[med-svn] r5458 - in trunk/packages/R/r-cran-qvalue/trunk/debian: . source

[Andreas Tille]

Author: tille
Date: 2010-11-22 13:08:09 +0000 (Mon, 22 Nov 2010)
New Revision: 5458

Added:
   trunk/packages/R/r-cran-qvalue/trunk/debian/source/
   trunk/packages/R/r-cran-qvalue/trunk/debian/source/format
Modified:
   trunk/packages/R/r-cran-qvalue/trunk/debian/README.Debian
   trunk/packages/R/r-cran-qvalue/trunk/debian/changelog
   trunk/packages/R/r-cran-qvalue/trunk/debian/control
   trunk/packages/R/r-cran-qvalue/trunk/debian/copyright
   trunk/packages/R/r-cran-qvalue/trunk/debian/rules
Log:
New upstream version, fixed lintian warnings, adapted to recent standards in packaging


Modified: trunk/packages/R/r-cran-qvalue/trunk/debian/README.Debian
===================================================================
--- trunk/packages/R/r-cran-qvalue/trunk/debian/README.Debian	2010-11-22 09:36:01 UTC (rev 5457)
+++ trunk/packages/R/r-cran-qvalue/trunk/debian/README.Debian	2010-11-22 13:08:09 UTC (rev 5458)
@@ -1,7 +1,7 @@
-Notes on how this package is tested.
-────────────────────────────────────
+Notes on how this package can be tested.
+────────────────────────────────────────
 
-After building on the maintainer's computer, this package was locally installed
-and the library loaded into R in order to confirm its integrity.
+This package can be tested by loading it into R with the command
+‘library(qvalue)’ in order to confirm its integrity.
 
- -- Charles Plessy <plessy at debian.org> Sun, 29 Nov 2009 13:35:17 +0900
+ -- Andreas Tille <tille at debian.org>  Mon, 22 Nov 2010 13:23:45 +0100

Modified: trunk/packages/R/r-cran-qvalue/trunk/debian/changelog
===================================================================
--- trunk/packages/R/r-cran-qvalue/trunk/debian/changelog	2010-11-22 09:36:01 UTC (rev 5457)
+++ trunk/packages/R/r-cran-qvalue/trunk/debian/changelog	2010-11-22 13:08:09 UTC (rev 5458)
@@ -1,3 +1,18 @@
+r-cran-qvalue (1.24.0-1) unstable; urgency=low
+
+  * New upstream version
+  * Added myself to uploaders
+  * debhelper version >= 7.1)
+  * Standards-Version: 3.9.1 (no changes needed)
+  * debian/source/format: 3.0 (quilt)
+  * debian/rules:
+    - Fixed copy-n-pasto in header comments
+    - Make sure installed docs will not have executable bit set
+  * debian/copyright: Fixed copyright notice
+  * debian/README.Debian: Give better advise for testing the package
+
+ -- Andreas Tille <tille at debian.org>  Mon, 22 Nov 2010 13:23:45 +0100
+
 r-cran-qvalue (1.20.0-1) unstable; urgency=low
 
   * New upstream release.

Modified: trunk/packages/R/r-cran-qvalue/trunk/debian/control
===================================================================
--- trunk/packages/R/r-cran-qvalue/trunk/debian/control	2010-11-22 09:36:01 UTC (rev 5457)
+++ trunk/packages/R/r-cran-qvalue/trunk/debian/control	2010-11-22 13:08:09 UTC (rev 5458)
@@ -2,9 +2,10 @@
 Section: gnu-r
 Priority: optional
 Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-Uploaders: Steffen Moeller <moeller at debian.org>, Charles Plessy <plessy at debian.org>
-Build-Depends: debhelper (>= 7), cdbs, r-base-dev
-Standards-Version: 3.8.3
+Uploaders: Steffen Moeller <moeller at debian.org>, Charles Plessy <plessy at debian.org>,
+ Andreas Tille <tille at debian.org>
+Build-Depends: debhelper (>= 7.1), cdbs, r-base-dev
+Standards-Version: 3.9.1
 Homepage: http://cran.r-project.org/web/packages/qvalue
 Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/R/r-cran-qvalue/trunk/?rev=0&sc=0
 Vcs-Svn: svn://svn.debian.org/svn/debian-med/trunk/packages/R/r-cran-qvalue/trunk/

Modified: trunk/packages/R/r-cran-qvalue/trunk/debian/copyright
===================================================================
--- trunk/packages/R/r-cran-qvalue/trunk/debian/copyright	2010-11-22 09:36:01 UTC (rev 5457)
+++ trunk/packages/R/r-cran-qvalue/trunk/debian/copyright	2010-11-22 13:08:09 UTC (rev 5458)
@@ -4,7 +4,7 @@
 Contact: John D. Storey <jstorey at u.washington.edu>
 Source: http://cran.r-project.org/src/contrib/qvalue_1.20.0.tar.gz
 
-Copyright: Alan Dabney and John D. Storey
+Copyright: © 2006-2010 Alan Dabney and John D. Storey
 License: LGPL-3+
 	
 	This program is free software: you can redistribute it and/or modify

Modified: trunk/packages/R/r-cran-qvalue/trunk/debian/rules
===================================================================
--- trunk/packages/R/r-cran-qvalue/trunk/debian/rules	2010-11-22 09:36:01 UTC (rev 5457)
+++ trunk/packages/R/r-cran-qvalue/trunk/debian/rules	2010-11-22 13:08:09 UTC (rev 5458)
@@ -1,13 +1,16 @@
 #!/usr/bin/make -f
 # 							-*- makefile -*-
-# debian/rules file for the Debian/GNU Linux r-cran-qtl package
-# Copyright 2003-2006 by Dirk Eddelbuettel <edd at debian.org>
+# debian/rules file for the Debian/GNU Linux r-cran-qvalue package
+# Copyright 2008 Steffen Moeller <moeller at debian.org>
+# Copyright 2009 Charles Plessy <plessy at debian.org>
+# License: GPL
 
 include /usr/share/R/debian/r-cran.mk
 
 # Require a number equal or superior than the R version the package was built with.
-install/r-cran-qvalue::
-	echo "R:Depends=r-base-core (>= $(shell R --version | head -n1 | perl -ne 'print / +([0-9]\.[0-9]+\.[0-9])/'))" >> debian/r-$(debRreposname)-$(cranName).substvars
+install/$(package)::
+	echo "R:Depends=r-base-core (>= $(shell R --version | head -n1 | perl -ne 'print / +([0-9]\.[0-9]+\.[0-9])/')~)" >> debian/$(package).substvars
+	chmod 644 debian/$(package)/usr/lib/R/site-library/$(cranName)/doc/*
 
 clean::
 	find . -name "*.pdf" -o -name "*.tex" -o -name "*-eps" -o -name "*.log" -o -name "*.ps" -o -name "*.txt" | xargs -r chmod -x

Added: trunk/packages/R/r-cran-qvalue/trunk/debian/source/format
===================================================================
--- trunk/packages/R/r-cran-qvalue/trunk/debian/source/format	                        (rev 0)
+++ trunk/packages/R/r-cran-qvalue/trunk/debian/source/format	2010-11-22 13:08:09 UTC (rev 5458)
@@ -0,0 +1 @@
+3.0 (quilt)