[med-svn] r4682 - trunk/packages/R/r-other-bio3d/trunk/debian

[Charles Plessy]

Author: plessy
Date: 2010-03-25 05:06:58 +0000 (Thu, 25 Mar 2010)
New Revision: 4682

Modified:
   trunk/packages/R/r-other-bio3d/trunk/debian/README.Debian
   trunk/packages/R/r-other-bio3d/trunk/debian/changelog
   trunk/packages/R/r-other-bio3d/trunk/debian/control
   trunk/packages/R/r-other-bio3d/trunk/debian/copyright
   trunk/packages/R/r-other-bio3d/trunk/debian/rules
Log:
New upstream release, and misc. packaging changes.

  * Incremented Standards-Version (debian/control) to reflect compliance
    with Policy 3.8.4.
  * Depend on a version equal or superior than the R upstream release that
    was used to build this package, using a R:Depends substvar
    (debian/control, debian/rules).
  * Added notes to explain how this package is tested (debian/README.Debian).


Modified: trunk/packages/R/r-other-bio3d/trunk/debian/README.Debian
===================================================================
--- trunk/packages/R/r-other-bio3d/trunk/debian/README.Debian	2010-03-24 21:36:17 UTC (rev 4681)
+++ trunk/packages/R/r-other-bio3d/trunk/debian/README.Debian	2010-03-25 05:06:58 UTC (rev 4682)
@@ -11,8 +11,16 @@
 
 in your publications.
 
-Concerning the packaging I would appreciate help with the
-debian/watch file. The packaging is organised via the Debian-Med
+Concerning the packaging, it is is organised via the Debian-Med
 portal at http://debian-med.alioth.debian.org.
 
 -- Steffen Moeller <moeller at debian.org>  Sat, 26 Jul 2008 19:19:11 +0200
+
+
+Notes on how this package is tested.
+────────────────────────────────────
+
+After building on the maintainer's computer, this package was locally installed
+and the library loaded into R in order to confirm its integrity.
+
+ -- Charles Plessy <plessy at debian.org>  Thu, 25 Mar 2010 13:57:34 +0900

Modified: trunk/packages/R/r-other-bio3d/trunk/debian/changelog
===================================================================
--- trunk/packages/R/r-other-bio3d/trunk/debian/changelog	2010-03-24 21:36:17 UTC (rev 4681)
+++ trunk/packages/R/r-other-bio3d/trunk/debian/changelog	2010-03-25 05:06:58 UTC (rev 4682)
@@ -1,3 +1,15 @@
+r-other-bio3d (1.0-7-1) unstable; urgency=low
+
+  * New upstream release.
+  * Incremented Standards-Version (debian/control) to reflect compliance
+    with Policy 3.8.4.
+  * Depend on a version equal or superior than the R upstream release that
+    was used to build this package, using a R:Depends substvar
+    (debian/control, debian/rules).
+  * Added notes to explain how this package is tested (debian/README.Debian).
+
+ -- Charles Plessy <plessy at debian.org>  Thu, 25 Mar 2010 14:02:42 +0900
+
 r-other-bio3d (1.0-6-1) unstable; urgency=low
 
   * New upstream release.

Modified: trunk/packages/R/r-other-bio3d/trunk/debian/control
===================================================================
--- trunk/packages/R/r-other-bio3d/trunk/debian/control	2010-03-24 21:36:17 UTC (rev 4681)
+++ trunk/packages/R/r-other-bio3d/trunk/debian/control	2010-03-25 05:06:58 UTC (rev 4682)
@@ -4,14 +4,14 @@
 Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
 Uploaders: Steffen Moeller <moeller at debian.org>, Charles Plessy <plessy at debian.org>
 Build-Depends: debhelper (>> 7), cdbs, r-base-dev
-Standards-Version: 3.8.3
+Standards-Version: 3.8.4
 Homepage: http://mccammon.ucsd.edu/~bgrant/bio3d/
 Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/R/r-other-bio3d/trunk/?rev=0&sc=0
 Vcs-Svn: svn://svn.debian.org/svn/debian-med/trunk/packages/R/r-other-bio3d/trunk/
 
 Package: r-other-bio3d
 Architecture: all
-Depends: ${misc:Depends}
+Depends: ${misc:Depends}, ${R:Depends}
 Suggests: r-cran-ncdf, r-cran-rocr, mafft
 Description: GNU R package for biological structure analysis
  The bio3d package contains utilities to process, organize and explore

Modified: trunk/packages/R/r-other-bio3d/trunk/debian/copyright
===================================================================
--- trunk/packages/R/r-other-bio3d/trunk/debian/copyright	2010-03-24 21:36:17 UTC (rev 4681)
+++ trunk/packages/R/r-other-bio3d/trunk/debian/copyright	2010-03-25 05:06:58 UTC (rev 4682)
@@ -1,6 +1,6 @@
 Name      :  Bio3D
 Contact   :  Barry Grant <bgrant at mccammon.ucsd.edu>
-Source    :  http://mccammon.ucsd.edu/~bgrant/bio3d/bio3d_1.0-6.tar.gz
+Source    :  http://mccammon.ucsd.edu/~bgrant/bio3d/bio3d_1.0-7.tar.gz
 
 Copyright :  Barry Grant <bgrant at mccammon.ucsd.edu>
 License   :  GPL-2+

Modified: trunk/packages/R/r-other-bio3d/trunk/debian/rules
===================================================================
--- trunk/packages/R/r-other-bio3d/trunk/debian/rules	2010-03-24 21:36:17 UTC (rev 4681)
+++ trunk/packages/R/r-other-bio3d/trunk/debian/rules	2010-03-25 05:06:58 UTC (rev 4682)
@@ -5,3 +5,7 @@
 
 debRreposname := other
 include /usr/share/R/debian/r-cran.mk
+
+# Require a number equal or superior than the R version the package was built with.
+install/r-$(debRreposname)-$(cranName)::
+	echo "R:Depends=r-base-core (>= $(shell R --version | head -n1 | perl -ne 'print / +([0-9]\.[0-9]+\.[0-9])/'))" >> debian/r-$(debRreposname)-$(cranName).substvars