[med-svn] r4870 - in trunk/packages/R/r-cran-qtl/trunk/debian: . source
Andreas Tille
tille at alioth.debian.org
Fri Jun 4 21:55:54 UTC 2010
Author: tille
Date: 2010-06-04 21:55:53 +0000 (Fri, 04 Jun 2010)
New Revision: 4870
Removed:
trunk/packages/R/r-cran-qtl/trunk/debian/upstream-metadata.yaml
Modified:
trunk/packages/R/r-cran-qtl/trunk/debian/README.Debian
trunk/packages/R/r-cran-qtl/trunk/debian/changelog
trunk/packages/R/r-cran-qtl/trunk/debian/control
trunk/packages/R/r-cran-qtl/trunk/debian/rules
trunk/packages/R/r-cran-qtl/trunk/debian/source/format
Log:
Commiting the version which was uploaded by Steffen M?\195?\182ller
Modified: trunk/packages/R/r-cran-qtl/trunk/debian/README.Debian
===================================================================
--- trunk/packages/R/r-cran-qtl/trunk/debian/README.Debian 2010-06-04 21:53:11 UTC (rev 4869)
+++ trunk/packages/R/r-cran-qtl/trunk/debian/README.Debian 2010-06-04 21:55:53 UTC (rev 4870)
@@ -1,16 +1,23 @@
-README.Debian for r-cran-qtl:
-=============================
+The debian package name was changed fom qtl on the CRAN archives to
+r-cran-qtl. This best reflects the origin of the package obvious. The
+qtl source are referred to as r/qtl on the upstream web pages
+(http://www.biostat.jhsph.edu/~kbroman/qtl/).
+Dirk Eddelbuettel <edd at debian.org> kindly sponsored the initial release
+and performed many smaller changes to streamline the debianisation. I
+very much thank him for this.
+
+The chromosomal linkage analyses for a longer time seemed neglected in
+the bioinformatics community. If the distribution of this package in
+Debian had some positive side effect in improving the communication
+between researchers in bioinformatics and genetics, then we have
+achieved something real good.
+
When using the package, please cite
Broman KW, Wu H, Sen S, Churchill GA (2003)
R/qtl: QTL mapping in experimental crosses.
Bioinformatics 19:889-890
in your publications.
-Notes on how this package can be tested.
-────────────────────────────────────────
-This package can be tested by loading it into R with the command
-‘library(qtl)’ in order to confirm its integrity.
-
-- Steffen Moeller <steffen_moeller at gmx.de> Wed, 10 Oct 2007 13:43:39 +0200
Modified: trunk/packages/R/r-cran-qtl/trunk/debian/changelog
===================================================================
--- trunk/packages/R/r-cran-qtl/trunk/debian/changelog 2010-06-04 21:53:11 UTC (rev 4869)
+++ trunk/packages/R/r-cran-qtl/trunk/debian/changelog 2010-06-04 21:55:53 UTC (rev 4870)
@@ -1,22 +1,12 @@
-qtl (1.16-6-2) UNRELEASED; urgency=low
-
- * Fixed spelling of Debian Med (removed dash)
-
- -- Andreas Tille <tille at debian.org> Fri, 04 Jun 2010 14:12:49 +0200
-
qtl (1.16-6-1) unstable; urgency=low
* New upstream version
- * Added myself to Uploaders
- * Standards-Version: 3.8.4 (no changes needed)
- * Debhelper 7
- * Moved from pkg-bioc to debian-med SVN repository
- * Updated README.Debian
- * Added upstream-metadata.yaml
- * debian/{control,rules}: Depends: ${R:Depends}
- * Source format 3.0 (quilt)
+ - Integration of MQM mapping of mapqtl
+ - Many smallish or larger improvements
+ * Updated standards-version
+ - Added debian/source/format indication
- -- Andreas Tille <tille at debian.org> Fri, 04 Jun 2010 13:50:18 +0200
+ -- Steffen Moeller <moeller at debian.org> Fri, 04 Jun 2010 13:05:47 +0200
qtl (1.14-2-1) unstable; urgency=low
Modified: trunk/packages/R/r-cran-qtl/trunk/debian/control
===================================================================
--- trunk/packages/R/r-cran-qtl/trunk/debian/control 2010-06-04 21:53:11 UTC (rev 4869)
+++ trunk/packages/R/r-cran-qtl/trunk/debian/control 2010-06-04 21:55:53 UTC (rev 4870)
@@ -1,18 +1,17 @@
Source: qtl
Section: gnu-r
Priority: optional
-Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-Uploaders: Steffen Moeller <moeller at debian.org>,
- Andreas Tille <tille at debian.org>
-Build-Depends: debhelper (>= 7), cdbs, r-base-dev (>= 2.10.0~20091019)
+Maintainer: Debian-Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+Uploaders: Steffen Moeller <moeller at debian.org>
+Build-Depends: debhelper (>= 5.0.0), cdbs, r-base-dev (>= 2.10.0~20091019)
Standards-Version: 3.8.4
-Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/R/r-cran-qtl/trunk/?rev=0&sc=0
-Vcs-Svn: svn://svn.debian.org/svn/debian-med/trunk/packages/R/r-cran-qtl/trunk/
+Vcs-Browser: http://svn.debian.org/wsvn/pkg-bioc/trunk/packages/qtl/trunk/?rev=0&sc=0
+Vcs-Svn: svn://svn.debian.org/svn/pkg-bioc/trunk/packages/qtl/trunk/
Homepage: http://www.rqtl.org
Package: r-cran-qtl
Architecture: any
-Depends: ${shlibs:Depends}, ${R:Depends}
+Depends: ${shlibs:Depends}, r-base-core (>= 2.10.0~20091019)
Description: GNU R package for genetic marker linkage analysis
R/qtl is an extensible, interactive environment for mapping quantitative
trait loci (QTLs) in experimental crosses. It is implemented as an
Modified: trunk/packages/R/r-cran-qtl/trunk/debian/rules
===================================================================
--- trunk/packages/R/r-cran-qtl/trunk/debian/rules 2010-06-04 21:53:11 UTC (rev 4869)
+++ trunk/packages/R/r-cran-qtl/trunk/debian/rules 2010-06-04 21:55:53 UTC (rev 4870)
@@ -4,7 +4,3 @@
# Copyright 2003-2006 by Dirk Eddelbuettel <edd at debian.org>
include /usr/share/R/debian/r-cran.mk
-
-install/$(package)::
- # Require a number equal or superior than the R version the package was built with.
- echo "R:Depends=r-base-core (>= $(shell R --version | head -n1 | perl -ne 'print / +([0-9]\.[0-9]+\.[0-9])/')~)" >> debian/$(package).substvars
Modified: trunk/packages/R/r-cran-qtl/trunk/debian/source/format
===================================================================
--- trunk/packages/R/r-cran-qtl/trunk/debian/source/format 2010-06-04 21:53:11 UTC (rev 4869)
+++ trunk/packages/R/r-cran-qtl/trunk/debian/source/format 2010-06-04 21:55:53 UTC (rev 4870)
@@ -1 +1 @@
-3.0 (quilt)
+1.0
Deleted: trunk/packages/R/r-cran-qtl/trunk/debian/upstream-metadata.yaml
===================================================================
--- trunk/packages/R/r-cran-qtl/trunk/debian/upstream-metadata.yaml 2010-06-04 21:53:11 UTC (rev 4869)
+++ trunk/packages/R/r-cran-qtl/trunk/debian/upstream-metadata.yaml 2010-06-04 21:55:53 UTC (rev 4870)
@@ -1,9 +0,0 @@
-Homepage: http://www.rqtl.org
-Name: R/qtl: A QTL mapping environment
-Reference:
- Author: K. W. Broman, H. Wu, S. Sen, G. A. Churchill
- Title: R/qtl: QTL mapping in experimental crosses.
- Journal: Bioinformatics
- Number: 19
- Pages: 889-890
- Year: 2003
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