[med-svn] r4910 - in trunk/packages/velvet/trunk/debian: . patches source

[Andreas Tille]

Author: tille
Date: 2010-06-24 14:18:52 +0000 (Thu, 24 Jun 2010)
New Revision: 4910

Added:
   trunk/packages/velvet/trunk/debian/source/
   trunk/packages/velvet/trunk/debian/source/format
Modified:
   trunk/packages/velvet/trunk/debian/changelog
   trunk/packages/velvet/trunk/debian/control
   trunk/packages/velvet/trunk/debian/patches/include_debians_zlib.patch
   trunk/packages/velvet/trunk/debian/rules
Log:
New upstream version, source format 3.0 (quilt), switched from simple-patchsys to quilt


Modified: trunk/packages/velvet/trunk/debian/changelog
===================================================================
--- trunk/packages/velvet/trunk/debian/changelog	2010-06-24 13:30:55 UTC (rev 4909)
+++ trunk/packages/velvet/trunk/debian/changelog	2010-06-24 14:18:52 UTC (rev 4910)
@@ -1,3 +1,20 @@
+velvet (1.0.02~nozlibcopy-1) unstable; urgency=low
+
+  * New upstream version
+  * Source format 3.0 (quilt)
+  * debian/control:
+    - Recommends: python (some new scripts in /usr/share/velvet/contrib
+      are Python scripts)
+    - Build-Depends: quilt
+  * debian/rules:
+    include /usr/share/cdbs/1/rules/patchsys-quilt.mk
+    (instead of simple-patchsys)
+  * debian/patches: Switch to quilt
+  * debian/patches/shuffleSequences_fasta.patch:
+    Add interpreter to Python script
+
+ -- Andreas Tille <tille at debian.org>  Thu, 24 Jun 2010 15:41:53 +0200
+
 velvet (0.7.61~nozlibcopy-1) unstable; urgency=low
 
   * New upstream version

Modified: trunk/packages/velvet/trunk/debian/control
===================================================================
--- trunk/packages/velvet/trunk/debian/control	2010-06-24 13:30:55 UTC (rev 4909)
+++ trunk/packages/velvet/trunk/debian/control	2010-06-24 14:18:52 UTC (rev 4910)
@@ -5,7 +5,7 @@
 DM-Upload-Allowed: yes
 Uploaders: Charles Plessy <plessy at debian.org>,
  Andreas Tille <tille at debian.org>
-Build-Depends: cdbs, debhelper (>= 7.1), zlib1g-dev, help2man
+Build-Depends: cdbs, debhelper (>= 7.1), zlib1g-dev, help2man, quilt
 Standards-Version: 3.8.4
 Homepage: http://www.ebi.ac.uk/~zerbino/velvet/
 Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/velvet/trunk/?rev=0&sc=0
@@ -15,6 +15,7 @@
 Architecture: any
 Multi-Arch: foreign
 Depends: ${shlibs:Depends}, ${misc:Depends}
+Recommends: python
 Suggests: velvet-example
 Description: Nucleic acid sequence assembler for very short reads
  Velvet is a de novo genomic assembler specially designed for short read

Modified: trunk/packages/velvet/trunk/debian/patches/include_debians_zlib.patch
===================================================================
--- trunk/packages/velvet/trunk/debian/patches/include_debians_zlib.patch	2010-06-24 13:30:55 UTC (rev 4909)
+++ trunk/packages/velvet/trunk/debian/patches/include_debians_zlib.patch	2010-06-24 14:18:52 UTC (rev 4910)
@@ -1,8 +1,8 @@
 Description: Use the zlib distributed by Debian, not the one in third-party/zlib-1.2.3/.
 Author: Charles Plessy <plessy at debian.org>
 Forwarded: no
---- src/readSet.c.orig	2010-01-25 13:27:24.000000000 +0900
-+++ src/readSet.c	2010-01-25 13:28:00.000000000 +0900
+--- velvet_1.0.02~nozlibcopy.orig/src/readSet.c
++++ velvet_1.0.02~nozlibcopy/src/readSet.c
 @@ -32,7 +32,7 @@
  #if defined(_WIN32) || defined(__WIN32__) || defined(WIN32)
  #include "../third-party/zlib-1.2.3/Win32/include/zlib.h"

Modified: trunk/packages/velvet/trunk/debian/rules
===================================================================
--- trunk/packages/velvet/trunk/debian/rules	2010-06-24 13:30:55 UTC (rev 4909)
+++ trunk/packages/velvet/trunk/debian/rules	2010-06-24 14:18:52 UTC (rev 4910)
@@ -7,7 +7,7 @@
 
 include /usr/share/cdbs/1/rules/debhelper.mk
 include /usr/share/cdbs/1/class/makefile.mk
-include /usr/share/cdbs/1/rules/simple-patchsys.mk
+include /usr/share/cdbs/1/rules/patchsys-quilt.mk
 
 clean::
 	$(RM) zlib

Added: trunk/packages/velvet/trunk/debian/source/format
===================================================================
--- trunk/packages/velvet/trunk/debian/source/format	                        (rev 0)
+++ trunk/packages/velvet/trunk/debian/source/format	2010-06-24 14:18:52 UTC (rev 4910)
@@ -0,0 +1 @@
+3.0 (quilt)