[med-svn] r4872 - in trunk/packages/R/r-cran-qtl/trunk/debian: . source

Fri Jun 4 22:41:05 UTC 2010

Author: tille
Date: 2010-06-04 22:41:04 +0000 (Fri, 04 Jun 2010)
New Revision: 4872

Added:
   trunk/packages/R/r-cran-qtl/trunk/debian/upstream-metadata.yaml
Modified:
   trunk/packages/R/r-cran-qtl/trunk/debian/README.Debian
   trunk/packages/R/r-cran-qtl/trunk/debian/changelog
   trunk/packages/R/r-cran-qtl/trunk/debian/control
   trunk/packages/R/r-cran-qtl/trunk/debian/rules
   trunk/packages/R/r-cran-qtl/trunk/debian/source/format
Log:
Propagate changes from my first upload today which was left in race condition


Modified: trunk/packages/R/r-cran-qtl/trunk/debian/README.Debian
===================================================================

--- trunk/packages/R/r-cran-qtl/trunk/debian/README.Debian	2010-06-04 21:57:07 UTC (rev 4871)
+++ trunk/packages/R/r-cran-qtl/trunk/debian/README.Debian	2010-06-04 22:41:04 UTC (rev 4872)
@@ -1,23 +1,16 @@
-The debian package name was changed fom qtl on the CRAN archives to
-r-cran-qtl.  This best reflects the origin of the package obvious. The
-qtl source are referred to as r/qtl on the upstream web pages
-(http://www.biostat.jhsph.edu/~kbroman/qtl/).
+README.Debian for r-cran-qtl:
+=============================
 
-Dirk Eddelbuettel <edd at debian.org> kindly sponsored the initial release
-and performed many smaller changes to streamline the debianisation. I
-very much thank him for this.
-
-The chromosomal linkage analyses for a longer time seemed neglected in
-the bioinformatics community. If the distribution of this package in
-Debian had some positive side effect in improving the communication
-between researchers in bioinformatics and genetics, then we have
-achieved something real good.
-
 When using the package, please cite
 	Broman KW, Wu H, Sen S, Churchill GA (2003)
 	R/qtl: QTL mapping in experimental crosses.
 	Bioinformatics  19:889-890 
 in your publications.
 
+Notes on how this package can be tested.
+────────────────────────────────────────
 
+This package can be tested by loading it into R with the command
+‘library(qtl)’ in order to confirm its integrity.
+
 -- Steffen Moeller <steffen_moeller at gmx.de>  Wed, 10 Oct 2007 13:43:39 +0200

Modified: trunk/packages/R/r-cran-qtl/trunk/debian/changelog
===================================================================
--- trunk/packages/R/r-cran-qtl/trunk/debian/changelog	2010-06-04 21:57:07 UTC (rev 4871)
+++ trunk/packages/R/r-cran-qtl/trunk/debian/changelog	2010-06-04 22:41:04 UTC (rev 4872)
@@ -1,3 +1,16 @@
+qtl (1.16-6-2) unstable; urgency=low
+
+  * Added myself to Uploaders
+  * Debhelper 7
+  * Moved from pkg-bioc to debian-med SVN repository
+  * Updated README.Debian
+  * Added upstream-metadata.yaml
+  * debian/{control,rules}: Depends: ${R:Depends}
+  * Source format 3.0 (quilt)
+  * Fixed spelling of Debian Med (removed dash)
+
+ -- Andreas Tille <tille at debian.org>  Fri, 04 Jun 2010 14:12:49 +0200
+
 qtl (1.16-6-1) unstable; urgency=low
 
   * New upstream version

Modified: trunk/packages/R/r-cran-qtl/trunk/debian/control
===================================================================
--- trunk/packages/R/r-cran-qtl/trunk/debian/control	2010-06-04 21:57:07 UTC (rev 4871)
+++ trunk/packages/R/r-cran-qtl/trunk/debian/control	2010-06-04 22:41:04 UTC (rev 4872)
@@ -1,17 +1,18 @@
 Source: qtl
 Section: gnu-r
 Priority: optional
-Maintainer: Debian-Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-Uploaders: Steffen Moeller <moeller at debian.org>
-Build-Depends: debhelper (>= 5.0.0), cdbs, r-base-dev (>= 2.10.0~20091019)
+Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+Uploaders: Steffen Moeller <moeller at debian.org>,
+           Andreas Tille <tille at debian.org>
+Build-Depends: debhelper (>= 7), cdbs, r-base-dev (>= 2.10.0~20091019)
 Standards-Version: 3.8.4
-Vcs-Browser: http://svn.debian.org/wsvn/pkg-bioc/trunk/packages/qtl/trunk/?rev=0&sc=0
-Vcs-Svn: svn://svn.debian.org/svn/pkg-bioc/trunk/packages/qtl/trunk/
+Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/R/r-cran-qtl/trunk/?rev=0&sc=0
+Vcs-Svn: svn://svn.debian.org/svn/debian-med/trunk/packages/R/r-cran-qtl/trunk/
 Homepage: http://www.rqtl.org
 
 Package: r-cran-qtl
 Architecture: any
-Depends: ${shlibs:Depends}, r-base-core (>= 2.10.0~20091019)
+Depends: ${shlibs:Depends}, ${R:Depends}
 Description: GNU R package for genetic marker linkage analysis
  R/qtl is an extensible, interactive environment for mapping quantitative
  trait loci (QTLs) in experimental crosses. It is implemented as an

Modified: trunk/packages/R/r-cran-qtl/trunk/debian/rules
===================================================================
--- trunk/packages/R/r-cran-qtl/trunk/debian/rules	2010-06-04 21:57:07 UTC (rev 4871)
+++ trunk/packages/R/r-cran-qtl/trunk/debian/rules	2010-06-04 22:41:04 UTC (rev 4872)
@@ -4,3 +4,7 @@
 # Copyright 2003-2006 by Dirk Eddelbuettel <edd at debian.org>
 
 include /usr/share/R/debian/r-cran.mk
+
+install/$(package)::
+	# Require a number equal or superior than the R version the package was built with.
+	echo "R:Depends=r-base-core (>= $(shell R --version | head -n1 | perl -ne 'print / +([0-9]\.[0-9]+\.[0-9])/')~)" >> debian/$(package).substvars

Modified: trunk/packages/R/r-cran-qtl/trunk/debian/source/format
===================================================================
--- trunk/packages/R/r-cran-qtl/trunk/debian/source/format	2010-06-04 21:57:07 UTC (rev 4871)
+++ trunk/packages/R/r-cran-qtl/trunk/debian/source/format	2010-06-04 22:41:04 UTC (rev 4872)
@@ -1 +1 @@
-1.0
+3.0 (quilt)

Added: trunk/packages/R/r-cran-qtl/trunk/debian/upstream-metadata.yaml
===================================================================
--- trunk/packages/R/r-cran-qtl/trunk/debian/upstream-metadata.yaml	                        (rev 0)
+++ trunk/packages/R/r-cran-qtl/trunk/debian/upstream-metadata.yaml	2010-06-04 22:41:04 UTC (rev 4872)
@@ -0,0 +1,9 @@
+Homepage: http://www.rqtl.org
+Name: R/qtl: A QTL mapping environment
+Reference:
+ Author: K. W. Broman, H. Wu, S. Sen, G. A. Churchill
+ Title: R/qtl: QTL mapping in experimental crosses.
+ Journal: Bioinformatics
+ Number: 19
+ Pages: 889-890
+ Year: 2003


