig/man/unify.logLik.Rd 2010-07-30 18:49:46.631989376 +0200
++++ bagphenotype.library/man/unify.logLik.Rd 2010-07-30 18:50:35.081989622 +0200
+@@ -3,7 +3,7 @@
+ \alias{unify.logLik}
+ %- Also NEED an '\alias' for EACH other topic documented here.
+ \title{
+-%% ~~function to do ... ~~
++ ~~function to do ... ~~
+ }
+ \description{
+ %% ~~ A concise (1-5 lines) description of what the function does. ~~
+Index: bagphenotype.library/man/unify.model.types.Rd
+===================================================================
+--- bagphenotype.library.orig/man/unify.model.types.Rd 2010-07-30 18:49:47.801989630 +0200
++++ bagphenotype.library/man/unify.model.types.Rd 2010-07-30 18:50:35.081989622 +0200
+@@ -3,7 +3,7 @@
+ \alias{unify.model.types}
+ %- Also NEED an '\alias' for EACH other topic documented here.
+ \title{
+-%% ~~function to do ... ~~
++ ~~function to do ... ~~
+ }
+ \description{
+ %% ~~ A concise (1-5 lines) description of what the function does. ~~
+Index: bagphenotype.library/man/unify.num.obs.Rd
+===================================================================
+--- bagphenotype.library.orig/man/unify.num.obs.Rd 2010-07-30 18:49:43.951988738 +0200
++++ bagphenotype.library/man/unify.num.obs.Rd 2010-07-30 18:50:35.081989622 +0200
+@@ -3,7 +3,7 @@
+ \alias{unify.num.obs}
+ %- Also NEED an '\alias' for EACH other topic documented here.
+ \title{
+-%% ~~function to do ... ~~
++ ~~function to do ... ~~
+ }
+ \description{
+ %% ~~ A concise (1-5 lines) description of what the function does. ~~
+Index: bagphenotype.library/man/unify.num.params.Rd
+===================================================================
+--- bagphenotype.library.orig/man/unify.num.params.Rd 2010-07-30 18:49:42.981989617 +0200
++++ bagphenotype.library/man/unify.num.params.Rd 2010-07-30 18:50:35.081989622 +0200
+@@ -3,7 +3,7 @@
+ \alias{unify.num.params}
+ %- Also NEED an '\alias' for EACH other topic documented here.
+ \title{
+-%% ~~function to do ... ~~
++ ~~function to do ... ~~
+ }
+ \description{
+ %% ~~ A concise (1-5 lines) description of what the function does. ~~
+Index: bagphenotype.library/man/unify.simulate.Rd
+===================================================================
+--- bagphenotype.library.orig/man/unify.simulate.Rd 2010-07-30 18:49:45.341989758 +0200
++++ bagphenotype.library/man/unify.simulate.Rd 2010-07-30 18:50:35.081989622 +0200
+@@ -3,7 +3,7 @@
+ \alias{unify.simulate}
+ %- Also NEED an '\alias' for EACH other topic documented here.
+ \title{
+-%% ~~function to do ... ~~
++ ~~function to do ... ~~
+ }
+ \description{
+ %% ~~ A concise (1-5 lines) description of what the function does. ~~
+Index: bagphenotype.library/man/unify.simulate.lmer.Rd
+===================================================================
+--- bagphenotype.library.orig/man/unify.simulate.lmer.Rd 2010-07-30 18:49:47.521989526 +0200
++++ bagphenotype.library/man/unify.simulate.lmer.Rd 2010-07-30 18:50:35.081989622 +0200
+@@ -3,7 +3,7 @@
+ \alias{unify.simulate.lmer}
+ %- Also NEED an '\alias' for EACH other topic documented here.
+ \title{
+-%% ~~function to do ... ~~
++ ~~function to do ... ~~
+ }
+ \description{
+ %% ~~ A concise (1-5 lines) description of what the function does. ~~
+Index: bagphenotype.library/man/write.configfile.Rd
+===================================================================
+--- bagphenotype.library.orig/man/write.configfile.Rd 2010-07-30 18:49:49.701989607 +0200
++++ bagphenotype.library/man/write.configfile.Rd 2010-07-30 18:50:35.081989622 +0200
+@@ -3,7 +3,7 @@
+ \alias{write.configfile}
+ %- Also NEED an '\alias' for EACH other topic documented here.
+ \title{
+-%% ~~function to do ... ~~
++ ~~function to do ... ~~
+ }
+ \description{
+ %% ~~ A concise (1-5 lines) description of what the function does. ~~
+Index: bagphenotype.library/man/write.delim.Rd
+===================================================================
+--- bagphenotype.library.orig/man/write.delim.Rd 2010-07-30 18:49:43.511989784 +0200
++++ bagphenotype.library/man/write.delim.Rd 2010-07-30 18:50:35.081989622 +0200
+@@ -3,7 +3,7 @@
+ \alias{write.delim}
+ %- Also NEED an '\alias' for EACH other topic documented here.
+ \title{
+-%% ~~function to do ... ~~
++ ~~function to do ... ~~
+ }
+ \description{
+ %% ~~ A concise (1-5 lines) description of what the function does. ~~
+Index: bagphenotype.library/man/happy.plot.intervals.Rd
+===================================================================
+--- bagphenotype.library.orig/man/happy.plot.intervals.Rd 2010-07-30 18:50:47.453238003 +0200
++++ bagphenotype.library/man/happy.plot.intervals.Rd 2010-07-30 18:53:31.573238096 +0200
+@@ -3,7 +3,7 @@
+ \alias{happy.plot.intervals}
+ %- Also NEED an '\alias' for EACH other topic documented here.
+ \title{
+-%% ~~function to do ... ~~
++ ~~function to do ... ~~
+ }
+ \description{
+ %% ~~ A concise (1-5 lines) description of what the function does. ~~
Added: trunk/packages/R/r-other-valdar-bagphenotype/trunk/debian/patches/series
===================================================================
--- trunk/packages/R/r-other-valdar-bagphenotype/trunk/debian/patches/series (rev 0)
+++ trunk/packages/R/r-other-valdar-bagphenotype/trunk/debian/patches/series 2010-07-30 17:04:51 UTC (rev 5078)
@@ -0,0 +1,3 @@
+allowing_happy.hbrem.patch
+rd_files_title_non_empty.patch
+no_text_in_between_sections.patch
Added: trunk/packages/R/r-other-valdar-bagphenotype/trunk/debian/rules
===================================================================
--- trunk/packages/R/r-other-valdar-bagphenotype/trunk/debian/rules (rev 0)
+++ trunk/packages/R/r-other-valdar-bagphenotype/trunk/debian/rules 2010-07-30 17:04:51 UTC (rev 5078)
@@ -0,0 +1,9 @@
+#!/usr/bin/make -f
+# -*- makefile -*-
+debRreposname=other-valdar
+#include /usr/share/cdbs/1/rules/patchsys-quilt.mk
+
+#cranName=happy
+#package=r-other-valdar-bagphenotype
+
+include /usr/share/R/debian/r-cran.mk
Property changes on: trunk/packages/R/r-other-valdar-bagphenotype/trunk/debian/rules
___________________________________________________________________
Added: svn:executable
+ *
Added: trunk/packages/R/r-other-valdar-bagphenotype/trunk/debian/source/format
===================================================================
--- trunk/packages/R/r-other-valdar-bagphenotype/trunk/debian/source/format (rev 0)
+++ trunk/packages/R/r-other-valdar-bagphenotype/trunk/debian/source/format 2010-07-30 17:04:51 UTC (rev 5078)
@@ -0,0 +1 @@
+3.0 (quilt)
Added: trunk/packages/R/r-other-valdar-bagphenotype/trunk/debian/watch
===================================================================
--- trunk/packages/R/r-other-valdar-bagphenotype/trunk/debian/watch (rev 0)
+++ trunk/packages/R/r-other-valdar-bagphenotype/trunk/debian/watch 2010-07-30 17:04:51 UTC (rev 5078)
@@ -0,0 +1,2 @@
+version=3
+http://www.unc.edu/%7Ewvaldar/software/Rbagphenotype/distrib/bagphenotype.library_([0-9.]+)\.tar\.gz
More information about the debian-med-commit
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