[med-svn] r4941 - in trunk/packages/embassy-domalign/trunk/debian: . manpages
Charles Plessy
plessy at alioth.debian.org
Sat Jun 26 09:55:13 UTC 2010
Author: plessy
Date: 2010-06-26 09:55:12 +0000 (Sat, 26 Jun 2010)
New Revision: 4941
Modified:
trunk/packages/embassy-domalign/trunk/debian/changelog
trunk/packages/embassy-domalign/trunk/debian/control
trunk/packages/embassy-domalign/trunk/debian/embassy-domalign.manpages
trunk/packages/embassy-domalign/trunk/debian/manpages/allversusall.1e
trunk/packages/embassy-domalign/trunk/debian/manpages/domainalign.1e
trunk/packages/embassy-domalign/trunk/debian/manpages/domainrep.1e
trunk/packages/embassy-domalign/trunk/debian/manpages/seqalign.1e
Log:
New upstream release (last January).
Modified: trunk/packages/embassy-domalign/trunk/debian/changelog
===================================================================
--- trunk/packages/embassy-domalign/trunk/debian/changelog 2010-06-26 08:52:38 UTC (rev 4940)
+++ trunk/packages/embassy-domalign/trunk/debian/changelog 2010-06-26 09:55:12 UTC (rev 4941)
@@ -1,3 +1,12 @@
+embassy-domalign (0.1.0+20100115-1) unstable; urgency=low
+
+ * New upstream release in which the version number was unchanged.
+ * debian/control:
+ - Build against EMBOSS 6.2 (Closes: #587113).
+ - Checked conformance with Policy 3.8.4 (no changes needed).
+ * debian/*manpages* refreshed.
+ -- Charles Plessy <plessy at debian.org> Sat, 26 Jun 2010 18:51:56 +0900
+
embassy-domalign (0.1.0+20090715-1) unstable; urgency=low
* New upstream release in which the version number was unchanged.
@@ -4,7 +13,7 @@
* debian/control:
- Build against EMBOSS 6.1
- Checked conformance with Policy 3.8.2 (no changes needed).
- * debian/watch: mangle Debian version to ignore the timestamp.
+ * debian/watch: mangle Debian version to ignore the timestamp.
* Refreshed and experimeted on debian/copyright.
* debian/*manpages* refreshed and moved to section 1e.
Modified: trunk/packages/embassy-domalign/trunk/debian/control
===================================================================
--- trunk/packages/embassy-domalign/trunk/debian/control 2010-06-26 08:52:38 UTC (rev 4940)
+++ trunk/packages/embassy-domalign/trunk/debian/control 2010-06-26 09:55:12 UTC (rev 4941)
@@ -1,13 +1,13 @@
Source: embassy-domalign
Section: science
Priority: optional
-Build-Depends: cdbs, debhelper (>= 7), libajax6-dev (>= 6.1), libnucleus6-dev (>= 6.1), emboss-lib (>= 6.1), libx11-dev, libgd2-xpm-dev
+Build-Depends: cdbs, debhelper (>= 7), libajax6-dev (>= 6.2), libnucleus6-dev (>= 6.2), emboss-lib (>= 6.2), libx11-dev, libgd2-xpm-dev
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
DM-Upload-Allowed: yes
Uploaders: Charles Plessy <plessy at debian.org>
Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/embassy-domalign/trunk/?rev=0&sc=0
Vcs-Svn: svn://svn.debian.org/svn/debian-med/trunk/packages/embassy-domalign/trunk/
-Standards-Version: 3.8.2
+Standards-Version: 3.8.4
Homepage: http://emboss.sourceforge.net/apps/cvs/embassy/index.html#DOMALIGN
Package: embassy-domalign
Modified: trunk/packages/embassy-domalign/trunk/debian/embassy-domalign.manpages
===================================================================
--- trunk/packages/embassy-domalign/trunk/debian/embassy-domalign.manpages 2010-06-26 08:52:38 UTC (rev 4940)
+++ trunk/packages/embassy-domalign/trunk/debian/embassy-domalign.manpages 2010-06-26 09:55:12 UTC (rev 4941)
@@ -1,4 +1,4 @@
debian/manpages/allversusall.1e
-debian/manpages/domainrep.1e
debian/manpages/domainalign.1e
debian/manpages/seqalign.1e
+debian/manpages/domainrep.1e
Modified: trunk/packages/embassy-domalign/trunk/debian/manpages/allversusall.1e
===================================================================
--- trunk/packages/embassy-domalign/trunk/debian/manpages/allversusall.1e 2010-06-26 08:52:38 UTC (rev 4940)
+++ trunk/packages/embassy-domalign/trunk/debian/manpages/allversusall.1e 2010-06-26 09:55:12 UTC (rev 4941)
@@ -1,14 +1,23 @@
'\" t
.\" Title: ALLVERSUSALL
-.\" Author: Debian-Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-.\" Generator: DocBook XSL Stylesheets v1.75.1 <http://docbook.sf.net/>
-.\" Date: 07/17/2009
+.\" Author: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+.\" Generator: DocBook XSL Stylesheets v1.75.2 <http://docbook.sf.net/>
+.\" Date: 06/26/2010
.\" Manual: EMBOSS Manual for Debian
-.\" Source: EMBOSS 0.1.0+20090715
+.\" Source: EMBOSS 0.1.0+20100115
.\" Language: English
.\"
-.TH "ALLVERSUSALL" "1e" "07/17/2009" "EMBOSS 0.1.0+20090715" "EMBOSS Manual for Debian"
+.TH "ALLVERSUSALL" "1e" "06/26/2010" "EMBOSS 0.1.0+20100115" "EMBOSS Manual for Debian"
.\" -----------------------------------------------------------------
+.\" * Define some portability stuff
+.\" -----------------------------------------------------------------
+.\" ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+.\" http://bugs.debian.org/507673
+.\" http://lists.gnu.org/archive/html/groff/2009-02/msg00013.html
+.\" ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+.ie \n(.g .ds Aq \(aq
+.el .ds Aq '
+.\" -----------------------------------------------------------------
.\" * set default formatting
.\" -----------------------------------------------------------------
.\" disable hyphenation
@@ -74,7 +83,7 @@
system\&.
.SH "AUTHOR"
.PP
-\fBDebian\-Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
+\fBDebian Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
.RS 4
Wrote the script used to autogenerate this manual page\&.
.RE
Modified: trunk/packages/embassy-domalign/trunk/debian/manpages/domainalign.1e
===================================================================
--- trunk/packages/embassy-domalign/trunk/debian/manpages/domainalign.1e 2010-06-26 08:52:38 UTC (rev 4940)
+++ trunk/packages/embassy-domalign/trunk/debian/manpages/domainalign.1e 2010-06-26 09:55:12 UTC (rev 4941)
@@ -1,14 +1,23 @@
'\" t
.\" Title: DOMAINALIGN
-.\" Author: Debian-Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-.\" Generator: DocBook XSL Stylesheets v1.75.1 <http://docbook.sf.net/>
-.\" Date: 07/17/2009
+.\" Author: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+.\" Generator: DocBook XSL Stylesheets v1.75.2 <http://docbook.sf.net/>
+.\" Date: 06/26/2010
.\" Manual: EMBOSS Manual for Debian
-.\" Source: EMBOSS 0.1.0+20090715
+.\" Source: EMBOSS 0.1.0+20100115
.\" Language: English
.\"
-.TH "DOMAINALIGN" "1e" "07/17/2009" "EMBOSS 0.1.0+20090715" "EMBOSS Manual for Debian"
+.TH "DOMAINALIGN" "1e" "06/26/2010" "EMBOSS 0.1.0+20100115" "EMBOSS Manual for Debian"
.\" -----------------------------------------------------------------
+.\" * Define some portability stuff
+.\" -----------------------------------------------------------------
+.\" ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+.\" http://bugs.debian.org/507673
+.\" http://lists.gnu.org/archive/html/groff/2009-02/msg00013.html
+.\" ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+.ie \n(.g .ds Aq \(aq
+.el .ds Aq '
+.\" -----------------------------------------------------------------
.\" * set default formatting
.\" -----------------------------------------------------------------
.\" disable hyphenation
@@ -34,18 +43,18 @@
.PP
\fB\-dcfinfile\fR \fIinfile\fR
.RS 4
-This option specifies the name of DCF file (domain classification file) (input)\&. A \'domain classification file\' contains classification and other data for domains from SCOP or CATH, in DCF format (EMBL\-like)\&. The files are generated by using SCOPPARSE and CATHPARSE\&. Domain sequence information can be added to the file by using DOMAINSEQS\&.
+This option specifies the name of DCF file (domain classification file) (input)\&. A \*(Aqdomain classification file\*(Aq contains classification and other data for domains from SCOP or CATH, in DCF format (EMBL\-like)\&. The files are generated by using SCOPPARSE and CATHPARSE\&. Domain sequence information can be added to the file by using DOMAINSEQS\&.
.RE
.PP
\fB\-pdbdir\fR \fIdirectory\fR
.RS 4
-This option specifies the location of domain PDB files (input)\&. A \'domain PDB file\' contains coordinate data for a single domain from SCOP or CATH, in PDB format\&. The files are generated by using DOMAINER\&. Default value: \&./
+This option specifies the location of domain PDB files (input)\&. A \*(Aqdomain PDB file\*(Aq contains coordinate data for a single domain from SCOP or CATH, in PDB format\&. The files are generated by using DOMAINER\&. Default value: \&./
.RE
.SS "Required section"
.PP
\fB\-node\fR \fIlist\fR
.RS 4
-This option specifies the node for redundancy removal\&. Redundancy can be removed at any specified node in the SCOP or CATH hierarchies\&. For example by selecting \'Class\' entries belonging to the same Class will be non\-redundant\&. Default value: 1
+This option specifies the node for redundancy removal\&. Redundancy can be removed at any specified node in the SCOP or CATH hierarchies\&. For example by selecting \*(AqClass\*(Aq entries belonging to the same Class will be non\-redundant\&. Default value: 1
.RE
.PP
\fB\-mode\fR \fIlist\fR
@@ -61,12 +70,12 @@
.PP
\fB\-dafoutdir\fR \fIoutdir\fR
.RS 4
-This option specifies the location of DAF files (domain alignment files) (output)\&. A \'domain alignment file\' contains a sequence alignment of domains belonging to the same SCOP or CATH family\&. The files are in clustal format and are annotated with domain family classification information\&. The files generated by using SCOPALIGN will contain a structure\-based sequence alignment of domains of known structure only\&. Such alignments can be extended with sequence relatives (of unknown structure) by using SEQALIGN\&. Default value: \&./
+This option specifies the location of DAF files (domain alignment files) (output)\&. A \*(Aqdomain alignment file\*(Aq contains a sequence alignment of domains belonging to the same SCOP or CATH family\&. The files are in clustal format and are annotated with domain family classification information\&. The files generated by using SCOPALIGN will contain a structure\-based sequence alignment of domains of known structure only\&. Such alignments can be extended with sequence relatives (of unknown structure) by using SEQALIGN\&. Default value: \&./
.RE
.PP
\fB\-singletsoutdir\fR \fIoutdir\fR
.RS 4
-This option specifies the location of DHF files (domain hits files) for singlet sequences (output)\&. The singlets are written out as a \'domain hits file\' \- which contains database hits (sequences) with domain classification information, in FASTA format\&. Default value: \&./
+This option specifies the location of DHF files (domain hits files) for singlet sequences (output)\&. The singlets are written out as a \*(Aqdomain hits file\*(Aq \- which contains database hits (sequences) with domain classification information, in FASTA format\&. Default value: \&./
.RE
.PP
\fB\-superoutdir\fR \fIoutdir\fR
@@ -88,7 +97,7 @@
system\&.
.SH "AUTHOR"
.PP
-\fBDebian\-Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
+\fBDebian Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
.RS 4
Wrote the script used to autogenerate this manual page\&.
.RE
Modified: trunk/packages/embassy-domalign/trunk/debian/manpages/domainrep.1e
===================================================================
--- trunk/packages/embassy-domalign/trunk/debian/manpages/domainrep.1e 2010-06-26 08:52:38 UTC (rev 4940)
+++ trunk/packages/embassy-domalign/trunk/debian/manpages/domainrep.1e 2010-06-26 09:55:12 UTC (rev 4941)
@@ -1,14 +1,23 @@
'\" t
.\" Title: DOMAINREP
-.\" Author: Debian-Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-.\" Generator: DocBook XSL Stylesheets v1.75.1 <http://docbook.sf.net/>
-.\" Date: 07/17/2009
+.\" Author: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+.\" Generator: DocBook XSL Stylesheets v1.75.2 <http://docbook.sf.net/>
+.\" Date: 06/26/2010
.\" Manual: EMBOSS Manual for Debian
-.\" Source: EMBOSS 0.1.0+20090715
+.\" Source: EMBOSS 0.1.0+20100115
.\" Language: English
.\"
-.TH "DOMAINREP" "1e" "07/17/2009" "EMBOSS 0.1.0+20090715" "EMBOSS Manual for Debian"
+.TH "DOMAINREP" "1e" "06/26/2010" "EMBOSS 0.1.0+20100115" "EMBOSS Manual for Debian"
.\" -----------------------------------------------------------------
+.\" * Define some portability stuff
+.\" -----------------------------------------------------------------
+.\" ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+.\" http://bugs.debian.org/507673
+.\" http://lists.gnu.org/archive/html/groff/2009-02/msg00013.html
+.\" ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+.ie \n(.g .ds Aq \(aq
+.el .ds Aq '
+.\" -----------------------------------------------------------------
.\" * set default formatting
.\" -----------------------------------------------------------------
.\" disable hyphenation
@@ -34,19 +43,19 @@
.PP
\fB\-dcfinfile\fR \fIinfile\fR
.RS 4
-This option specifies the name of DCF file (domain classification file) (input)\&. A \'domain classification file\' contains classification and other data for domains from SCOP or CATH, in DCF format (EMBL\-like)\&. The files are generated by using SCOPPARSE and CATHPARSE\&. Domain sequence information can be added to the file by using DOMAINSEQS\&.
+This option specifies the name of DCF file (domain classification file) (input)\&. A \*(Aqdomain classification file\*(Aq contains classification and other data for domains from SCOP or CATH, in DCF format (EMBL\-like)\&. The files are generated by using SCOPPARSE and CATHPARSE\&. Domain sequence information can be added to the file by using DOMAINSEQS\&.
.RE
.SS "Required section"
.PP
\fB\-node\fR \fIlist\fR
.RS 4
-This option specifies the node fore reordering the file\&. Reordering can be done for any specified node in the SCOP or CATH hierarchies\&. For example by selecting \'Class\' entries belonging to the same Class will be reordered in turn\&. Default value: 1
+This option specifies the node fore reordering the file\&. Reordering can be done for any specified node in the SCOP or CATH hierarchies\&. For example by selecting \*(AqClass\*(Aq entries belonging to the same Class will be reordered in turn\&. Default value: 1
.RE
.SS "Output section"
.PP
\fB\-dcfoutfile\fR \fIoutfile\fR
.RS 4
-This option specifies the name of DCF file (domain classification file) (output)\&. A \'domain classification file\' contains classification and other data for domains from SCOP or CATH, in DCF format (EMBL\-like)\&. The files are generated by using SCOPPARSE and CATHPARSE\&. Domain sequence information can be added to the file by using DOMAINSEQS\&. Default value: test\&.scop
+This option specifies the name of DCF file (domain classification file) (output)\&. A \*(Aqdomain classification file\*(Aq contains classification and other data for domains from SCOP or CATH, in DCF format (EMBL\-like)\&. The files are generated by using SCOPPARSE and CATHPARSE\&. Domain sequence information can be added to the file by using DOMAINSEQS\&. Default value: test\&.scop
.RE
.SH "BUGS"
.PP
@@ -58,7 +67,7 @@
system\&.
.SH "AUTHOR"
.PP
-\fBDebian\-Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
+\fBDebian Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
.RS 4
Wrote the script used to autogenerate this manual page\&.
.RE
Modified: trunk/packages/embassy-domalign/trunk/debian/manpages/seqalign.1e
===================================================================
--- trunk/packages/embassy-domalign/trunk/debian/manpages/seqalign.1e 2010-06-26 08:52:38 UTC (rev 4940)
+++ trunk/packages/embassy-domalign/trunk/debian/manpages/seqalign.1e 2010-06-26 09:55:12 UTC (rev 4941)
@@ -1,14 +1,23 @@
'\" t
.\" Title: SEQALIGN
-.\" Author: Debian-Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-.\" Generator: DocBook XSL Stylesheets v1.75.1 <http://docbook.sf.net/>
-.\" Date: 07/17/2009
+.\" Author: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+.\" Generator: DocBook XSL Stylesheets v1.75.2 <http://docbook.sf.net/>
+.\" Date: 06/26/2010
.\" Manual: EMBOSS Manual for Debian
-.\" Source: EMBOSS 0.1.0+20090715
+.\" Source: EMBOSS 0.1.0+20100115
.\" Language: English
.\"
-.TH "SEQALIGN" "1e" "07/17/2009" "EMBOSS 0.1.0+20090715" "EMBOSS Manual for Debian"
+.TH "SEQALIGN" "1e" "06/26/2010" "EMBOSS 0.1.0+20100115" "EMBOSS Manual for Debian"
.\" -----------------------------------------------------------------
+.\" * Define some portability stuff
+.\" -----------------------------------------------------------------
+.\" ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+.\" http://bugs.debian.org/507673
+.\" http://lists.gnu.org/archive/html/groff/2009-02/msg00013.html
+.\" ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+.ie \n(.g .ds Aq \(aq
+.el .ds Aq '
+.\" -----------------------------------------------------------------
.\" * set default formatting
.\" -----------------------------------------------------------------
.\" disable hyphenation
@@ -39,17 +48,17 @@
.PP
\fB\-dhfinpath\fR \fIdirlist\fR
.RS 4
-This option specifies the location of sequences, e\&.g\&. DHF files (domain hits files) (input)\&. SEQALIGN takes as input a database of either i\&. single sequences, ii\&. sets of unaligned sequences or iii\&. sets of aligned sequences, e\&.g\&. a domain alignment file\&. A \'domain alignment file\' contains a sequence alignment of domains belonging to the same SCOP or CATH family\&. The file is in clustal format annotated with domain family classification information\&. The files generated by using SCOPALIGN will contain a structure\-based sequence alignment of domains of known structure only\&. Such alignments can be extended with sequence relatives (of unknown structure) by using SEQALIGN\&. Default value: \&./
+This option specifies the location of sequences, e\&.g\&. DHF files (domain hits files) (input)\&. SEQALIGN takes as input a database of either i\&. single sequences, ii\&. sets of unaligned sequences or iii\&. sets of aligned sequences, e\&.g\&. a domain alignment file\&. A \*(Aqdomain alignment file\*(Aq contains a sequence alignment of domains belonging to the same SCOP or CATH family\&. The file is in clustal format annotated with domain family classification information\&. The files generated by using SCOPALIGN will contain a structure\-based sequence alignment of domains of known structure only\&. Such alignments can be extended with sequence relatives (of unknown structure) by using SEQALIGN\&. Default value: \&./
.RE
.PP
\fB\-dafinpath\fR \fIdirlist\fR
.RS 4
-This option specifies the location of sequences, e\&.g\&. DAF files (domain alignment files) (input)\&. SEQALIGN takes as input a database of either i\&. single sequences, ii\&. sets of unaligned sequences or iii\&. sets of aligned sequences, e\&.g\&. a domain alignment file\&. A \'domain alignment file\' contains a sequence alignment of domains belonging to the same SCOP or CATH family\&. The file is in clustal format annotated with domain family classification information\&. The files generated by using SCOPALIGN will contain a structure\-based sequence alignment of domains of known structure only\&. Such alignments can be extended with sequence relatives (of unknown structure) by using SEQALIGN\&. Default value: \&./
+This option specifies the location of sequences, e\&.g\&. DAF files (domain alignment files) (input)\&. SEQALIGN takes as input a database of either i\&. single sequences, ii\&. sets of unaligned sequences or iii\&. sets of aligned sequences, e\&.g\&. a domain alignment file\&. A \*(Aqdomain alignment file\*(Aq contains a sequence alignment of domains belonging to the same SCOP or CATH family\&. The file is in clustal format annotated with domain family classification information\&. The files generated by using SCOPALIGN will contain a structure\-based sequence alignment of domains of known structure only\&. Such alignments can be extended with sequence relatives (of unknown structure) by using SEQALIGN\&. Default value: \&./
.RE
.PP
\fB\-dhfindir\fR \fIdirectory\fR
.RS 4
-This option specifies the location of DHF files (domain hits files) (input)\&. A \'domain hits file\' contains database hits (sequences) with domain classification information, in the DHF format (FASTA or EMBL\-like)\&. The hits are relatives to a SCOP or CATH family and are found from a search of a sequence database\&. Files containing hits retrieved by PSIBLAST are generated by using SEQSEARCH\&. Default value: \&./
+This option specifies the location of DHF files (domain hits files) (input)\&. A \*(Aqdomain hits file\*(Aq contains database hits (sequences) with domain classification information, in the DHF format (FASTA or EMBL\-like)\&. The hits are relatives to a SCOP or CATH family and are found from a search of a sequence database\&. Files containing hits retrieved by PSIBLAST are generated by using SEQSEARCH\&. Default value: \&./
.RE
.SS "Required section"
.PP
@@ -67,7 +76,7 @@
.PP
\fB\-dafoutdir\fR \fIoutdir\fR
.RS 4
-This option specifies the location of DAF files (domain alignment files) (output)\&. A \'domain alignment file\' contains a sequence alignment of domains belonging to the same SCOP or CATH family\&. The file is in clustal format annotated with domain family classification information\&. The files generated by using SCOPALIGN will contain a structure\-based sequence alignment of domains of known structure only\&. Such alignments can be extended with sequence relatives (of unknown structure) by using SEQALIGN\&. Default value: \&./
+This option specifies the location of DAF files (domain alignment files) (output)\&. A \*(Aqdomain alignment file\*(Aq contains a sequence alignment of domains belonging to the same SCOP or CATH family\&. The file is in clustal format annotated with domain family classification information\&. The files generated by using SCOPALIGN will contain a structure\-based sequence alignment of domains of known structure only\&. Such alignments can be extended with sequence relatives (of unknown structure) by using SEQALIGN\&. Default value: \&./
.RE
.PP
\fB\-logfile\fR \fIoutfile\fR
@@ -84,7 +93,7 @@
system\&.
.SH "AUTHOR"
.PP
-\fBDebian\-Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
+\fBDebian Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
.RS 4
Wrote the script used to autogenerate this manual page\&.
.RE
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